Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009264 Camellia sinensis var. sinensis HOM05D005628 ORTHO05D007348 2.5e-29 131.3 63 100.0
CSS0034642 Camellia sinensis var. sinensis HOM05D005628 ORTHO05D007348 1.2e-18 95.9 45 97.8
Rhsim07G0251100 Rhododendron simsii HOM05D005628 ORTHO05D007348 1.4e-16 89.0 45 84.4
FvH4_2g37930 Fragaria vesca HOM05D005628 ORTHO05D007348 3.2e-16 87.8 45 84.4
CiPaw.07G143500 Carya illinoinensis HOM05D005628 ORTHO05D007348 4.2e-16 87.4 45 80.0
MD08G1007500 Malus domestica HOM05D005628 ORTHO05D007348 4.2e-16 87.4 45 82.2
Actinidia29770 Actinidia chinensis HOM05D005628 ORTHO05D007348 5.5e-16 87.0 45 82.2
Haze_22711 Corylus avellana HOM05D005628 ORTHO05D007348 5.5e-16 87.0 45 82.2
Nitab4.5_0003030g0070 Nicotiana tabacum HOM05D005628 ORTHO05D007348 5.5e-16 87.0 45 82.2
vmacro04380 Vaccinium macrocarpon HOM05D005628 ORTHO05D007348 5.5e-16 87.0 45 82.2
FAN15G2092 Fragaria x ananassa HOM05D005628 ORTHO05D007348 7.2e-16 86.7 45 82.2
FAN20G0939 Fragaria x ananassa HOM05D005628 ORTHO05D007348 7.2e-16 86.7 45 82.2
FAN27G2668 Fragaria x ananassa HOM05D005628 ORTHO05D007348 7.2e-16 86.7 45 82.2
MBI05_g13277_MAGBIO Magnolia biondii HOM05D005628 ORTHO05D007348 7.2e-16 86.7 45 82.2
Lj4C17T5 Lonicera japonica HOM05D005628 ORTHO05D007348 9.3e-16 86.3 45 82.2
MD15G1006700 Malus domestica HOM05D005628 ORTHO05D007348 9.3e-16 86.3 45 80.0
Prupe.1G359300 Prunus persica HOM05D005628 ORTHO05D007348 9.3e-16 86.3 45 80.0
Solyc04g081970.3 Solanum lycopersicum HOM05D005628 ORTHO05D007348 9.3e-16 86.3 45 82.2
Sopen04g035620 Solanum pennellii HOM05D005628 ORTHO05D007348 9.3e-16 86.3 45 82.2
PGSC0003DMG400009956 Solanum tuberosum HOM05D005628 ORTHO05D007348 9.3e-16 86.3 45 82.2
Aqoxy5G01095 Aquilegia oxysepala HOM05D005628 ORTHO05D007348 1.2e-15 85.9 45 82.2
Migut.C00901 Erythranthe guttata HOM05D005628 ORTHO05D007348 1.2e-15 85.9 45 82.2
QL02p012950 Quercus lobata HOM05D005628 ORTHO05D007348 1.2e-15 85.9 45 80.0
Sabra05G0189800 Salix brachista HOM05D005628 ORTHO05D007348 1.2e-15 85.9 45 80.0
Cfa014012 Carpinus fangiana HOM05D005628 ORTHO05D007348 1.6e-15 85.5 45 80.0
Manes.05G142400 Manihot esculenta HOM05D005628 ORTHO05D007348 1.6e-15 85.5 45 82.2
RcHm_v2.0_Chr6g0303681 Rosa chinensis HOM05D005628 ORTHO05D007348 1.6e-15 85.5 45 80.0
MSTRG.25277 Avicennia marina HOM05D005628 ORTHO05D007348 2.1e-15 85.1 45 80.0
Nn5g30848 Nelumbo nucifera HOM05D005628 ORTHO05D007348 2.1e-15 85.1 45 80.0
Sc15g0004660 Simmondsia chinensis HOM05D005628 ORTHO05D007348 2.1e-15 85.1 45 82.2
Cc10_g01120 Coffea canephora HOM05D005628 ORTHO05D007348 2.7e-15 84.7 45 77.8
Potri.005G245700 Populus trichocarpa HOM05D005628 ORTHO05D007348 2.7e-15 84.7 45 77.8
TAR376G1006 Trochodendron aralioides HOM05D005628 ORTHO05D007348 2.7e-15 84.7 45 80.0
Peaxi162Scf00174g00813 Petunia axillaris HOM05D005628 ORTHO05D007348 3.6e-15 84.3 45 80.0
CANSAT64G0481 Cannabis sativa HOM05D005628 ORTHO05D007348 4.6e-15 84.0 45 77.8
PSO170G4881 Papaver somniferum HOM05D005628 ORTHO05D007348 4.6e-15 84.0 45 77.8
Ah.00g000640 Amaranthus hybridus HOM05D005628 ORTHO05D007348 6.1e-15 83.6 43 81.4
Carub.0002s2297 Capsella rubella HOM05D005628 ORTHO05D007348 6.1e-15 83.6 45 80.0
Oeu007384.1 Olea europaea HOM05D005628 ORTHO05D007348 6.1e-15 83.6 45 77.8
PGR031G3420 Punica granatum HOM05D005628 ORTHO05D007348 6.1e-15 83.6 45 75.6
AL2G36120 Arabidopsis lyrata HOM05D005628 ORTHO05D007348 7.9e-15 83.2 45 77.8
Thhalv10018920m.g Eutrema salsugineum HOM05D005628 ORTHO05D007348 7.9e-15 83.2 45 77.8
PSO170G2194 Papaver somniferum HOM05D005628 ORTHO05D007348 7.9e-15 83.2 49 69.4
Sp5g31200 Schrenkiella parvula HOM05D005628 ORTHO05D007348 7.9e-15 83.2 45 77.8
TWI36G0492 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 7.9e-15 83.2 43 83.7
TWI56G0240 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 7.9e-15 83.2 43 83.7
Cpa.g.sc26.263 Carica papaya HOM05D005628 ORTHO05D007348 1.0e-14 82.8 43 81.4
COL.COLO4_26082 Corchorus olitorius HOM05D005628 ORTHO05D007348 1.0e-14 82.8 43 81.4
Duzib116G0718 Durio zibethinus HOM05D005628 ORTHO05D007348 1.0e-14 82.8 43 81.4
SGA_v2.0_scaffold145G36102 Striga asiatica HOM05D005628 ORTHO05D007348 1.0e-14 82.8 45 75.6
Thecc.08G051900 Theobroma cacao HOM05D005628 ORTHO05D007348 1.0e-14 82.8 43 81.4
BcaC08g47300 Brassica carinata HOM05D005628 ORTHO05D007348 1.3e-14 82.4 45 77.8
BcaC08g47301 Brassica carinata HOM05D005628 ORTHO05D007348 1.3e-14 82.4 45 77.8
A07p41640 Brassica napus HOM05D005628 ORTHO05D007348 1.3e-14 82.4 45 77.8
BolC6t40041H Brassica oleracea HOM05D005628 ORTHO05D007348 1.3e-14 82.4 45 77.8
BraA07t31693Z Brassica rapa HOM05D005628 ORTHO05D007348 1.3e-14 82.4 45 77.8
Dinv31894 Davidia involucrata HOM05D005628 ORTHO05D007348 1.3e-14 82.4 45 75.6
Gohir.A05G182700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 1.3e-14 82.4 43 79.1
Gohir.D05G185700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 1.3e-14 82.4 43 79.1
Gorai.009G191100 Gossypium raimondii HOM05D005628 ORTHO05D007348 1.3e-14 82.4 43 79.1
HanXRQChr05g0146641 Helianthus annuus HOM05D005628 ORTHO05D007348 1.3e-14 82.4 43 79.1
BcaC03g15644 Brassica carinata HOM05D005628 ORTHO05D007348 1.8e-14 82.0 45 75.6
BcaC08g47294 Brassica carinata HOM05D005628 ORTHO05D007348 1.8e-14 82.0 45 75.6
C02p33470 Brassica napus HOM05D005628 ORTHO05D007348 1.8e-14 82.0 45 75.6
C06p50020 Brassica napus HOM05D005628 ORTHO05D007348 1.8e-14 82.0 45 75.6
Aa31LG4G6200 Aethionema arabicum HOM05D005628 ORTHO05D007348 2.3e-14 81.6 45 82.2
Lsat_1_v5_gn_0_661 Lactuca sativa HOM05D005628 ORTHO05D007348 2.3e-14 81.6 43 79.1
PSO017G6535 Papaver somniferum HOM05D005628 ORTHO05D007348 2.3e-14 81.6 49 71.4
Atru.chr13.215 Acer truncatum HOM05D005628 ORTHO05D007348 3.0e-14 81.3 43 79.1
BolC2t09357H Brassica oleracea HOM05D005628 ORTHO05D007348 3.0e-14 81.3 45 75.6
Psat6g000840 Pisum sativum HOM05D005628 ORTHO05D007348 3.0e-14 81.3 45 77.8
CARHR069620 Cardamine hirsuta HOM05D005628 ORTHO05D007348 3.9e-14 80.9 45 80.0
Ca_13486_v3 Cicer arietinum L. HOM05D005628 ORTHO05D007348 3.9e-14 80.9 45 77.8
PSO210G2114 Papaver somniferum HOM05D005628 ORTHO05D007348 3.9e-14 80.9 43 76.7
Hund01723 Selenicereus undatus HOM05D005628 ORTHO05D007348 3.9e-14 80.9 43 76.7
Eucgr.F03707 Eucalyptus grandis HOM05D005628 ORTHO05D007348 5.1e-14 80.5 45 80.0
Hma1.2p1_1598F.1_g292970 Hydrangea macrophylla HOM05D005628 ORTHO05D007348 5.1e-14 80.5 45 75.6
unitig_749.g13905 Utricularia gibba HOM05D005628 ORTHO05D007348 5.1e-14 80.5 48 72.9
CAN.G311.75 Capsicum annuum HOM05D005628 ORTHO05D007348 6.7e-14 80.1 45 75.6
Lalb_Chr03g0033571 Lupinus albus HOM05D005628 ORTHO05D007348 6.7e-14 80.1 45 75.6
AT1G76080 Arabidopsis thaliana HOM05D005628 ORTHO05D007348 8.7e-14 79.7 45 77.8
CiPaw.08G069300 Carya illinoinensis HOM05D005628 ORTHO05D007348 8.7e-14 79.7 44 75.0
ClCG08G014020 Citrullus lanatus HOM05D005628 ORTHO05D007348 8.7e-14 79.7 43 81.4
ECA232G2943 Erigeron canadensis HOM05D005628 ORTHO05D007348 1.1e-13 79.3 43 76.7
Medtr1g026125 Medicago truncatula HOM05D005628 ORTHO05D007348 1.1e-13 79.3 45 71.1
TPR.G26414 Trifolium pratense HOM05D005628 ORTHO05D007348 1.1e-13 79.3 44 79.5
A02p20420 Brassica napus HOM05D005628 ORTHO05D007348 1.5e-13 79.0 45 71.1
Lj5g0010043 Lotus japonicus HOM05D005628 ORTHO05D007348 1.5e-13 79.0 45 73.3
SEGI_09368 Sequoiadendron giganteum HOM05D005628 ORTHO05D007348 1.5e-13 79.0 45 73.3
Phvul.001G002100 Phaseolus vulgaris HOM05D005628 ORTHO05D007348 1.9e-13 78.6 43 81.4
Os07g0476900 Oryza sativa ssp. japonica HOM05D005628 ORTHO05D007348 2.5e-13 78.2 45 71.1
CDE02G2619 Ceratophyllum demersum HOM05D005628 ORTHO05D007348 3.3e-13 77.8 45 73.3
arahy.Tifrunner.gnm1.ann1.KUZ5B2 Arachis hypogaea HOM05D005628 ORTHO05D007348 5.7e-13 77.0 45 73.3
Glyma.14G222500 Glycine max HOM05D005628 ORTHO05D007348 5.7e-13 77.0 43 79.1
THA.LOC104811445 Tarenaya hassleriana HOM05D005628 ORTHO05D007348 5.7e-13 77.0 45 73.3
Lj9P400T45 Lonicera japonica HOM05D005628 ORTHO05D007348 7.4e-13 76.6 45 66.7
Sed0003076 Sechium edule HOM05D005628 ORTHO05D007348 9.7e-13 76.3 43 74.4
arahy.Tifrunner.gnm1.ann1.W1N14J Arachis hypogaea HOM05D005628 ORTHO05D007348 1.3e-12 75.9 45 71.1
EL10Ac1g02081 Beta vulgaris HOM05D005628 ORTHO05D007348 1.3e-12 75.9 43 72.1
AUR62013879 Chenopodium quinoa HOM05D005628 ORTHO05D007348 1.3e-12 75.9 43 72.1
AUR62036715 Chenopodium quinoa HOM05D005628 ORTHO05D007348 1.3e-12 75.9 43 72.1
MELO3C011340.2 Cucumis melo HOM05D005628 ORTHO05D007348 1.3e-12 75.9 43 76.7
Ciclev10001692m.g Citrus clementina HOM05D005628 ORTHO05D007348 1.6e-12 75.5 45 71.1
CsaV3_2G024440 Cucumis sativus L. HOM05D005628 ORTHO05D007348 1.6e-12 75.5 43 74.4
PSO648G0024 Papaver somniferum HOM05D005628 ORTHO05D007348 1.6e-12 75.5 45 62.2
PSO648G0070 Papaver somniferum HOM05D005628 ORTHO05D007348 1.6e-12 75.5 45 62.2
PSO648G0080 Papaver somniferum HOM05D005628 ORTHO05D007348 1.6e-12 75.5 45 62.2
PSO795G0001 Papaver somniferum HOM05D005628 ORTHO05D007348 1.6e-12 75.5 45 62.2
VMungo0647G1170 Vigna mungo HOM05D005628 ORTHO05D007348 1.6e-12 75.5 43 74.4
DCAR_009514 Daucus carota HOM05D005628 ORTHO05D007348 3.7e-12 74.3 45 73.3
ATR0661G503 Amborella trichopoda HOM05D005628 ORTHO05D007348 6.3e-12 73.6 45 68.9
PSO339G4729 Papaver somniferum HOM05D005628 ORTHO05D007348 1.8e-11 72.0 45 62.2
HPP92_014531 Vanilla planifolia HOM05D005628 ORTHO05D007348 1.8e-11 72.0 45 66.7
SMO356G0420 Selaginella moellendorffii HOM05D005628 ORTHO05D007348 3.1e-11 71.2 43 69.8
Zm00001eb319950 Zea mays HOM05D005628 ORTHO05D007348 3.1e-11 71.2 45 62.2
Mapoly0024s0029 Marchantia polymorpha HOM05D005628 ORTHO05D007348 2.2e-09 65.1 45 55.6
CBR_g26413 Chara braunii HOM05D005628 ORTHO05D007348 1.1e-08 62.8 45 57.8
Pp3c13_21520 Physcomitrium patens HOM05D005628 ORTHO05D007348 3.2e-08 61.2 45 55.6
SGA_v2.0_scaffold58G20340 Striga asiatica HOM05D005628 ORTHO05D007348 1.2e-07 59.3 54 44.4


User provided reference genes

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