Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 2627.8 1331 100.0
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 2614.0 1328 99.6
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1804.6 1326 71.6
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1782.7 1322 71.0
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1639.4 1253 70.3
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1636.3 1479 61.3
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1630.9 1311 67.2
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1498.4 1341 61.4
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1411.0 1342 58.7
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1409.8 1351 57.4
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1402.9 1192 64.4
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1387.5 1348 58.3
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1384.4 1324 57.6
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1381.3 1326 58.1
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1364.0 1355 56.2
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1359.0 1351 57.2
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1341.3 1342 56.6
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1337.4 1331 55.2
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1333.5 1330 55.6
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1327.8 1325 55.6
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1316.6 1351 54.6
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1308.5 1345 53.7
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1307.0 1352 55.1
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1301.2 1351 54.2
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1298.1 1354 53.2
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1295.8 1346 53.2
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1283.1 1338 53.8
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1280.4 1359 52.8
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1256.1 1324 53.7
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1251.9 1359 52.6
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1248.0 1319 53.9
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1209.5 1275 54.9
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1208.7 1334 52.9
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1202.6 1364 51.8
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1195.6 1357 51.9
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1190.3 1355 50.2
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1184.5 1341 50.0
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 0.0e+00 1182.5 1341 50.4
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1181.0 1359 51.1
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1180.6 1358 51.4
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1179.9 1341 49.9
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1178.7 1358 51.4
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 0.0e+00 1172.5 1334 49.7
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1171.0 1260 53.2
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 0.0e+00 1167.9 1351 49.6
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 0.0e+00 1166.4 1296 50.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1156.0 1238 52.3
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 0.0e+00 1145.2 1350 48.9
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1114.8 1282 50.4
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 0.0e+00 1114.4 1318 49.3
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 0.0e+00 1092.8 1355 47.5
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 1.8e-311 1073.2 1335 47.4
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 5.5e-307 1058.1 1331 48.4
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 1.8e-305 1053.1 1337 47.5
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 3.7e-303 1045.4 1332 47.1
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.4e-302 1042.7 1320 47.7
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 2.5e-299 1032.7 1317 47.4
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 9.3e-299 1030.8 1320 46.1
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 3.5e-298 1028.9 1348 45.8
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 8.7e-297 1024.2 1307 47.4
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 2.5e-296 1022.7 1307 47.1
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.0e-293 1013.1 1317 46.9
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 1.7e-292 1010.0 1318 46.6
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 6.5e-292 1008.1 1191 48.4
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 7.2e-291 1004.6 1380 44.4
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 4.6e-290 1001.9 1323 46.0
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 2.4e-286 989.6 1324 46.1
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 2.7e-282 976.1 1318 45.1
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 4.7e-282 975.3 1322 45.8
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.7e-279 966.8 1321 45.7
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 6.7e-273 944.9 1342 43.3
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 4.8e-271 938.7 1347 43.5
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 1.2e-253 880.9 1312 42.5
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 2.9e-252 876.3 1303 42.4
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 3.4e-248 862.8 1355 42.0
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.6e-245 854.0 1346 40.9
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 4.5e-245 852.4 1332 41.9
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 9.5e-235 818.1 697 65.3
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 7.3e-227 792.0 1299 40.6
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.6e-218 764.2 1351 39.7
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.1e-218 763.8 1146 41.6
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 4.7e-218 762.7 1344 38.6
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.7e-215 754.2 1274 38.9
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.0e-212 743.4 714 59.0
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 3.3e-211 740.0 1304 40.0
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 9.0e-209 731.9 1090 42.5
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.3e-207 728.0 693 59.3
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 6.6e-204 715.7 645 58.6
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.1e-198 698.4 1301 36.5
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 3.3e-195 686.8 1133 38.7
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 7.6e-192 675.6 1241 38.2
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 2.0e-184 651.0 1329 35.1
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 5.8e-184 649.4 1125 37.9
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 8.4e-183 645.6 707 52.6
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.9e-182 644.4 1272 35.0
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 5.5e-174 616.3 569 57.8
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 3.6e-149 533.9 721 46.9
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 1.6e-144 518.5 616 49.0
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 2.2e-143 514.6 682 48.8
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.7e-133 480.3 789 39.7
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.3e-130 472.2 718 43.9
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 2.8e-130 471.1 1348 32.4
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 3.5e-128 464.2 800 39.1
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 5.9e-128 463.4 784 37.0
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 4.6e-104 384.0 697 38.3
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 3.9e-95 354.4 372 52.4
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.3e-93 349.4 818 30.7
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.4e-89 335.9 797 31.4
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 7.4e-78 297.0 883 30.8
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.2e-74 285.4 589 32.3
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.5e-59 236.1 792 25.4
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.8e-45 188.0 292 40.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 4.2e-41 174.9 271 41.3
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 9.4e-41 173.7 605 32.4
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 5.7e-38 164.5 262 36.3
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 4.8e-37 161.4 117 70.9
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 2.4e-36 159.1 576 29.9
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 4.4e-30 138.3 267 34.5
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 2.7e-27 129.0 495 26.7
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.7e-21 108.6 275 34.9
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.7e-21 108.6 275 34.9
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.1e-20 107.1 588 25.9
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 9.2e-20 104.0 376 25.0
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 3.5e-19 102.1 142 39.4
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 2.3e-18 99.4 580 26.9
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 2.3e-18 99.4 580 26.9
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 2.3e-18 99.4 516 27.1
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 2.8e-16 92.4 580 26.7
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 3.6e-16 92.0 252 31.3
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 4.7e-16 91.7 614 25.6
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 8.9e-15 87.4 564 25.7
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 1.2e-14 87.0 202 39.1
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 2.0e-14 86.3 550 25.8
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 2.0e-14 86.3 550 25.8
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 3.4e-14 85.5 186 32.8
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 2.0e-11 76.3 583 25.4
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.0e-11 76.3 135 36.3
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 3.5e-11 75.5 459 23.3
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 1.2e-08 67.0 299 20.4
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 4.0e-07 62.0 80 43.8
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.2e-06 60.5 101 39.6
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.6e-06 59.3 90 36.7
Nn6g33590 Nelumbo nucifera HOM05D052452 ORTHO05D006357 9.8e-06 57.4 115 40.9


User provided reference genes

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