Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009295 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D043363 6.4e-66 253.8 120 100.0
Hma1.2p1_0101F.1_g049670 Hydrangea macrophylla HOM05D001091 ORTHO05D001020 3.4e-14 82.0 58 69.0
vmacro04051 Vaccinium macrocarpon HOM05D001091 ORTHO05D001020 3.4e-14 82.0 57 68.4
GSVIVG01037531001 Vitis vinifera HOM05D001091 ORTHO05D001020 4.4e-14 81.6 57 70.2
Dinv18857 Davidia involucrata HOM05D001091 ORTHO05D001020 5.7e-14 81.3 57 71.9
TAR636G1693 Trochodendron aralioides HOM05D001091 ORTHO05D001020 2.2e-13 79.3 57 70.2
Rhsim13G0198100 Rhododendron simsii HOM05D001091 ORTHO05D001020 2.8e-13 79.0 57 66.7
Atru.chr3.3075 Acer truncatum HOM05D001091 ORTHO05D001020 3.7e-13 78.6 57 64.9
Atru.chr3.3090 Acer truncatum HOM05D001091 ORTHO05D009271 3.7e-13 78.6 57 64.9
Lsat_1_v5_gn_2_35221 Lactuca sativa HOM05D001091 ORTHO05D001020 4.8e-13 78.2 57 63.2
PGR119G1581 Punica granatum HOM05D001091 ORTHO05D001020 8.3e-13 77.4 89 44.9
Ciclev10027791m.g Citrus clementina HOM05D001091 ORTHO05D001020 4.1e-12 75.1 57 63.2
COL.COLO4_00161 Corchorus olitorius HOM05D001091 ORTHO05D001020 4.1e-12 75.1 92 41.3
Nn6g34617 Nelumbo nucifera HOM05D001091 ORTHO05D001020 5.4e-12 74.7 57 64.9
Sc21g0006730 Simmondsia chinensis HOM05D001091 ORTHO05D001020 5.4e-12 74.7 57 61.4
AUR62020212 Chenopodium quinoa HOM05D001091 ORTHO05D001020 7.0e-12 74.3 57 59.6
Lj2C949G1 Lonicera japonica HOM05D001091 ORTHO05D001020 7.0e-12 74.3 57 64.9
Duzib150G0688 Durio zibethinus HOM05D001091 ORTHO05D001020 1.6e-11 73.2 92 42.4
Manes.11G103600 Manihot esculenta HOM05D001091 ORTHO05D001020 1.6e-11 73.2 57 57.9
Thecc.09G267800 Theobroma cacao HOM05D001091 ORTHO05D001020 1.6e-11 73.2 57 61.4
AUR62001573 Chenopodium quinoa HOM05D001091 ORTHO05D001020 2.0e-11 72.8 57 57.9
AUR62039138 Chenopodium quinoa HOM05D000880 ORTHO05D043363 2.7e-11 72.4 52 61.5
HanXRQChr17g0561191 Helianthus annuus HOM05D001091 ORTHO05D001020 2.7e-11 72.4 57 61.4
Oeu048823.1 Olea europaea HOM05D001091 ORTHO05D001020 2.7e-11 72.4 57 57.9
FAN25G1894 Fragaria x ananassa HOM05D001091 ORTHO05D001020 3.5e-11 72.0 55 60.0
Hund18804 Selenicereus undatus HOM05D001091 ORTHO05D001020 4.5e-11 71.6 57 57.9
Eucgr.J00586 Eucalyptus grandis HOM05D001091 ORTHO05D001020 5.9e-11 71.2 57 61.4
RcHm_v2.0_Chr5g0049121 Rosa chinensis HOM05D001091 ORTHO05D001020 5.9e-11 71.2 53 62.3
FvH4_3g26140 Fragaria vesca HOM05D001091 ORTHO05D001020 7.7e-11 70.9 53 60.4
FAN16G2369 Fragaria x ananassa HOM05D001091 ORTHO05D001020 7.7e-11 70.9 53 60.4
FAN21G3893 Fragaria x ananassa HOM05D001091 ORTHO05D001020 7.7e-11 70.9 53 60.4
Duzib168G0067 Durio zibethinus HOM05D001091 ORTHO05D001020 1.0e-10 70.5 57 57.9
Nitab4.5_0000875g0120 Nicotiana tabacum HOM05D001091 ORTHO05D001020 1.3e-10 70.1 57 57.9
Potri.001G214800 Populus trichocarpa HOM05D001091 ORTHO05D001020 1.3e-10 70.1 59 54.2
QL01p019200 Quercus lobata HOM05D001091 ORTHO05D001020 1.3e-10 70.1 59 52.5
THA.LOC104799571 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.3e-10 70.1 57 61.4
TAR633G1177 Trochodendron aralioides HOM05D001091 ORTHO05D001020 1.3e-10 70.1 57 59.6
Gohir.A09G101100 Gossypium hirsutum HOM05D001091 ORTHO05D001020 1.7e-10 69.7 57 56.1
Gorai.006G117900 Gossypium raimondii HOM05D001091 ORTHO05D001020 1.7e-10 69.7 57 56.1
MD11G1174900 Malus domestica HOM05D001091 ORTHO05D001020 1.7e-10 69.7 50 66.0
Aqoxy1G00611 Aquilegia oxysepala HOM05D001091 ORTHO05D001020 2.3e-10 69.3 57 56.1
Cfa010206 Carpinus fangiana HOM05D001091 ORTHO05D001020 2.3e-10 69.3 57 56.1
TWI31G0595 Tripterygium wilfordii HOM05D001091 ORTHO05D001020 2.3e-10 69.3 54 64.8
Nitab4.5_0003657g0030 Nicotiana tabacum HOM05D001091 ORTHO05D001020 2.9e-10 68.9 57 56.1
Haze_23594 Corylus avellana HOM05D001091 ORTHO05D001020 3.8e-10 68.6 54 59.3
Lalb_Chr19g0136151 Lupinus albus HOM05D001091 ORTHO05D001020 3.8e-10 68.6 53 60.4
Ca_01624_v3 Cicer arietinum L. HOM05D001091 ORTHO05D001020 5.0e-10 68.2 57 56.1
TPR.G4164 Trifolium pratense HOM05D001091 ORTHO05D001020 5.0e-10 68.2 57 56.1
Psat5g262560 Pisum sativum HOM05D001091 ORTHO05D001020 8.6e-10 67.4 57 54.4
Sabra16G0128400 Salix brachista HOM05D001091 ORTHO05D001020 8.6e-10 67.4 56 55.4
ECA238G3615 Erigeron canadensis HOM05D001091 ORTHO05D001020 1.5e-09 66.6 57 59.6
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.9e-09 66.2 57 59.6
EL10Ac7g16275 Beta vulgaris HOM05D001091 ORTHO05D001020 2.5e-09 65.9 57 54.4
Peaxi162Scf00098g00113 Petunia axillaris HOM05D001091 ORTHO05D001020 2.5e-09 65.9 57 52.6
arahy.Tifrunner.gnm1.ann1.KRDC8H Arachis hypogaea HOM05D001091 ORTHO05D001020 3.3e-09 65.5 53 56.6
arahy.Tifrunner.gnm1.ann1.RIT83U Arachis hypogaea HOM05D001091 ORTHO05D001020 3.3e-09 65.5 57 54.4
arahy.Tifrunner.gnm1.ann1.X1RCBJ Arachis hypogaea HOM05D001091 ORTHO05D001020 3.3e-09 65.5 57 54.4
arahy.Tifrunner.gnm1.ann1.ZKTD7I Arachis hypogaea HOM05D001091 ORTHO05D001020 3.3e-09 65.5 53 56.6
BcaNung07296 Brassica carinata HOM05D001091 ORTHO05D001020 3.3e-09 65.5 57 57.9
CAN.G1463.15 Capsicum annuum HOM05D001091 ORTHO05D001020 3.3e-09 65.5 57 52.6
Atru.chr8.1306 Acer truncatum HOM05D001091 ORTHO05D001020 4.2e-09 65.1 55 54.5
Cc01_g07850 Coffea canephora HOM05D001091 ORTHO05D001020 4.2e-09 65.1 57 52.6
AL6G32990 Arabidopsis lyrata HOM05D001091 ORTHO05D001020 5.5e-09 64.7 57 57.9
SalBow6G2883 Salvia bowleyana HOM05D001091 ORTHO05D001020 5.5e-09 64.7 57 52.6
BcaB01g04748 Brassica carinata HOM05D001091 ORTHO05D001020 7.2e-09 64.3 57 57.9
A10p18710 Brassica napus HOM05D001091 ORTHO05D001020 7.2e-09 64.3 57 56.1
C09p54650 Brassica napus HOM05D001091 ORTHO05D001020 7.2e-09 64.3 57 56.1
BraA10t43951Z Brassica rapa HOM05D001091 ORTHO05D001020 7.2e-09 64.3 57 56.1
Gohir.D09G100500 Gossypium hirsutum HOM05D001091 ORTHO05D001020 7.2e-09 64.3 57 52.6
PSO339G5290 Papaver somniferum HOM05D001091 ORTHO05D001020 7.2e-09 64.3 54 59.3
PSO384G3742 Papaver somniferum HOM05D001091 ORTHO05D001020 7.2e-09 64.3 54 59.3
Prupe.6G147300 Prunus persica HOM05D001091 ORTHO05D001020 7.2e-09 64.3 53 66.0
AT5G22030 Arabidopsis thaliana HOM05D001091 ORTHO05D001020 9.5e-09 63.9 55 58.2
BcaC01g06610 Brassica carinata HOM05D001091 ORTHO05D001020 9.5e-09 63.9 57 57.9
A03p10540 Brassica napus HOM05D001091 ORTHO05D001020 9.5e-09 63.9 57 57.9
BolC9t58330H Brassica oleracea HOM05D001091 ORTHO05D001020 9.5e-09 63.9 57 56.1
Thhalv10012650m.g Eutrema salsugineum HOM05D001091 ORTHO05D001020 9.5e-09 63.9 57 56.1
Phvul.005G117700 Phaseolus vulgaris HOM05D001091 ORTHO05D001020 9.5e-09 63.9 57 56.1
MSTRG.21007 Avicennia marina HOM05D001091 ORTHO05D001020 1.2e-08 63.5 57 52.6
Lj3g0006295 Lotus japonicus HOM05D001091 ORTHO05D001020 1.2e-08 63.5 57 52.6
BcaB08g36457 Brassica carinata HOM05D001091 ORTHO05D001020 1.6e-08 63.2 57 56.1
BolC3t13686H Brassica oleracea HOM05D001091 ORTHO05D001020 1.6e-08 63.2 55 58.2
BraA03t10366Z Brassica rapa HOM05D001091 ORTHO05D001020 1.6e-08 63.2 55 58.2
Carub.0006s1967 Capsella rubella HOM05D001091 ORTHO05D001020 1.6e-08 63.2 57 56.1
C03p12130 Brassica napus HOM05D001091 ORTHO05D001020 2.1e-08 62.8 57 56.1
Lalb_Chr01g0005811 Lupinus albus HOM05D001091 ORTHO05D001020 2.1e-08 62.8 53 54.7
Sp6g23160 Schrenkiella parvula HOM05D001091 ORTHO05D001020 2.1e-08 62.8 57 56.1
Ah.08g222100 Amaranthus hybridus HOM05D001091 ORTHO05D001020 2.8e-08 62.4 57 50.9
CDE10G0151 Ceratophyllum demersum HOM05D001091 ORTHO05D001020 2.8e-08 62.4 57 56.1
MELO3C014526.2 Cucumis melo HOM05D001091 ORTHO05D001020 2.8e-08 62.4 57 56.1
DCAR_006189 Daucus carota HOM05D001091 ORTHO05D001020 2.8e-08 62.4 56 50.0
Oeu058192.1 Olea europaea HOM05D001091 ORTHO05D001020 2.8e-08 62.4 55 58.2
ClCG02G022500 Citrullus lanatus HOM05D001091 ORTHO05D001020 3.6e-08 62.0 57 56.1
CsaV3_6G038640 Cucumis sativus L. HOM05D001091 ORTHO05D001020 3.6e-08 62.0 57 56.1
Glyma.12G190400 Glycine max HOM05D001091 ORTHO05D001020 3.6e-08 62.0 57 56.1
MD03G1159600 Malus domestica HOM05D001091 ORTHO05D001020 4.7e-08 61.6 53 54.7
Migut.D02381 Erythranthe guttata HOM05D001091 ORTHO05D001020 6.1e-08 61.2 54 51.9
CARHR191500 Cardamine hirsuta HOM05D001091 ORTHO05D001020 8.0e-08 60.8 57 54.4
Sed0022355 Sechium edule HOM05D001091 ORTHO05D001020 8.0e-08 60.8 46 65.2
MBI05_g36783_MAGBIO Magnolia biondii HOM05D001091 ORTHO05D001020 1.4e-07 60.1 57 47.4
MSTRG.18797 Avicennia marina HOM05D001091 ORTHO05D001020 1.8e-07 59.7 57 49.1
VMungo1080G0672 Vigna mungo HOM05D001091 ORTHO05D001020 1.8e-07 59.7 55 52.7
CiPaw.13G126800 Carya illinoinensis HOM05D001091 ORTHO05D001020 3.0e-07 58.9 57 49.1
Solyc06g073930.4 Solanum lycopersicum HOM05D001091 ORTHO05D001020 3.0e-07 58.9 57 49.1
Sopen06g030330 Solanum pennellii HOM05D001091 ORTHO05D001020 3.0e-07 58.9 57 49.1
Lj1C1058G17 Lonicera japonica HOM05D001091 ORTHO05D001020 4.0e-07 58.5 39 69.2
RcHm_v2.0_Chr3g0476581 Rosa chinensis HOM05D001091 ORTHO05D001020 4.0e-07 58.5 55 54.5
SHI25267 Sapria himalayana HOM05D001091 ORTHO05D001020 5.2e-07 58.2 73 43.8
GSVIVG01022582001 Vitis vinifera HOM05D001091 ORTHO05D001020 5.2e-07 58.2 44 61.4
Aa31LG1G13370 Aethionema arabicum HOM05D001091 ORTHO05D001020 6.8e-07 57.8 51 56.9
Glyma.13G311300 Glycine max HOM05D001091 ORTHO05D001020 8.9e-07 57.4 57 52.6
unitig_899.g15383 Utricularia gibba HOM05D001091 ORTHO05D015841 1.2e-06 57.0 47 57.4
Medtr2g087710 Medicago truncatula HOM05D001091 ORTHO05D001020 1.5e-06 56.6 57 49.1
Ciclev10012460m.g Citrus clementina HOM05D001091 ORTHO05D001020 2.6e-06 55.8 52 48.1
CSS0002029 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D001020 5.7e-06 54.7 52 51.9
CSS0017286 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D001020 5.7e-06 54.7 52 51.9
Gohir.D09G129200 Gossypium hirsutum HOM05D001091 ORTHO05D001020 7.5e-06 54.3 33 69.7
Gorai.006G147900 Gossypium raimondii HOM05D001091 ORTHO05D001020 7.5e-06 54.3 33 69.7


User provided reference genes

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