Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009268 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 1.1e-43 179.5 89 100.0
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 2.0e-32 142.1 89 83.1
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 4.4e-27 124.4 89 75.3
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 5.7e-27 124.0 89 69.7
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 7.5e-27 123.6 89 74.2
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 2.2e-26 122.1 89 71.9
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 4.8e-26 120.9 89 71.9
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 4.8e-26 120.9 89 71.9
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 8.3e-26 120.2 89 68.5
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 4.1e-25 117.9 89 70.8
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 7.0e-25 117.1 89 69.7
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 2.7e-24 115.2 89 69.7
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 2.7e-24 115.2 89 68.5
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 2.7e-24 115.2 89 70.8
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 4.5e-24 114.4 89 66.3
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 5.9e-24 114.0 87 65.5
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.0e-23 113.2 89 70.8
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 1.3e-23 112.8 89 68.5
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 1.7e-23 112.5 89 67.4
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 2.2e-23 112.1 87 67.8
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 2.9e-23 111.7 89 61.8
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.9e-23 111.7 89 69.7
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 2.9e-23 111.7 90 65.6
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 3.8e-23 111.3 89 67.4
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 5.0e-23 110.9 90 65.6
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 5.0e-23 110.9 87 62.1
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 6.5e-23 110.5 87 62.1
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 6.5e-23 110.5 87 65.5
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 8.5e-23 110.2 84 66.7
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 8.5e-23 110.2 89 64.0
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 1.5e-22 109.4 89 66.3
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 3.2e-22 108.2 89 61.8
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 4.2e-22 107.8 87 60.9
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 4.2e-22 107.8 87 64.4
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 7.2e-22 107.1 88 64.8
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 9.4e-22 106.7 89 64.0
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 1.6e-21 105.9 87 60.9
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 2.7e-21 105.1 90 64.4
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 3.6e-21 104.8 85 61.2
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 3.6e-21 104.8 89 64.0
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 3.6e-21 104.8 84 65.5
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 4.7e-21 104.4 89 64.0
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 4.7e-21 104.4 87 66.7
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 4.7e-21 104.4 81 65.4
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 6.1e-21 104.0 89 61.8
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 8.0e-21 103.6 81 66.7
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 1.0e-20 103.2 102 56.9
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 1.0e-20 103.2 81 65.4
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.4e-20 102.8 89 60.7
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 1.8e-20 102.4 87 58.6
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.3e-20 102.1 87 58.6
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 3.0e-20 101.7 86 60.5
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 4.0e-20 101.3 89 61.8
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 4.0e-20 101.3 87 62.1
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 4.0e-20 101.3 87 62.1
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 4.0e-20 101.3 87 62.1
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 4.0e-20 101.3 89 59.6
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 6.8e-20 100.5 81 63.0
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 6.8e-20 100.5 87 57.5
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 6.8e-20 100.5 81 65.4
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 6.8e-20 100.5 89 60.7
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 6.8e-20 100.5 81 64.2
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 6.8e-20 100.5 87 62.1
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 8.8e-20 100.1 86 59.3
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.2e-19 99.8 86 60.5
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.2e-19 99.8 86 60.5
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 1.5e-19 99.4 87 56.3
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.5e-19 99.4 89 59.6
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 2.0e-19 99.0 89 58.4
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 2.0e-19 99.0 86 59.3
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 2.6e-19 98.6 87 64.4
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 2.6e-19 98.6 86 61.6
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 2.6e-19 98.6 87 60.9
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 2.6e-19 98.6 87 64.4
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 2.6e-19 98.6 87 58.6
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 4.4e-19 97.8 87 55.2
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 4.4e-19 97.8 89 58.4
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 4.4e-19 97.8 87 60.9
FAN03G2881 Fragaria x ananassa HOM05D003400 ORTHO05D003687 5.7e-19 97.4 86 59.3
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 9.8e-19 96.7 81 64.2
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 9.8e-19 96.7 89 56.2
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 1.3e-18 96.3 87 59.8
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 1.3e-18 96.3 82 65.9
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 1.7e-18 95.9 87 63.2
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 4.8e-18 94.4 87 57.5
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 6.3e-18 94.0 89 58.4
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 8.3e-18 93.6 89 55.1
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 4.1e-17 91.3 85 56.5
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 9.1e-17 90.1 87 55.2
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 9.1e-17 90.1 81 60.5
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 9.1e-17 90.1 89 57.3
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 1.2e-16 89.7 87 54.0
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 1.2e-16 89.7 87 54.0
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 1.6e-16 89.4 87 55.2
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 1.6e-16 89.4 87 55.2
Dinv34485 Davidia involucrata HOM05D003400 ORTHO05D003687 1.6e-16 89.4 69 68.1
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.6e-16 89.4 87 56.3
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 1.6e-16 89.4 87 52.9
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.0e-16 89.0 85 55.3
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.0e-16 89.0 85 55.3
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 2.7e-16 88.6 87 56.3
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 3.5e-16 88.2 89 56.2
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 3.5e-16 88.2 81 56.8
BcaC05g26700 Brassica carinata HOM05D005416 ORTHO05D007956 7.7e-16 87.0 87 54.0
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 1.0e-15 86.7 87 54.0
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 1.7e-15 85.9 87 52.9
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 1.7e-15 85.9 85 54.1
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 3.8e-15 84.7 87 50.6
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 3.8e-15 84.7 85 54.1
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 3.8e-15 84.7 87 52.9
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 3.8e-15 84.7 87 58.6
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 1.1e-14 83.2 85 52.9
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 1.1e-14 83.2 85 52.9
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 1.1e-14 83.2 85 52.9
Actinidia33867 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.9e-14 82.4 84 54.8
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 2.5e-14 82.0 86 54.7
Oeu006055.1 Olea europaea HOM05D003400 ORTHO05D003687 2.8e-13 78.6 84 59.5
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 4.7e-13 77.8 87 52.9
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 4.7e-13 77.8 89 51.7
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 6.1e-13 77.4 87 48.3
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 6.1e-13 77.4 89 50.6
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 1.0e-12 76.6 87 51.7
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 2.3e-12 75.5 87 50.6
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 2.3e-12 75.5 77 57.1
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 4.0e-12 74.7 90 51.1
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 6.8e-12 73.9 87 47.1
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 8.9e-12 73.6 89 48.3
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 8.9e-12 73.6 89 49.4
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 4.4e-11 71.2 88 50.0
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 4.4e-11 71.2 89 47.2
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 7.5e-11 70.5 90 50.0
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 1.7e-10 69.3 80 53.8
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 1.7e-10 69.3 52 65.4
HanXRQChr09g0240401 Helianthus annuus HOM05D003400 ORTHO05D003687 2.2e-10 68.9 89 48.3
HanXRQChr09g0253941 Helianthus annuus HOM05D003400 ORTHO05D003687 2.2e-10 68.9 89 48.3
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 2.2e-10 68.9 96 50.0
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 2.8e-10 68.6 87 48.3
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 3.7e-10 68.2 89 44.9
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 1.1e-09 66.6 86 48.8
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 1.1e-09 66.6 89 43.8
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 1.4e-09 66.2 86 50.0
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 1.4e-09 66.2 63 55.6
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 4.1e-09 64.7 93 46.2
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 7.0e-09 63.9 52 59.6
Duzib128G1678 Durio zibethinus HOM05D003400 ORTHO05D003687 7.0e-09 63.9 64 50.0
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 1.2e-08 63.2 52 59.6
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 2.0e-08 62.4 87 46.0
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 2.7e-08 62.0 85 47.1
unitig_46.g18749 Utricularia gibba HOM05D003400 ORTHO05D003687 3.5e-08 61.6 81 44.4
Zm00001eb234650 Zea mays HOM05D003400 ORTHO05D003687 5.9e-08 60.8 77 46.8
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 7.8e-08 60.5 87 42.5
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 7.8e-08 60.5 85 45.9
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 7.8e-08 60.5 87 42.5
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 1.0e-07 60.1 87 42.5
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 1.0e-07 60.1 85 45.9
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 1.0e-07 60.1 86 43.0
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 1.7e-07 59.3 85 45.9
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 1.7e-07 59.3 84 41.7
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 2.3e-07 58.9 84 45.2
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 5.0e-07 57.8 82 46.3
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 2.5e-06 55.5 84 38.1
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 3.3e-06 55.1 87 43.7


User provided reference genes

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