Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.8e-85 317.8 157 100.0
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.3e-78 295.0 157 94.3
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.6e-75 283.9 147 95.9
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.6e-75 283.9 147 95.9
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 7.1e-73 277.3 147 94.6
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 2.6e-67 258.8 147 83.7
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 5.5e-65 251.1 147 79.6
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 7.1e-65 250.8 147 81.6
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.2e-64 250.0 147 84.4
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 1.0e-63 246.9 148 82.4
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 2.3e-63 245.7 147 80.3
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 3.0e-63 245.4 148 82.4
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 3.9e-63 245.0 147 78.9
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 8.7e-63 243.8 147 78.2
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 4.3e-62 241.5 147 76.9
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 4.3e-62 241.5 147 75.5
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 4.3e-62 241.5 147 75.5
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 9.7e-62 240.4 147 76.9
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 9.7e-62 240.4 148 81.1
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 9.7e-62 240.4 147 76.2
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 9.7e-62 240.4 147 77.6
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 1.3e-61 240.0 148 77.7
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 1.3e-61 240.0 147 76.9
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.1e-61 239.2 147 78.2
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 2.8e-61 238.8 149 76.5
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 3.7e-61 238.4 148 79.7
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 3.7e-61 238.4 148 80.4
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 3.7e-61 238.4 147 78.2
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 4.8e-61 238.0 147 78.2
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 4.8e-61 238.0 148 77.7
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 4.8e-61 238.0 148 79.1
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 6.3e-61 237.7 147 75.5
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 8.2e-61 237.3 150 73.3
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 8.2e-61 237.3 147 75.5
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.1e-60 236.9 147 74.8
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.1e-60 236.9 148 79.1
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.1e-60 236.9 148 75.7
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 1.8e-60 236.1 147 73.5
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 2.4e-60 235.7 148 77.7
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 3.1e-60 235.3 148 77.0
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 4.1e-60 235.0 147 75.5
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 4.1e-60 235.0 148 75.0
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 6.9e-60 234.2 148 75.0
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 6.9e-60 234.2 148 73.6
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 9.0e-60 233.8 148 76.4
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 9.0e-60 233.8 148 77.7
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 1.2e-59 233.4 148 77.0
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 1.2e-59 233.4 148 75.7
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.5e-59 233.0 148 76.4
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 2.0e-59 232.6 147 75.5
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 2.6e-59 232.3 149 76.5
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 7.6e-59 230.7 148 75.7
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 7.6e-59 230.7 148 75.7
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 7.6e-59 230.7 148 75.7
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 1.0e-58 230.3 148 75.7
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 1.3e-58 229.9 146 77.4
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.7e-58 229.6 148 75.0
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 2.2e-58 229.2 148 75.7
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 2.9e-58 228.8 147 74.1
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 2.9e-58 228.8 148 74.3
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 3.8e-58 228.4 147 74.1
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 3.8e-58 228.4 148 77.0
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 3.8e-58 228.4 147 72.1
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 3.8e-58 228.4 148 74.3
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 5.0e-58 228.0 148 74.3
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 6.5e-58 227.6 148 75.0
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 6.5e-58 227.6 147 72.8
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 6.5e-58 227.6 147 75.5
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 8.5e-58 227.3 148 74.3
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.9e-57 226.1 148 75.0
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 2.5e-57 225.7 148 77.0
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.5e-57 225.7 147 72.8
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 3.2e-57 225.3 148 73.6
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 3.2e-57 225.3 148 73.0
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 3.2e-57 225.3 148 73.6
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 4.2e-57 224.9 148 72.3
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 7.2e-57 224.2 148 73.6
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 7.2e-57 224.2 148 75.7
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 9.3e-57 223.8 148 73.0
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.2e-56 223.4 148 72.3
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.2e-56 223.4 148 73.6
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.2e-56 223.4 148 73.6
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 1.6e-56 223.0 148 75.7
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 2.7e-56 222.2 148 72.3
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 3.6e-56 221.9 148 73.0
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 3.6e-56 221.9 148 75.7
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 3.6e-56 221.9 147 70.1
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 4.6e-56 221.5 151 72.2
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 4.6e-56 221.5 148 73.0
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 6.1e-56 221.1 148 72.3
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.0e-55 220.3 148 73.0
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.3e-55 219.9 148 71.6
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.3e-55 219.9 147 69.4
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 2.3e-55 219.2 147 70.1
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 5.1e-55 218.0 148 70.9
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 1.5e-54 216.5 148 73.0
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 5.7e-54 214.5 144 75.0
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 3.1e-52 208.8 148 67.6
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 4.1e-52 208.4 165 65.5
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 1.2e-51 206.8 139 67.6
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 3.4e-51 205.3 148 68.2
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 1.1e-49 200.3 119 77.3
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 2.7e-48 195.7 129 74.4
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 6.1e-48 194.5 148 69.6
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 4.4e-46 188.3 140 63.6
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 1.4e-39 166.8 140 60.7
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 3.0e-39 165.6 148 62.2
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.7e-37 159.8 142 54.9
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 4.1e-36 155.2 116 69.0
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 5.3e-36 154.8 157 54.8
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 1.2e-35 153.7 148 54.7
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 7.7e-35 151.0 141 52.5
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 9.4e-33 144.1 89 77.5
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.2e-30 137.1 139 51.1
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 6.3e-29 131.3 147 50.3
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 6.3e-29 131.3 133 51.1
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.8e-28 129.8 81 80.2
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 1.2e-27 127.1 140 45.0
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 2.9e-26 122.5 164 42.1
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 2.3e-23 112.8 140 42.1
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 5.9e-19 98.2 66 68.2
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 2.0e-06 56.6 31 77.4


User provided reference genes

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