Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 8.1e-167 590.5 335 100.0
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 4.5e-165 584.7 335 98.8
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 7.2e-115 417.9 255 85.5
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.2e-113 411.8 251 82.5
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 6.7e-113 411.4 251 82.5
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 5.7e-112 408.3 253 79.8
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 4.8e-111 405.2 248 81.9
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 2.5e-107 392.9 263 75.3
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 4.2e-107 392.1 275 73.5
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 5.5e-107 391.7 263 76.0
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.6e-106 390.2 242 80.6
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 2.1e-106 389.8 273 75.1
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 4.7e-106 388.7 274 75.2
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 4.7e-106 388.7 261 78.5
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.4e-105 387.1 239 80.3
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 3.0e-105 386.0 244 80.3
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 4.0e-105 385.6 275 71.3
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 1.2e-104 384.0 250 77.2
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 1.2e-104 384.0 262 71.8
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 2.0e-104 383.3 249 76.7
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 2.0e-104 383.3 247 76.1
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 2.6e-104 382.9 263 74.1
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 3.4e-104 382.5 253 77.1
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 7.5e-104 381.3 262 71.4
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 9.8e-104 380.9 257 75.5
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.3e-103 380.6 249 76.7
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 1.7e-103 380.2 262 72.5
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 8.3e-103 377.9 249 75.9
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 1.1e-102 377.5 242 78.5
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.4e-102 377.1 247 76.5
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 2.4e-102 376.3 245 76.7
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 2.4e-102 376.3 247 76.1
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 3.1e-102 375.9 247 75.7
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 5.4e-102 375.2 245 75.5
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 5.4e-102 375.2 248 76.2
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 5.4e-102 375.2 264 72.3
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 7.0e-102 374.8 244 76.6
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 7.0e-102 374.8 245 75.5
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.2e-101 374.0 242 76.4
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.6e-101 373.6 245 75.5
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 7.7e-101 371.3 245 73.9
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.7e-100 370.2 263 71.9
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.7e-100 370.2 242 76.9
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.7e-100 370.2 264 70.1
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.9e-100 369.4 253 74.3
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 3.8e-100 369.0 259 72.2
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 3.8e-100 369.0 279 67.7
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 3.8e-100 369.0 244 73.4
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 6.5e-100 368.2 245 73.1
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 6.5e-100 368.2 242 76.0
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.1e-99 367.5 252 72.6
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.1e-99 367.5 249 73.5
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.5e-99 367.1 246 74.8
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 5.5e-99 365.2 252 71.8
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 7.2e-99 364.8 263 70.3
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 7.2e-99 364.8 227 77.1
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.2e-98 364.0 252 71.4
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 2.1e-98 363.2 254 72.4
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 8.0e-98 361.3 247 73.3
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.0e-97 360.9 258 70.5
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 1.4e-97 360.5 245 73.1
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.8e-97 360.1 270 69.3
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 3.0e-97 359.4 240 75.0
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 3.0e-97 359.4 247 72.5
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 3.0e-97 359.4 246 72.0
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 8.8e-97 357.8 247 74.1
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 2.0e-96 356.7 237 73.0
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 3.4e-96 355.9 245 72.2
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 9.8e-96 354.4 259 67.6
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.3e-95 354.0 237 74.7
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.7e-95 353.6 261 68.2
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 2.8e-95 352.8 236 73.7
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 4.9e-95 352.1 232 74.6
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 4.9e-95 352.1 237 73.8
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 4.9e-95 352.1 268 70.1
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 6.3e-95 351.7 237 74.3
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 8.3e-95 351.3 311 62.4
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 2.4e-94 349.7 241 71.4
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 2.4e-94 349.7 236 73.3
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 4.1e-94 349.0 243 72.4
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.2e-93 347.4 244 70.1
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.7e-93 346.3 224 74.6
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 5.9e-93 345.1 265 65.3
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 5.9e-93 345.1 244 67.2
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 1.7e-92 343.6 251 67.7
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 2.3e-92 343.2 245 69.8
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 3.8e-92 342.4 232 72.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 4.7e-90 335.5 267 65.2
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 5.2e-89 332.0 236 70.3
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 3.7e-87 325.9 201 82.1
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 6.4e-87 325.1 244 70.1
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.4e-86 323.9 229 70.3
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 5.4e-86 322.0 234 72.2
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 2.0e-85 320.1 212 75.0
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 5.9e-85 318.5 222 72.5
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 7.8e-85 318.2 251 64.1
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 1.2e-82 310.8 225 71.6
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.4e-81 307.4 267 61.4
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 4.1e-78 295.8 248 59.7
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 4.1e-78 295.8 212 69.3
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 2.0e-77 293.5 251 61.0
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 7.8e-77 291.6 268 55.6
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 3.3e-75 286.2 206 69.4
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 7.3e-75 285.0 261 58.2
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 8.9e-73 278.1 180 77.2
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 3.7e-71 272.7 255 56.5
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.6e-66 257.3 265 55.5
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 8.4e-63 245.0 140 80.0
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.6e-50 204.1 149 69.1
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 4.9e-47 192.6 223 47.5
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 7.1e-46 188.7 216 47.2
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.9e-38 164.1 214 42.5
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.8e-33 147.5 124 60.5
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 6.9e-33 145.6 88 78.4
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.0e-31 141.7 137 57.7
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 4.2e-22 109.8 82 63.4
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.6e-21 107.8 56 89.3
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 3.0e-20 103.6 66 74.2
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.1e-19 101.7 68 66.2
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 2.5e-19 100.5 111 51.4
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 2.4e-17 94.0 136 43.4
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 5.3e-17 92.8 58 74.1
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 5.9e-16 89.4 63 63.5
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.5e-14 84.0 64 62.5
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 9.4e-14 82.0 51 74.5
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 2.7e-13 80.5 50 76.0
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 6.1e-13 79.3 49 75.5
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 6.1e-13 79.3 175 34.3
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 7.9e-13 79.0 170 35.9
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.1e-11 75.1 92 54.3
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 1.5e-11 74.7 53 66.0
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 7.0e-09 65.9 43 67.4
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 1.5e-08 64.7 81 44.4


User provided reference genes

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