Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009195 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 5.0e-141 504.6 286 100.0
CSS0021349 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 3.0e-29 133.3 132 59.8
Lj4A109T45 Lonicera japonica HOM05D007007 ORTHO05D008335 1.2e-25 121.3 132 53.8
Sp5g33080 Schrenkiella parvula HOM05D007007 ORTHO05D008335 1.2e-25 121.3 132 54.5
SGA_v2.0_scaffold28G11941 Striga asiatica HOM05D001694 ORTHO05D000248 1.2e-25 121.3 132 53.8
THA.LOC104800169 Tarenaya hassleriana HOM05D007007 ORTHO05D008335 1.2e-25 121.3 132 54.5
MSTRG.24958 Avicennia marina HOM05D007007 ORTHO05D008335 1.6e-25 120.9 132 54.5
Cpa.g.sc49.113 Carica papaya HOM05D007007 ORTHO05D008335 1.6e-25 120.9 132 53.8
Oeu035395.1 Olea europaea HOM05D007007 ORTHO05D008335 1.6e-25 120.9 132 53.0
Migut.N02916 Erythranthe guttata HOM05D007007 ORTHO05D008335 2.0e-25 120.6 132 53.8
Sed0027281 Sechium edule HOM05D007007 ORTHO05D008335 2.0e-25 120.6 132 51.5
A07p27780 Brassica napus HOM05D000382 ORTHO05D008335 2.7e-25 120.2 132 53.8
BraA07t30417Z Brassica rapa HOM05D000382 ORTHO05D008335 2.7e-25 120.2 132 53.8
Dinv13068 Davidia involucrata HOM05D007007 ORTHO05D008335 2.7e-25 120.2 132 54.5
BcaB02g07139 Brassica carinata HOM05D007007 ORTHO05D008335 3.5e-25 119.8 132 53.8
BcaC08g45443 Brassica carinata HOM05D007007 ORTHO05D008335 3.5e-25 119.8 132 53.8
C06p30730 Brassica napus HOM05D000382 ORTHO05D008335 3.5e-25 119.8 132 53.8
Thhalv10018996m.g Eutrema salsugineum HOM05D007007 ORTHO05D008335 3.5e-25 119.8 132 53.8
Gohir.A01G187200 Gossypium hirsutum HOM05D007007 ORTHO05D008335 3.5e-25 119.8 131 53.4
Gohir.D01G182500 Gossypium hirsutum HOM05D007007 ORTHO05D008335 3.5e-25 119.8 131 53.4
AL2G38190 Arabidopsis lyrata HOM05D007007 ORTHO05D008335 4.5e-25 119.4 132 53.8
Gorai.002G219900 Gossypium raimondii HOM05D007007 ORTHO05D008335 7.7e-25 118.6 131 52.7
AT1G77930 Arabidopsis thaliana HOM05D007007 ORTHO05D008335 1.7e-24 117.5 132 53.8
Carub.0002s2481 Capsella rubella HOM05D007007 ORTHO05D008335 2.9e-24 116.7 131 52.7
Lsat_1_v5_gn_6_101981 Lactuca sativa HOM05D007007 ORTHO05D008335 2.9e-24 116.7 132 50.8
CsaV3_6G035710 Cucumis sativus L. HOM05D007007 ORTHO05D008335 5.0e-24 115.9 132 50.8
ECA246G4837 Erigeron canadensis HOM05D000382 ORTHO05D008335 6.5e-24 115.5 132 50.0
Nn1g05208 Nelumbo nucifera HOM05D007007 ORTHO05D008335 8.5e-24 115.2 132 50.8
Nitab4.5_0006745g0010 Nicotiana tabacum HOM05D007007 ORTHO05D008335 1.1e-23 114.8 132 50.0
Thecc.08G115100 Theobroma cacao HOM05D007007 ORTHO05D008335 1.1e-23 114.8 130 51.5
unitig_578.g16208 Utricularia gibba HOM05D007007 ORTHO05D008335 1.1e-23 114.8 140 48.6
Aa31LG4G8000 Aethionema arabicum HOM05D007007 ORTHO05D008335 1.5e-23 114.4 132 52.3
TAR381G0384 Trochodendron aralioides HOM05D007007 ORTHO05D008335 1.5e-23 114.4 132 50.8
Peaxi162Scf00160g01640 Petunia axillaris HOM05D007007 ORTHO05D008335 1.9e-23 114.0 132 50.8
PGR042G1361 Punica granatum HOM05D007007 ORTHO05D008335 1.9e-23 114.0 131 51.1
Solyc12g056850.2 Solanum lycopersicum HOM05D007007 ORTHO05D008335 1.9e-23 114.0 132 49.2
PGSC0003DMG400016952 Solanum tuberosum HOM05D007007 ORTHO05D008335 2.5e-23 113.6 132 49.2
Cc10_g06060 Coffea canephora HOM05D007007 ORTHO05D008335 3.2e-23 113.2 127 53.5
FAN04G0256 Fragaria x ananassa HOM05D007007 ORTHO05D008335 5.5e-23 112.5 132 50.0
FAN08G0847 Fragaria x ananassa HOM05D000382 ORTHO05D008335 5.5e-23 112.5 132 50.0
FAN18G4539 Fragaria x ananassa HOM05D000382 ORTHO05D008335 5.5e-23 112.5 132 50.0
Nitab4.5_0000425g0200 Nicotiana tabacum HOM05D007007 ORTHO05D008335 5.5e-23 112.5 132 49.2
CAN.G47.18 Capsicum annuum HOM05D007007 ORTHO05D008335 7.2e-23 112.1 132 48.5
Lj1g0002230 Lotus japonicus HOM05D007007 ORTHO05D008335 7.2e-23 112.1 132 49.2
Sopen12g029530 Solanum pennellii HOM05D007007 ORTHO05D008335 7.2e-23 112.1 132 48.5
AUR62043509 Chenopodium quinoa HOM05D007007 ORTHO05D008335 1.2e-22 111.3 132 48.5
GSVIVG01008959001 Vitis vinifera HOM05D007007 ORTHO05D008335 1.2e-22 111.3 132 50.8
ATR0564G456 Amborella trichopoda HOM05D007007 ORTHO05D008335 1.6e-22 110.9 132 49.2
AUR62022326 Chenopodium quinoa HOM05D007007 ORTHO05D008335 1.6e-22 110.9 132 48.5
ClCG08G010830 Citrullus lanatus HOM05D007007 ORTHO05D008335 1.6e-22 110.9 128 49.2
FvH4_5g38391 Fragaria vesca HOM05D007007 ORTHO05D008335 1.6e-22 110.9 132 49.2
MD08G1174100 Malus domestica HOM05D007007 ORTHO05D008335 1.6e-22 110.9 132 50.0
RcHm_v2.0_Chr7g0240411 Rosa chinensis HOM05D007007 ORTHO05D008335 2.7e-22 110.2 132 49.2
Sc26g0002350 Simmondsia chinensis HOM05D007007 ORTHO05D008335 3.6e-22 109.8 130 47.7
Ca_25771_v3 Cicer arietinum L. HOM05D007007 ORTHO05D008335 4.7e-22 109.4 132 47.7
HanXRQChr05g0162301 Helianthus annuus HOM05D007007 ORTHO05D008335 4.7e-22 109.4 132 47.0
arahy.Tifrunner.gnm1.ann1.PLAH4H Arachis hypogaea HOM05D007007 ORTHO05D008335 1.0e-21 108.2 132 47.7
EL10Ac1g01704 Beta vulgaris HOM05D007007 ORTHO05D008335 1.0e-21 108.2 132 46.2
CARHR071400 Cardamine hirsuta HOM05D007007 ORTHO05D008335 1.0e-21 108.2 125 52.0
Duzib041G0122 Durio zibethinus HOM05D007007 ORTHO05D008335 1.4e-21 107.8 124 50.8
Psat5g136560 Pisum sativum HOM05D007007 ORTHO05D008335 1.4e-21 107.8 132 47.7
Ciclev10002163m.g Citrus clementina HOM05D007007 ORTHO05D008335 1.8e-21 107.5 132 48.5
Phvul.009G026800 Phaseolus vulgaris HOM05D007007 ORTHO05D008335 1.8e-21 107.5 132 47.7
MD15G1360500 Malus domestica HOM05D007007 ORTHO05D008335 2.3e-21 107.1 130 49.2
Aqoxy6G00506 Aquilegia oxysepala HOM05D007007 ORTHO05D008335 3.0e-21 106.7 130 47.7
arahy.Tifrunner.gnm1.ann1.4WA5US Arachis hypogaea HOM05D000382 ORTHO05D008335 3.0e-21 106.7 132 47.0
HanXRQChr14g0427051 Helianthus annuus HOM05D007007 ORTHO05D008335 5.2e-21 105.9 131 45.8
Rhsim06G0087100 Rhododendron simsii HOM05D007007 ORTHO05D008335 5.2e-21 105.9 151 43.0
PSO541G0161 Papaver somniferum HOM05D007007 ORTHO05D008335 6.8e-21 105.5 132 46.2
VMungo1309G1520 Vigna mungo HOM05D007007 ORTHO05D008335 6.8e-21 105.5 132 47.0
Zm00001eb327980 Zea mays HOM05D007007 ORTHO05D008335 6.8e-21 105.5 132 47.0
Ah.05g168490 Amaranthus hybridus HOM05D007007 ORTHO05D008335 8.8e-21 105.1 130 46.2
MELO3C011379.2 Cucumis melo HOM05D007007 ORTHO05D008335 8.8e-21 105.1 128 48.4
Aqoxy5G00983 Aquilegia oxysepala HOM05D000003 ORTHO05D008335 1.2e-20 104.8 208 36.1
Prupe.1G508000 Prunus persica HOM05D007007 ORTHO05D008335 1.2e-20 104.8 132 47.0
Glyma.04G254700 Glycine max HOM05D007007 ORTHO05D008335 2.0e-20 104.0 130 47.7
Os07g0626400 Oryza sativa ssp. japonica HOM05D007007 ORTHO05D008335 2.0e-20 104.0 132 46.2
TPR.G32949 Trifolium pratense HOM05D007007 ORTHO05D008335 2.0e-20 104.0 130 46.2
TWI12G0615 Tripterygium wilfordii HOM05D007007 ORTHO05D008335 2.6e-20 103.6 126 50.0
PSO675G2451 Papaver somniferum HOM05D007007 ORTHO05D008335 4.4e-20 102.8 130 46.2
Lalb_Chr08g0241781 Lupinus albus HOM05D007007 ORTHO05D008335 7.5e-20 102.1 132 46.2
Medtr3g073560 Medicago truncatula HOM05D000382 ORTHO05D008335 1.7e-19 100.9 132 43.9
SEGI_37339 Sequoiadendron giganteum HOM05D007007 ORTHO05D008335 1.7e-19 100.9 132 46.2
TWI36G1549 Tripterygium wilfordii HOM05D007007 ORTHO05D008335 2.2e-19 100.5 121 49.6
CDE03G0075 Ceratophyllum demersum HOM05D007007 ORTHO05D008335 3.7e-19 99.8 126 46.0
vmacro21211 Vaccinium macrocarpon HOM05D007007 ORTHO05D008335 4.8e-19 99.4 170 38.2
Actinidia10285 Actinidia chinensis HOM05D007007 ORTHO05D008335 1.1e-18 98.2 127 47.2
CiPaw.06G023600 Carya illinoinensis HOM05D007007 ORTHO05D008335 1.4e-18 97.8 125 47.2
FAN13G0083 Fragaria x ananassa HOM05D000382 ORTHO05D008335 3.1e-18 96.7 122 47.5
Glyma.06G107400 Glycine max HOM05D007007 ORTHO05D008335 3.1e-18 96.7 142 42.3
Atru.chr13.1299 Acer truncatum HOM05D007007 ORTHO05D008335 9.1e-18 95.1 124 45.2
DCAR_009583 Daucus carota HOM05D007007 ORTHO05D008335 9.1e-18 95.1 117 47.9
CSS0030134 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 2.0e-17 94.0 77 64.9
ClCG08G002650 Citrullus lanatus HOM05D007007 ORTHO05D008335 2.0e-17 94.0 136 44.1
Mapoly0002s0118 Marchantia polymorpha HOM05D007007 ORTHO05D008335 2.7e-17 93.6 133 42.9
Dinv44721 Davidia involucrata HOM05D007007 ORTHO05D008335 6.5e-16 89.0 114 49.1
arahy.Tifrunner.gnm1.ann1.J1JBQA Arachis hypogaea HOM05D007007 ORTHO05D008335 4.2e-15 86.3 188 33.5
Eucgr.F03733 Eucalyptus grandis HOM05D007007 ORTHO05D008335 7.2e-15 85.5 63 69.8
Potri.002G090600 Populus trichocarpa HOM05D007007 ORTHO05D008335 2.1e-14 84.0 47 85.1
CiPaw.05G230900 Carya illinoinensis HOM05D007007 ORTHO05D008335 4.7e-14 82.8 63 68.3
Cfa015946 Carpinus fangiana HOM05D007007 ORTHO05D008335 1.0e-13 81.6 63 66.7
Manes.18G071800 Manihot esculenta HOM05D007007 ORTHO05D008335 1.0e-13 81.6 63 68.3
Actinidia15631 Actinidia chinensis HOM05D007007 ORTHO05D008335 1.4e-13 81.3 47 80.9
Haze_00544 Corylus avellana HOM05D007007 ORTHO05D008335 1.4e-13 81.3 47 80.9
Pp3c4_24430 Physcomitrium patens HOM05D007007 ORTHO05D008335 1.4e-13 81.3 126 38.9
QL12p035500 Quercus lobata HOM05D007007 ORTHO05D008335 1.4e-13 81.3 63 68.3
TAR628G0829 Trochodendron aralioides HOM05D000382 ORTHO05D000391 1.8e-13 80.9 63 68.3
SMO367G0886 Selaginella moellendorffii HOM05D007007 ORTHO05D008335 4.0e-13 79.7 132 39.4
CANSAT01G1447 Cannabis sativa HOM05D007007 ORTHO05D008335 8.8e-13 78.6 63 65.1
Hund26658 Selenicereus undatus HOM05D007007 ORTHO05D008335 8.8e-13 78.6 63 63.5
Hma1.2p1_1060F.1_g253190 Hydrangea macrophylla HOM05D007007 ORTHO05D008335 4.9e-11 72.8 63 61.9
AagrBONN_evm.TU.Sc2ySwM_344.1161 Anthoceros agrestis HOM05D007007 ORTHO05D008335 7.0e-10 68.9 61 55.7
Zm00001eb225930 Zea mays HOM05D007007 ORTHO05D008335 8.6e-08 62.0 59 55.9
Zm00001eb414200 Zea mays HOM05D007007 ORTHO05D008335 1.5e-07 61.2 58 56.9


User provided reference genes

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