Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009184 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D013255 5.2e-53 210.7 100 100.0
CSS0000086 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D013255 6.4e-51 203.8 100 97.0
CSS0025386 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.5e-36 156.0 152 56.6
CSS0000612 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D013255 4.2e-34 147.9 96 79.2
CSS0037480 Camellia sinensis var. sinensis HOM05D011226 ORTHO05D014017 3.2e-26 121.7 93 66.7
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 1.2e-20 103.2 148 40.5
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.3e-19 99.8 147 40.8
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 2.9e-19 98.6 147 40.1
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 3.2e-18 95.1 147 38.1
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 3.2e-18 95.1 149 39.6
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 1.2e-17 93.2 148 39.9
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.6e-17 92.8 142 38.7
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 2.7e-17 92.0 146 38.4
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 4.6e-17 91.3 147 36.7
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 6.0e-17 90.9 142 38.0
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 1.3e-16 89.7 146 37.7
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 1.8e-16 89.4 146 37.0
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 2.3e-16 89.0 150 38.0
ATR0681G310 Amborella trichopoda HOM05D002560 ORTHO05D003782 2.3e-16 89.0 147 37.4
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 2.3e-16 89.0 145 36.6
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 2.3e-16 89.0 145 36.6
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 3.0e-16 88.6 146 37.0
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 3.0e-16 88.6 147 38.1
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 3.9e-16 88.2 144 36.8
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 3.9e-16 88.2 147 36.1
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 3.9e-16 88.2 146 37.0
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 3.9e-16 88.2 146 37.0
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 5.1e-16 87.8 147 37.4
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 6.7e-16 87.4 147 36.1
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 6.7e-16 87.4 143 37.1
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 6.7e-16 87.4 143 37.1
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 6.7e-16 87.4 147 36.1
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 6.7e-16 87.4 147 36.1
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 8.7e-16 87.0 143 37.1
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 1.1e-15 86.7 147 36.7
Nitab4.5_0000355g0160 Nicotiana tabacum HOM05D002560 ORTHO05D003782 1.1e-15 86.7 147 35.4
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 1.1e-15 86.7 143 36.4
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 1.5e-15 86.3 144 36.8
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 1.5e-15 86.3 153 36.6
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 1.5e-15 86.3 140 36.4
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 1.5e-15 86.3 147 34.7
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 1.5e-15 86.3 147 34.7
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.9e-15 85.9 143 36.4
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.9e-15 85.9 144 36.8
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 1.9e-15 85.9 146 35.6
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 1.9e-15 85.9 146 35.6
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 2.5e-15 85.5 142 36.6
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 2.5e-15 85.5 142 36.6
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 2.5e-15 85.5 147 36.1
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 2.5e-15 85.5 146 37.0
Nitab4.5_0002009g0040 Nicotiana tabacum HOM05D002560 ORTHO05D003782 2.5e-15 85.5 147 35.4
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 2.5e-15 85.5 147 36.7
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 2.5e-15 85.5 146 35.6
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 2.5e-15 85.5 146 36.3
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 3.3e-15 85.1 146 36.3
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 3.3e-15 85.1 140 35.7
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 3.3e-15 85.1 145 35.9
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 4.3e-15 84.7 146 36.3
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 4.3e-15 84.7 146 35.6
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 4.3e-15 84.7 146 34.9
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 5.6e-15 84.3 145 35.9
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 5.6e-15 84.3 141 35.5
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 5.6e-15 84.3 141 35.5
Dinv25295 Davidia involucrata HOM05D002560 ORTHO05D003782 5.6e-15 84.3 147 34.7
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 5.6e-15 84.3 146 34.9
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 5.6e-15 84.3 149 34.9
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 5.6e-15 84.3 146 36.3
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 5.6e-15 84.3 145 35.9
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 5.6e-15 84.3 144 36.8
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 7.4e-15 84.0 49 77.6
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 7.4e-15 84.0 150 34.7
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 7.4e-15 84.0 145 35.2
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 7.4e-15 84.0 145 35.2
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 7.4e-15 84.0 144 35.4
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 9.6e-15 83.6 144 35.4
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 9.6e-15 83.6 147 34.7
SGA_v2.0_scaffold373G50169 Striga asiatica HOM05D002560 ORTHO05D003782 9.6e-15 83.6 147 36.1
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 9.6e-15 83.6 147 36.1
VMungo1383G2495 Vigna mungo HOM05D002560 ORTHO05D003782 9.6e-15 83.6 146 35.6
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 9.6e-15 83.6 146 36.3
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 1.3e-14 83.2 154 34.4
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 1.3e-14 83.2 149 34.2
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 1.6e-14 82.8 149 33.6
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 2.1e-14 82.4 146 35.6
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 2.1e-14 82.4 147 34.7
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 2.1e-14 82.4 145 34.5
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 2.8e-14 82.0 147 36.1
Atru.chr8.2364 Acer truncatum HOM05D002560 ORTHO05D003782 4.8e-14 81.3 146 33.6
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 4.8e-14 81.3 147 34.7
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 6.2e-14 80.9 146 36.3
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 6.2e-14 80.9 146 36.3
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 6.2e-14 80.9 146 36.3
SEGI_27011 Sequoiadendron giganteum HOM05D002560 ORTHO05D003782 6.2e-14 80.9 149 34.2
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 8.1e-14 80.5 158 32.3
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 8.1e-14 80.5 147 34.7
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 8.1e-14 80.5 55 67.3
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 1.1e-13 80.1 146 34.2
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.1e-13 80.1 146 33.6
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.1e-13 80.1 147 35.4
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.1e-13 80.1 147 35.4
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 1.1e-13 80.1 146 34.9
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 1.1e-13 80.1 146 33.6
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.1e-13 80.1 146 33.6
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 1.1e-13 80.1 140 35.7
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 1.4e-13 79.7 55 67.3
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.4e-13 79.7 143 35.0
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.4e-13 79.7 146 33.6
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 1.8e-13 79.3 146 34.2
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 1.8e-13 79.3 68 57.4
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 1.8e-13 79.3 49 77.6
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 1.8e-13 79.3 146 34.9
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 2.4e-13 79.0 146 32.9
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 2.4e-13 79.0 146 32.9
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 2.4e-13 79.0 49 75.5
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 2.4e-13 79.0 146 34.2
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 3.1e-13 78.6 146 34.2
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 3.1e-13 78.6 143 35.7
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 3.1e-13 78.6 146 32.9
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 3.1e-13 78.6 147 34.0
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 3.1e-13 78.6 146 33.6
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 4.0e-13 78.2 143 34.3
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 5.3e-13 77.8 146 32.9
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 32.9
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 32.9
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 32.9
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 32.9
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 6.9e-13 77.4 49 73.5
Haze_21119 Corylus avellana HOM05D002560 ORTHO05D003782 6.9e-13 77.4 46 73.9
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 6.9e-13 77.4 153 32.7
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 32.9
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 6.9e-13 77.4 53 67.9
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 6.9e-13 77.4 146 32.9
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 6.9e-13 77.4 54 72.2
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 9.0e-13 77.0 51 66.7
Solyc10g076260.2 Solanum lycopersicum HOM05D002560 ORTHO05D003782 9.0e-13 77.0 146 33.6
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 1.2e-12 76.6 55 69.1
Gohir.A06G201901 Gossypium hirsutum HOM05D002560 ORTHO05D003782 1.2e-12 76.6 57 63.2
Lalb_Chr01g0023601 Lupinus albus HOM05D002560 ORTHO05D003782 1.2e-12 76.6 45 75.6
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.5e-12 76.3 55 67.3
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.5e-12 76.3 55 67.3
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 1.5e-12 76.3 146 32.2
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 1.5e-12 76.3 146 32.2
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 1.5e-12 76.3 146 32.2
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 1.5e-12 76.3 146 32.2
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 1.5e-12 76.3 146 32.2
CBR_g54867 Chara braunii HOM05D002560 ORTHO05D003782 1.5e-12 76.3 50 68.0
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.5e-12 76.3 52 69.2
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 2.0e-12 75.9 146 32.9
CAN.G84.41 Capsicum annuum HOM05D002560 ORTHO05D000293 2.6e-12 75.5 56 62.5
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 2.6e-12 75.5 143 32.9
Lj2C63G9 Lonicera japonica HOM05D002560 ORTHO05D003782 2.6e-12 75.5 44 77.3
Ah.15g090290 Amaranthus hybridus HOM05D002560 ORTHO05D003782 3.4e-12 75.1 45 73.3
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 3.4e-12 75.1 146 31.5
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 3.4e-12 75.1 146 31.5
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 3.4e-12 75.1 146 31.5
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 3.4e-12 75.1 146 31.5
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 7.6e-12 73.9 55 61.8
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 7.6e-12 73.9 67 52.2
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 7.6e-12 73.9 68 54.4
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 7.6e-12 73.9 44 75.0
Lsat_1_v5_gn_7_100020 Lactuca sativa HOM05D002560 ORTHO05D013255 1.0e-11 73.6 84 46.4
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 1.3e-11 73.2 46 69.6
Eucgr.K01257 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.7e-11 72.8 46 67.4
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.2e-11 72.4 48 66.7
AT5G01770 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 2.9e-11 72.0 48 64.6
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.9e-11 72.0 51 64.7
Gohir.A05G397550 Gossypium hirsutum HOM05D002560 ORTHO05D003782 4.9e-11 71.2 56 62.5
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 1.1e-10 70.1 43 72.1
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 4.2e-10 68.2 160 31.2
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 4.2e-10 68.2 140 31.4
Lsat_1_v5_gn_2_30201 Lactuca sativa HOM05D002560 ORTHO05D013255 5.5e-10 67.8 92 42.4
COL.COLO4_08634 Corchorus olitorius HOM05D002560 ORTHO05D003782 4.6e-09 64.7 92 41.3
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 7.9e-09 63.9 149 30.2
Haze_26280 Corylus avellana HOM05D002560 ORTHO05D003782 1.3e-08 63.2 143 30.1
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 3.0e-08 62.0 148 29.7
Lsat_1_v5_gn_7_54181 Lactuca sativa HOM05D002560 ORTHO05D003085 1.5e-07 59.7 51 60.8
Cre08.g371957 Chlamydomonas reinhardtii HOM05D002560 ORTHO05D003782 4.3e-07 58.2 48 54.2
Cfa024140 Carpinus fangiana HOM05D002560 ORTHO05D003782 5.7e-07 57.8 49 49.0


User provided reference genes

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