Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 5.7e-154 547.7 315 100.0
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.8e-115 419.9 332 80.7
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 5.1e-38 162.5 137 89.8
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 1.2e-34 151.4 144 85.4
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 7.7e-34 148.7 137 86.9
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 1.9e-32 144.1 158 77.8
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 5.5e-32 142.5 139 83.5
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 5.5e-32 142.5 143 83.2
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 7.2e-32 142.1 140 81.4
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 7.2e-32 142.1 140 83.6
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 2.1e-31 140.6 133 86.5
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 3.6e-31 139.8 144 81.2
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 3.6e-31 139.8 137 84.7
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 4.7e-31 139.4 139 82.7
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 4.7e-31 139.4 138 81.2
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 4.7e-31 139.4 136 82.4
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 7.9e-31 138.7 136 80.1
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 1.0e-30 138.3 191 66.5
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 1.4e-30 137.9 163 75.5
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 5.1e-30 136.0 141 82.3
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 1.5e-29 134.4 144 75.7
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 2.0e-29 134.0 144 79.2
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 2.6e-29 133.7 155 73.5
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 2.6e-29 133.7 126 88.9
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 3.3e-29 133.3 141 81.6
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 5.7e-29 132.5 144 78.5
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 5.7e-29 132.5 143 77.6
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 5.7e-29 132.5 157 72.6
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 9.7e-29 131.7 137 82.5
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 1.3e-28 131.3 170 68.2
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 1.7e-28 131.0 136 81.6
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 3.7e-28 129.8 138 80.4
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 1.4e-27 127.9 130 83.8
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 1.2e-26 124.8 124 85.5
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 1.5e-26 124.4 144 77.1
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 1.5e-26 124.4 124 85.5
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 2.0e-26 124.0 136 80.1
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 3.4e-26 123.2 139 79.1
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 5.9e-26 122.5 197 57.4
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 1.3e-25 121.3 136 80.1
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 1.7e-25 120.9 129 83.7
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 2.2e-25 120.6 136 78.7
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 2.2e-25 120.6 138 78.3
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 2.9e-25 120.2 140 78.6
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 2.9e-25 120.2 124 86.3
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 3.8e-25 119.8 144 72.2
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 5.0e-25 119.4 123 85.4
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 5.0e-25 119.4 140 77.9
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 6.5e-25 119.0 140 78.6
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 6.5e-25 119.0 140 78.6
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 8.5e-25 118.6 137 77.4
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 2.5e-24 117.1 140 77.9
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 4.2e-24 116.3 144 75.0
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 4.2e-24 116.3 139 76.3
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 1.6e-23 114.4 144 73.6
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 2.7e-23 113.6 123 82.9
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 2.7e-23 113.6 156 69.2
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 4.7e-23 112.8 139 75.5
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 8.0e-23 112.1 126 81.7
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 1.0e-22 111.7 122 82.8
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 1.4e-22 111.3 131 77.1
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 1.4e-22 111.3 139 74.8
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 3.9e-22 109.8 122 82.8
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 3.9e-22 109.8 139 74.8
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 3.9e-22 109.8 122 82.8
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 5.2e-22 109.4 129 77.5
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 5.2e-22 109.4 135 76.3
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 6.7e-22 109.0 127 78.7
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 8.8e-22 108.6 153 69.9
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 8.8e-22 108.6 148 68.9
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 2.0e-21 107.5 124 79.8
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 5.7e-21 105.9 117 83.8
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 5.7e-21 105.9 138 76.1
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 7.4e-21 105.5 131 74.8
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 7.4e-21 105.5 124 81.5
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 1.3e-20 104.8 89 83.1
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 1.3e-20 104.8 136 77.2
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 1.7e-20 104.4 137 71.5
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 2.2e-20 104.0 124 82.3
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 2.8e-20 103.6 65 83.1
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 2.8e-20 103.6 124 81.5
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 3.7e-20 103.2 124 75.0
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 4.8e-20 102.8 146 65.1
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 8.2e-20 102.1 138 47.8
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 1.4e-19 101.3 139 74.1
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 1.8e-19 100.9 118 80.5
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 1.8e-19 100.9 118 80.5
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 2.4e-19 100.5 138 69.6
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 2.4e-19 100.5 122 78.7
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 3.1e-19 100.1 118 79.7
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 3.1e-19 100.1 118 79.7
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 5.3e-19 99.4 118 79.7
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 7.0e-19 99.0 139 73.4
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 1.2e-18 98.2 127 74.8
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 2.6e-18 97.1 88 78.4
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 2.6e-18 97.1 65 76.9
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 3.5e-18 96.7 124 78.2
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 5.9e-18 95.9 65 73.8
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 5.9e-18 95.9 88 77.3
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 1.0e-17 95.1 121 77.7
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 8.5e-17 92.0 88 76.1
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 1.1e-16 91.7 88 73.9
Actinidia04818 Actinidia chinensis HOM05D007161 ORTHO05D009103 2.7e-15 87.0 98 88.8
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 6.1e-15 85.9 164 61.0
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 8.0e-15 85.5 137 64.2
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 1.4e-14 84.7 145 65.5
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 3.3e-13 80.1 77 55.8
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 1.8e-11 74.3 65 61.5
unitig_0.g5 Utricularia gibba HOM05D000887 ORTHO05D000908 6.1e-07 59.3 99 76.8


User provided reference genes

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