Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009233 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D019491 6.8e-36 153.3 69 100.0
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.2e-09 64.3 29 100.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 4.6e-08 60.8 28 96.4
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 4.6e-08 60.8 29 89.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 1.8e-07 58.9 29 86.2
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 2.3e-07 58.5 29 86.2
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 3.0e-07 58.2 29 86.2
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 3.0e-07 58.2 29 82.8
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 3.9e-07 57.8 29 82.8
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 3.9e-07 57.8 29 82.8
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 5.1e-07 57.4 32 78.1
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 5.1e-07 57.4 32 78.1
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 5.1e-07 57.4 29 82.8
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 6.7e-07 57.0 29 82.8
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 6.7e-07 57.0 29 82.8
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 6.7e-07 57.0 32 71.9
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 6.7e-07 57.0 29 82.8
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 6.7e-07 57.0 29 82.8
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 6.7e-07 57.0 29 86.2
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 8.7e-07 56.6 29 79.3
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 8.7e-07 56.6 29 79.3
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 8.7e-07 56.6 29 82.8
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 8.7e-07 56.6 29 82.8
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 8.7e-07 56.6 29 82.8
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 8.7e-07 56.6 29 75.9
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 8.7e-07 56.6 29 75.9
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 1.1e-06 56.2 29 82.8
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 1.1e-06 56.2 29 82.8
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 1.1e-06 56.2 32 78.1
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 1.1e-06 56.2 29 79.3
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.1e-06 56.2 29 82.8
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 1.5e-06 55.8 29 82.8
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 1.5e-06 55.8 29 82.8
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 1.9e-06 55.5 29 79.3
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 1.9e-06 55.5 29 79.3
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 1.9e-06 55.5 44 52.3
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 1.9e-06 55.5 29 79.3
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 1.9e-06 55.5 29 79.3
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 1.9e-06 55.5 29 82.8
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.9e-06 55.5 29 79.3
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 2.5e-06 55.1 28 85.7
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 2.5e-06 55.1 28 85.7
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 2.5e-06 55.1 29 82.8
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 3.3e-06 54.7 29 75.9
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 3.3e-06 54.7 32 75.0
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 3.3e-06 54.7 29 79.3
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.3e-06 54.7 29 75.9
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 3.3e-06 54.7 29 75.9
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 3.3e-06 54.7 29 75.9
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 3.3e-06 54.7 29 75.9
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 4.3e-06 54.3 29 79.3
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 4.3e-06 54.3 29 79.3
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 4.3e-06 54.3 29 79.3
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 4.3e-06 54.3 49 49.0
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 4.3e-06 54.3 29 79.3
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 5.6e-06 53.9 29 79.3
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 5.6e-06 53.9 29 82.8
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 5.6e-06 53.9 29 72.4
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 5.6e-06 53.9 29 72.4
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 5.6e-06 53.9 43 58.1
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 7.4e-06 53.5 28 78.6
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 7.4e-06 53.5 28 78.6
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 7.4e-06 53.5 29 75.9
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 7.4e-06 53.5 29 75.9
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 7.4e-06 53.5 29 75.9
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 7.4e-06 53.5 29 75.9
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 7.4e-06 53.5 28 78.6
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 7.4e-06 53.5 28 78.6
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 7.4e-06 53.5 28 78.6
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 7.4e-06 53.5 29 75.9
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 9.6e-06 53.1 29 72.4
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 9.6e-06 53.1 29 72.4
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 9.6e-06 53.1 29 72.4
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 9.6e-06 53.1 29 75.9


User provided reference genes

Program Settings