Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009154 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 8.3e-35 149.8 76 100.0
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 2.6e-28 128.3 68 92.6
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 5.8e-28 127.1 68 91.2
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 5.8e-28 127.1 67 94.0
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 7.5e-28 126.7 68 92.6
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 1.3e-27 125.9 68 92.6
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 2.2e-27 125.2 68 89.7
Lj6C654G1 Lonicera japonica HOM05D004338 ORTHO05D005205 2.9e-27 124.8 68 89.7
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 4.9e-27 124.0 68 92.6
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 8.3e-27 123.2 68 89.7
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 8.3e-27 123.2 68 88.2
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 1.1e-26 122.9 68 88.2
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 1.4e-26 122.5 68 88.2
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 1.4e-26 122.5 68 88.2
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 1.4e-26 122.5 68 88.2
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 1.9e-26 122.1 68 88.2
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 2.4e-26 121.7 68 88.2
Oeu003600.1 Olea europaea HOM05D004338 ORTHO05D005205 2.4e-26 121.7 68 88.2
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 3.2e-26 121.3 68 88.2
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 5.4e-26 120.6 68 88.2
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 7.0e-26 120.2 68 86.8
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 9.2e-26 119.8 68 85.3
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 9.2e-26 119.8 68 88.2
FAN02G4304 Fragaria x ananassa HOM05D004338 ORTHO05D005205 1.2e-25 119.4 68 88.2
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 1.2e-25 119.4 68 88.2
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 1.6e-25 119.0 68 88.2
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 1.6e-25 119.0 68 83.8
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.6e-25 119.0 68 86.8
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 1.6e-25 119.0 68 86.8
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 1.6e-25 119.0 68 85.3
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 1.6e-25 119.0 68 85.3
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 2.0e-25 118.6 68 85.3
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 2.0e-25 118.6 68 86.8
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 2.0e-25 118.6 68 86.8
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 2.7e-25 118.2 68 86.8
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 2.7e-25 118.2 68 86.8
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 3.5e-25 117.9 68 85.3
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 3.5e-25 117.9 68 85.3
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 3.5e-25 117.9 68 86.8
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 4.6e-25 117.5 68 83.8
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 6.0e-25 117.1 68 85.3
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 6.0e-25 117.1 68 85.3
RcHm_v2.0_Chr4g0389581 Rosa chinensis HOM05D004338 ORTHO05D005205 6.0e-25 117.1 68 85.3
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 7.8e-25 116.7 68 85.3
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 7.8e-25 116.7 68 83.8
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 1.0e-24 116.3 68 85.3
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 1.3e-24 115.9 68 83.8
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 1.7e-24 115.5 64 89.1
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 1.7e-24 115.5 68 85.3
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 1.7e-24 115.5 68 86.8
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 2.3e-24 115.2 68 88.2
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 2.3e-24 115.2 70 82.9
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 3.0e-24 114.8 68 86.8
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 3.9e-24 114.4 65 90.8
Nn1g02554 Nelumbo nucifera HOM05D004338 ORTHO05D005205 3.9e-24 114.4 67 86.6
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 3.9e-24 114.4 68 85.3
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 5.0e-24 114.0 68 80.9
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 6.6e-24 113.6 67 80.6
BcaB08g35592 Brassica carinata HOM05D004338 ORTHO05D005205 6.6e-24 113.6 67 80.6
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 6.6e-24 113.6 68 80.9
MBI04_g06839_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 6.6e-24 113.6 69 84.1
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 8.6e-24 113.2 67 80.6
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 8.6e-24 113.2 67 80.6
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 8.6e-24 113.2 67 80.6
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 8.6e-24 113.2 67 80.6
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 8.6e-24 113.2 67 80.6
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 1.1e-23 112.8 66 86.4
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 1.1e-23 112.8 68 83.8
Sabra08G0122600 Salix brachista HOM05D004338 ORTHO05D005205 1.1e-23 112.8 66 86.4
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 1.1e-23 112.8 67 85.1
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.5e-23 112.5 67 80.6
AL8G16520 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.5e-23 112.5 67 80.6
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 1.9e-23 112.1 68 79.4
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 1.9e-23 112.1 68 82.4
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 3.3e-23 111.3 67 79.1
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 3.3e-23 111.3 68 83.8
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 4.3e-23 110.9 67 79.1
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 4.3e-23 110.9 68 79.4
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 4.3e-23 110.9 68 82.4
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 5.6e-23 110.5 68 83.8
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 5.6e-23 110.5 68 82.4
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 7.3e-23 110.2 67 80.6
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 7.3e-23 110.2 67 80.6
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 7.3e-23 110.2 67 80.6
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 7.3e-23 110.2 67 80.6
DCAR_000306 Daucus carota HOM05D004338 ORTHO05D005205 7.3e-23 110.2 68 79.4
DCAR_024200 Daucus carota HOM05D004338 ORTHO05D005205 7.3e-23 110.2 68 79.4
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 7.3e-23 110.2 66 84.8
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 7.3e-23 110.2 68 80.9
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 9.5e-23 109.8 69 79.7
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 9.5e-23 109.8 62 88.7
AL8G16540 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.2e-22 109.4 67 79.1
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 1.2e-22 109.4 67 80.6
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 1.2e-22 109.4 68 79.4
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 1.2e-22 109.4 67 79.1
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 1.6e-22 109.0 67 79.1
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 1.6e-22 109.0 66 84.8
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 2.1e-22 108.6 67 80.6
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 3.6e-22 107.8 67 77.6
CDE03G0382 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 3.6e-22 107.8 70 80.0
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 3.6e-22 107.8 69 78.3
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 4.7e-22 107.5 68 80.9
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 6.2e-22 107.1 67 77.6
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 8.1e-22 106.7 68 77.9
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 8.1e-22 106.7 68 77.9
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.1e-21 106.3 68 76.5
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 3.1e-21 104.8 62 79.0
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 4.0e-21 104.4 68 76.5
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 1.2e-20 102.8 68 76.5
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 2.9e-19 98.2 59 83.1
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 4.9e-19 97.4 59 79.7
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 4.9e-19 97.4 59 79.7
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 3.2e-18 94.7 59 76.3
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 2.1e-17 92.0 68 67.6
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 1.7e-16 89.0 62 74.2
CARHR179760 Cardamine hirsuta HOM05D004338 ORTHO05D005205 5.6e-15 84.0 56 71.4
unitig_748.g7312 Utricularia gibba HOM05D004338 ORTHO05D005205 4.4e-12 74.3 62 64.5
Pp3c17_14700 Physcomitrium patens HOM05D004338 ORTHO05D005205 9.9e-12 73.2 62 62.9
SMO340G0070 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 6.4e-11 70.5 62 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2350 Anthoceros agrestis HOM05D004338 ORTHO05D005205 1.4e-10 69.3 62 54.8
SMO174G0094 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 7.1e-10 67.0 60 58.3
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 1.0e-08 63.2 37 78.4
SEGI_13030 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 1.7e-08 62.4 51 64.7
Hund07295 Selenicereus undatus HOM05D004338 ORTHO05D005205 3.3e-07 58.2 35 77.1


User provided reference genes

Program Settings