Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.1e-153 546.6 273 100.0
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 4.3e-126 454.9 273 82.8
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 9.7e-126 453.8 273 82.4
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 3.7e-125 451.8 273 82.1
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 5.0e-122 441.4 266 82.3
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 9.7e-118 427.2 269 77.7
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 3.7e-117 425.2 269 77.7
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.8e-116 422.9 275 76.7
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 3.1e-116 422.2 274 73.7
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 1.5e-115 419.9 240 85.0
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.5e-115 419.9 269 74.3
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 2.6e-115 419.1 275 76.0
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 3.4e-115 418.7 273 76.2
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 3.4e-115 418.7 274 73.7
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 1.3e-114 416.8 273 76.9
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.7e-114 416.4 274 76.6
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 3.8e-114 415.2 273 74.0
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 3.8e-114 415.2 269 73.6
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 5.0e-114 414.8 276 73.6
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 2.5e-113 412.5 276 72.8
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 3.2e-113 412.1 276 72.8
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 7.2e-113 411.0 274 72.6
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 9.4e-113 410.6 269 73.6
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 1.6e-112 409.8 269 72.9
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 2.1e-112 409.5 277 73.6
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 2.7e-112 409.1 275 73.5
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 4.7e-112 408.3 269 73.2
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 6.1e-112 407.9 246 79.7
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 7.9e-112 407.5 269 74.7
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 3.0e-111 405.6 277 72.2
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 3.0e-111 405.6 270 73.7
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 5.1e-111 404.8 279 71.7
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 8.8e-111 404.1 275 72.7
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 2.6e-110 402.5 269 74.7
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 5.7e-110 401.4 276 70.7
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 1.3e-109 400.2 274 72.3
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 1.7e-109 399.8 272 72.4
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 2.2e-109 399.4 276 69.9
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 2.2e-109 399.4 256 76.6
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 2.8e-109 399.1 269 72.5
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 2.8e-109 399.1 267 72.7
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 6.3e-109 397.9 273 71.4
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 1.1e-108 397.1 272 72.4
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.4e-108 396.7 274 73.0
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 1.8e-108 396.4 276 69.9
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 2.4e-108 396.0 276 68.8
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 5.3e-108 394.8 273 72.2
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 7.0e-108 394.4 273 71.4
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 9.1e-108 394.0 274 70.8
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.0e-107 392.9 273 70.0
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 2.0e-107 392.9 273 70.0
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 2.6e-107 392.5 273 71.1
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 4.5e-107 391.7 276 69.6
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 5.9e-107 391.3 269 71.0
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 5.9e-107 391.3 266 71.8
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 7.7e-107 391.0 273 71.1
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 7.7e-107 391.0 274 70.4
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.0e-106 390.6 273 71.1
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 1.0e-106 390.6 281 70.8
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.7e-106 389.8 271 69.4
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 2.2e-106 389.4 276 70.3
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.9e-106 389.0 276 69.6
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.1e-105 387.1 273 67.8
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.4e-105 386.7 273 67.8
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 4.2e-105 385.2 276 69.9
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 4.2e-105 385.2 277 70.4
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 1.2e-104 383.6 273 69.2
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 2.7e-104 382.5 281 65.1
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.7e-104 381.7 274 67.9
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 6.1e-104 381.3 273 67.8
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 8.0e-104 380.9 269 70.3
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.3e-103 379.4 277 68.2
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 3.0e-103 379.0 234 76.1
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.0e-103 379.0 277 68.2
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 3.9e-103 378.6 272 66.5
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 5.2e-103 378.3 277 68.2
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 5.2e-103 378.3 269 68.4
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 6.7e-103 377.9 235 75.7
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 1.5e-102 376.7 277 67.5
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 1.5e-102 376.7 269 68.4
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 3.3e-102 375.6 272 65.4
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 3.3e-102 375.6 237 78.1
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 5.7e-102 374.8 273 65.9
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 8.2e-101 370.9 273 67.8
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 1.4e-100 370.2 301 63.5
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 1.4e-100 370.2 270 66.7
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 1.8e-100 369.8 273 67.4
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 1.8e-100 369.8 274 67.2
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 3.1e-100 369.0 274 66.8
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 9.1e-100 367.5 267 68.2
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 1.6e-99 366.7 270 65.9
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 2.6e-99 365.9 278 64.7
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 4.5e-99 365.2 286 64.7
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 4.5e-99 365.2 271 67.5
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 1.3e-98 363.6 278 64.0
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 1.3e-98 363.6 278 64.0
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 2.9e-98 362.5 278 64.0
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 5.0e-98 361.7 278 64.0
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 5.0e-98 361.7 292 62.3
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 6.5e-98 361.3 278 63.7
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 8.5e-98 360.9 273 64.5
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 1.5e-97 360.1 278 63.3
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 1.9e-97 359.8 269 68.4
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 3.2e-97 359.0 278 62.9
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 5.5e-97 358.2 278 63.3
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 9.4e-97 357.5 277 62.5
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 9.4e-97 357.5 278 62.6
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.2e-96 357.1 273 62.6
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.2e-96 357.1 273 62.6
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 1.6e-96 356.7 284 60.2
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 1.6e-96 356.7 284 60.2
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 2.1e-96 356.3 271 63.8
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 2.1e-96 356.3 280 62.1
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 2.1e-96 356.3 272 62.1
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 2.7e-96 355.9 278 62.2
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 2.7e-96 355.9 230 72.2
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 3.6e-96 355.5 280 62.9
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 6.1e-96 354.8 279 62.7
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 6.1e-96 354.8 281 60.9
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 8.0e-96 354.4 278 61.9
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 1.8e-95 353.2 283 60.4
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 4.0e-95 352.1 282 59.2
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 7.5e-94 347.8 235 69.8
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 9.7e-94 347.4 282 59.6
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 9.7e-94 347.4 282 59.2
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 3.7e-93 345.5 283 59.7
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 3.7e-93 345.5 283 59.7
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 1.8e-92 343.2 271 63.8
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 2.4e-92 342.8 283 59.0
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 9.1e-92 340.9 284 58.8
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 9.1e-92 340.9 284 58.8
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 1.2e-91 340.5 282 58.5
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.0e-91 339.7 282 57.8
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 4.5e-91 338.6 250 66.4
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 1.6e-88 330.1 274 59.1
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 2.7e-88 329.3 271 59.8
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 4.0e-87 325.5 273 62.3
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.8e-87 324.7 273 61.9
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 6.8e-87 324.7 269 60.6
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 3.4e-86 322.4 271 59.0
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 7.5e-86 321.2 277 57.4
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 4.5e-83 312.0 246 63.8
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.9e-81 306.6 244 63.1
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 3.3e-81 305.8 257 59.5
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 1.5e-78 297.0 280 54.3
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 1.5e-78 297.0 273 56.0
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.0e-78 296.6 262 53.4
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 8.3e-77 291.2 181 74.0
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 4.3e-73 278.9 277 50.2
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 1.4e-71 273.9 198 66.2
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 3.4e-70 269.2 229 59.8
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 8.6e-66 254.6 235 50.2
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.2e-64 250.8 183 68.9
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 8.9e-63 244.6 155 77.4
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 6.4e-61 238.4 186 62.4
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 6.4e-61 238.4 280 43.9
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 2.7e-59 233.0 153 75.8
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 2.0e-54 216.9 152 67.8
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.1e-51 206.8 237 48.1
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 5.6e-49 198.7 206 50.0
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.8e-47 193.7 173 60.7
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 2.2e-45 186.8 234 39.7
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 4.2e-36 156.0 131 60.3
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.6e-35 154.1 131 59.5
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.6e-35 154.1 131 59.5
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 8.7e-26 121.7 113 54.0
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-25 118.6 119 43.7
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.4e-23 114.4 174 42.0
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.1e-18 95.9 74 58.1
Actinidia37164 Actinidia chinensis HOM05D004171 ORTHO05D057920 9.0e-07 58.5 68 47.1


User provided reference genes

Program Settings