Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009203 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.1e-127 459.9 226 100.0
CSS0016029 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 1.1e-127 459.9 226 100.0
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 6.6e-112 407.5 217 91.2
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 4.0e-101 371.7 220 81.8
Dinv15773 Davidia involucrata HOM05D003511 ORTHO05D004403 5.2e-101 371.3 219 81.7
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 9.8e-100 367.1 219 80.8
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.7e-99 366.3 218 83.5
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.7e-99 366.3 218 83.5
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 4.6e-97 358.2 228 76.3
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 6.0e-97 357.8 218 80.3
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 6.2e-94 347.8 221 74.7
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 6.8e-93 344.4 221 74.2
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 8.9e-93 344.0 229 72.9
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 4.4e-92 341.7 228 73.2
RcHm_v2.0_Chr6g0254581 Rosa chinensis HOM05D003511 ORTHO05D004403 5.8e-92 341.3 229 72.5
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 7.6e-92 340.9 229 73.4
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 9.9e-92 340.5 229 72.9
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.3e-91 340.1 228 73.2
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 1.7e-91 339.7 228 72.4
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 1.7e-91 339.7 220 75.9
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 1.7e-91 339.7 210 79.0
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 2.9e-91 339.0 229 72.9
vmacro02524 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 3.7e-91 338.6 219 74.9
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 6.4e-91 337.8 242 69.4
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.4e-90 336.7 220 75.5
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 1.9e-90 336.3 220 72.7
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 4.1e-90 335.1 219 74.9
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 7.1e-90 334.3 220 74.1
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 1.2e-89 333.6 219 72.6
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 1.6e-89 333.2 227 69.6
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 2.1e-89 332.8 219 71.7
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 3.5e-89 332.0 227 69.6
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 3.5e-89 332.0 219 72.6
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.0e-88 330.5 227 69.6
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 1.0e-88 330.5 220 72.3
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.3e-88 329.3 220 73.6
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 3.9e-88 328.6 222 71.2
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 5.1e-88 328.2 220 72.3
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 6.6e-88 327.8 228 68.4
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 1.5e-87 326.6 220 71.4
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 1.5e-87 326.6 223 69.5
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 1.9e-87 326.2 215 73.0
MD10G1099400 Malus domestica HOM05D003511 ORTHO05D004403 3.3e-87 325.5 220 72.3
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 1.2e-86 323.6 219 73.1
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 4.7e-86 321.6 230 67.8
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 6.2e-86 321.2 223 69.1
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 6.2e-86 321.2 230 67.8
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 1.1e-85 320.5 219 70.3
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 1.4e-85 320.1 224 70.1
TAR381G0463 Trochodendron aralioides HOM05D003511 ORTHO05D004403 1.8e-85 319.7 217 71.4
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 1.2e-84 317.0 222 68.5
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 5.8e-84 314.7 230 67.4
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 1.7e-83 313.2 228 68.0
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 1.7e-83 313.2 222 69.4
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 2.9e-83 312.4 224 67.9
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 3.8e-83 312.0 223 67.3
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 8.4e-83 310.8 218 66.1
Psat6g217200 Pisum sativum HOM05D003511 ORTHO05D004403 8.4e-83 310.8 224 67.0
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 1.4e-82 310.1 219 68.9
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 1.4e-82 310.1 216 69.0
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 1.4e-82 310.1 219 69.9
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 3.2e-82 308.9 221 68.3
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 3.2e-82 308.9 218 66.1
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 9.3e-82 307.4 222 68.0
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 1.2e-81 307.0 220 69.5
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 2.1e-81 306.2 221 67.0
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 2.7e-81 305.8 220 68.2
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 2.7e-81 305.8 227 64.8
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 2.7e-81 305.8 195 75.4
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 4.6e-81 305.1 216 68.5
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 2.3e-80 302.8 192 75.5
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 5.1e-80 301.6 229 64.6
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 8.7e-80 300.8 223 66.4
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 7.3e-79 297.7 218 67.9
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 1.6e-78 296.6 206 69.4
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 2.8e-78 295.8 220 65.5
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 3.6e-78 295.4 197 71.6
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 6.2e-78 294.7 217 67.3
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 8.1e-78 294.3 225 65.8
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 2.4e-77 292.7 210 69.0
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 4.0e-77 292.0 211 66.8
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 5.3e-77 291.6 216 64.4
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 5.3e-77 291.6 207 70.0
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 5.3e-77 291.6 219 63.9
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 6.9e-77 291.2 218 66.5
Sabra16G0187700 Salix brachista HOM05D003511 ORTHO05D004403 6.9e-77 291.2 291 53.3
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 9.0e-77 290.8 218 66.5
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 2.6e-76 289.3 223 65.0
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 3.4e-76 288.9 221 65.2
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 4.4e-76 288.5 227 62.6
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 5.8e-76 288.1 219 62.6
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 5.8e-76 288.1 223 63.7
MELO3C019553.2 Cucumis melo HOM05D003511 ORTHO05D004403 7.6e-76 287.7 216 68.5
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 7.6e-76 287.7 211 64.0
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 9.9e-76 287.3 196 70.4
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.3e-75 287.0 222 64.4
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 3.8e-75 285.4 214 68.2
Sed0023024 Sechium edule HOM05D003511 ORTHO05D004403 4.9e-75 285.0 196 72.4
MBI16_g33969_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 1.4e-74 283.5 216 63.0
Medtr4g127370 Medicago truncatula HOM05D003511 ORTHO05D004403 1.4e-74 283.5 222 63.5
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 4.2e-74 282.0 210 68.6
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 5.4e-74 281.6 208 68.3
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 5.4e-74 281.6 226 63.7
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 9.3e-74 280.8 192 70.8
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 1.2e-73 280.4 206 66.0
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 2.7e-73 279.3 184 73.4
MBI16_g16349_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 4.6e-73 278.5 216 62.0
CSS0038772 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 6.0e-73 278.1 150 92.0
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 6.0e-73 278.1 208 67.3
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 7.9e-73 277.7 211 63.5
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 7.9e-73 277.7 218 62.4
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.0e-72 277.3 218 61.5
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 1.3e-72 276.9 219 64.4
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 1.7e-72 276.6 192 70.3
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 3.0e-72 275.8 223 65.5
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 6.6e-72 274.6 211 63.0
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 2.5e-71 272.7 207 62.8
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 2.5e-71 272.7 235 60.9
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 3.3e-71 272.3 193 69.4
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 4.3e-71 271.9 184 71.7
Potri.001G298900 Populus trichocarpa HOM05D003511 ORTHO05D004403 5.6e-71 271.6 218 60.6
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 2.1e-70 269.6 224 59.8
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 3.6e-70 268.9 209 63.2
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 4.8e-70 268.5 177 74.0
Ah.01g010970 Amaranthus hybridus HOM05D003511 ORTHO05D004403 6.2e-70 268.1 219 61.6
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 1.1e-69 267.3 190 68.9
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 1.1e-69 267.3 241 59.3
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 3.4e-68 262.3 191 67.5
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 9.9e-68 260.8 210 59.5
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 1.3e-67 260.4 194 63.4
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 3.8e-67 258.8 194 62.9
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 3.8e-67 258.8 194 63.4
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 3.2e-66 255.8 213 62.4
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 5.5e-66 255.0 192 63.5
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 5.5e-66 255.0 192 63.5
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 5.5e-66 255.0 192 63.5
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 3.0e-64 249.2 192 62.5
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 3.9e-64 248.8 194 62.4
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 3.9e-64 248.8 192 62.5
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 9.6e-63 244.2 150 80.7
SEGI_03881 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 2.1e-62 243.0 219 54.3
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.4e-61 240.4 186 66.1
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 5.8e-60 235.0 198 60.6
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 1.0e-59 234.2 219 53.4
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 1.0e-59 234.2 191 62.3
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 4.9e-59 231.9 199 60.3
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 1.1e-55 220.7 220 53.6
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 1.3e-51 207.2 194 53.6
Zm00001eb027590 Zea mays HOM05D003511 ORTHO05D004403 1.7e-51 206.8 220 51.8
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 4.2e-50 202.2 131 72.5
SMO116G0225 Selaginella moellendorffii HOM05D003511 ORTHO05D004403 8.2e-46 188.0 188 49.5
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 3.1e-45 186.0 153 62.1
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 4.6e-41 172.2 189 46.0
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 8.8e-40 167.9 103 78.6
CSS0034894 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 5.3e-37 158.7 118 66.9
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 5.0e-35 152.1 106 70.8
Glyma.10G260750 Glycine max HOM05D003511 ORTHO05D004403 6.1e-33 145.2 114 61.4
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 3.0e-32 142.9 101 72.3
Lsat_1_v5_gn_5_116340 Lactuca sativa HOM05D003511 ORTHO05D004403 4.5e-28 129.0 96 66.7
SEGI_08198 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 1.7e-27 127.1 167 41.9
AagrBONN_evm.TU.Sc2ySwM_344.4245 Anthoceros agrestis HOM05D003511 ORTHO05D004403 2.1e-25 120.2 133 45.9
SEGI_08298 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 3.6e-25 119.4 100 58.0
Lj5A215G56 Lonicera japonica HOM05D003511 ORTHO05D004403 6.1e-17 92.0 69 62.3
Medtr1g107145 Medicago truncatula HOM05D003511 ORTHO05D004403 6.5e-11 72.0 49 61.2


User provided reference genes

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