Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.6e-158 562.0 286 100.0
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.0e-157 557.8 286 99.3
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 6.8e-106 387.9 324 65.1
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.5e-100 370.2 318 63.5
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.7e-96 355.5 360 56.9
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.9e-93 345.5 361 56.0
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.7e-88 330.1 328 57.9
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 3.3e-84 315.8 333 58.9
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 4.0e-82 308.9 318 55.0
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 2.0e-81 306.6 328 56.7
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 4.4e-81 305.4 329 53.2
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 7.6e-81 304.7 344 51.2
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.3e-77 293.9 343 49.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 2.3e-77 293.1 366 48.1
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 1.9e-76 290.0 341 49.9
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 5.6e-76 288.5 329 51.1
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.3e-75 287.3 364 48.6
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.6e-75 287.0 355 48.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 6.2e-75 285.0 379 47.0
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 8.1e-75 284.6 316 50.3
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.4e-74 283.1 316 50.0
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.1e-74 282.7 316 50.0
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.0e-74 282.3 349 47.9
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 5.3e-74 282.0 363 47.9
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 9.0e-74 281.2 351 48.1
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.6e-73 279.6 373 46.1
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.4e-73 279.3 362 45.9
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 5.8e-73 278.5 352 48.9
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 7.6e-73 278.1 337 48.4
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 6.4e-72 275.0 316 49.1
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 8.4e-72 274.6 352 47.4
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.9e-71 273.5 322 47.2
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 2.4e-71 273.1 308 52.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 9.3e-71 271.2 363 46.0
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.6e-70 270.4 308 51.9
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.6e-70 270.4 364 45.9
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 2.7e-70 269.6 377 44.3
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 3.9e-69 265.8 363 46.3
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 3.9e-69 265.8 363 46.3
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.5e-68 263.8 341 49.3
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.5e-68 263.8 350 44.3
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.2e-67 258.5 366 44.5
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.8e-66 256.9 295 49.2
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.4e-66 256.5 347 45.2
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 6.9e-66 255.0 340 45.6
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.0e-65 253.4 356 43.0
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.3e-64 250.8 290 50.0
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.7e-64 250.4 363 44.6
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.9e-63 246.9 264 52.3
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.9e-63 246.9 264 52.3
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.5e-63 246.5 297 49.5
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.5e-63 245.4 304 49.7
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 9.3e-63 244.6 321 46.1
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 9.3e-63 244.6 398 42.0
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.5e-60 237.3 310 47.7
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 9.6e-60 234.6 335 43.9
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 1.3e-59 234.2 327 45.3
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.4e-58 229.9 296 46.6
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.1e-58 229.6 334 42.5
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.1e-58 229.2 321 45.8
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.3e-58 228.8 336 42.0
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 6.9e-58 228.4 335 42.1
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 6.9e-58 228.4 336 41.4
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.2e-57 227.6 326 43.3
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.0e-56 224.6 315 46.3
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 5.0e-56 222.2 371 40.4
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.4e-55 220.7 402 39.1
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 4.2e-55 219.2 340 43.5
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 5.5e-55 218.8 324 42.3
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 6.1e-54 215.3 305 43.9
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.1e-53 212.2 363 38.3
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 8.7e-53 211.5 390 39.5
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 4.3e-52 209.1 319 42.0
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 4.3e-52 209.1 293 43.0
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.7e-52 208.8 291 44.0
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.7e-52 208.0 298 45.0
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 8.2e-51 204.9 334 41.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.1e-50 204.5 395 36.2
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 3.1e-50 203.0 295 42.0
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.1e-50 203.0 328 39.9
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 4.1e-50 202.6 289 43.6
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 4.1e-50 202.6 328 42.7
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 9.0e-50 201.4 282 44.7
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-49 201.1 324 39.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.2e-49 201.1 295 41.7
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-49 201.1 336 41.4
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.5e-49 200.7 333 36.9
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.6e-49 199.9 302 41.4
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 4.5e-49 199.1 305 43.6
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 7.7e-49 198.4 297 43.4
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.2e-47 192.6 295 42.4
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.5e-47 192.2 297 42.1
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 6.1e-46 188.7 294 43.5
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.8e-45 187.2 291 42.3
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.9e-45 186.0 362 35.9
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 6.7e-45 185.3 132 66.7
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-44 184.5 351 33.9
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.6e-44 183.3 320 39.1
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 9.7e-44 181.4 283 42.0
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.7e-43 180.6 343 38.5
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 4.8e-43 179.1 283 41.3
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 4.8e-43 179.1 283 41.3
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 6.3e-43 178.7 283 41.3
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 8.2e-43 178.3 294 40.8
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.8e-42 177.2 292 41.4
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 3.1e-42 176.4 290 41.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 5.9e-41 172.2 278 42.4
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 1.3e-40 171.0 278 42.4
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.3e-40 171.0 280 42.1
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.9e-40 169.9 285 40.7
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 3.2e-39 166.4 190 50.0
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.2e-39 166.0 304 38.2
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 7.2e-39 165.2 282 41.1
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 7.9e-38 161.8 437 32.0
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.7e-35 154.1 315 37.1
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.1e-34 149.8 138 55.8
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.5e-33 146.4 306 37.9
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.0e-32 144.8 343 35.9
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.0e-32 144.8 124 60.5
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 6.5e-32 142.1 137 51.8
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 6.5e-32 142.1 108 60.2
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.9e-31 140.6 323 35.0
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.2e-31 139.8 154 46.8
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.6e-30 137.5 304 35.5
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.6e-30 137.5 233 39.1
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.7e-30 136.7 283 37.1
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.7e-30 136.7 339 32.4
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 8.0e-30 135.2 344 33.4
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.4e-29 134.4 107 62.6
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 8.8e-29 131.7 109 58.7
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 4.4e-28 129.4 155 50.3
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 4.4e-28 129.4 155 50.3
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 9.7e-28 128.3 147 51.7
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.3e-27 127.9 319 35.1
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.3e-27 127.9 319 35.1
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.8e-27 126.7 298 36.9
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.7e-27 126.3 140 47.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.1e-26 124.8 279 31.2
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.1e-26 123.2 290 33.8
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.1e-26 123.2 286 33.6
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 4.1e-26 122.9 107 58.9
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 9.1e-26 121.7 104 57.7
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 9.1e-26 121.7 104 57.7
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.6e-25 120.9 298 34.2
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.6e-25 120.9 298 34.2
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.6e-25 120.9 298 34.2
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.7e-25 120.2 122 53.3
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 3.5e-25 119.8 134 50.0
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 7.7e-25 118.6 112 52.7
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-23 114.8 147 40.1
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.5e-23 114.4 73 78.1
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.9e-23 114.0 283 33.2
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 5.5e-23 112.5 159 44.0
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 7.2e-23 112.1 289 32.5
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.5e-20 104.4 244 32.8
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 3.4e-20 103.2 114 48.2
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.4e-20 103.2 73 68.5
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.4e-20 102.8 290 27.9
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.7e-19 100.9 331 30.2
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 3.7e-19 99.8 112 49.1
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.1e-18 98.2 338 29.3
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.1e-18 98.2 118 46.6
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.8e-18 97.4 291 27.1
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 3.1e-18 96.7 286 28.7
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 4.1e-18 96.3 144 41.7
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-15 88.2 251 31.5
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 1.0e-13 81.6 101 43.6
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 4.0e-13 79.7 98 44.9
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 6.8e-13 79.0 83 42.2
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 8.8e-13 78.6 98 42.9
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.2e-11 73.9 43 81.4
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 5.0e-08 62.8 257 24.5
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 6.6e-08 62.4 94 35.1
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 7.3e-07 58.9 95 33.7
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 4.7e-06 56.2 111 31.5
unitig_37.g13077 Utricularia gibba HOM05D003874 ORTHO05D030560 8.0e-06 55.5 122 32.0


User provided reference genes

Program Settings