Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009135 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 2.3e-156 555.4 269 100.0
CSS0035487 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 2.7e-136 488.8 251 96.4
CSS0050200 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.6e-125 453.0 257 88.3
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 6.2e-85 318.2 239 66.9
Dinv33275 Davidia involucrata HOM05D004735 ORTHO05D005243 1.2e-80 303.9 238 64.7
vmacro18383 Vaccinium macrocarpon HOM05D004735 ORTHO05D005243 2.7e-80 302.8 254 63.0
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 1.1e-76 290.8 239 62.3
Actinidia19551 Actinidia chinensis HOM05D004735 ORTHO05D005243 4.5e-75 285.4 210 67.1
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 7.6e-75 284.6 239 62.8
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 1.5e-70 270.4 239 56.5
GSVIVG01032979001 Vitis vinifera HOM05D004735 ORTHO05D005243 2.8e-69 266.2 237 57.8
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 4.8e-69 265.4 254 55.5
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 4.2e-65 252.3 241 52.3
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 1.2e-64 250.8 241 51.5
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 7.9e-64 248.1 244 54.5
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 2.0e-62 243.4 246 51.2
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 2.6e-62 243.0 244 53.7
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 4.4e-62 242.3 241 51.9
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 5.7e-62 241.9 246 51.6
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 7.4e-62 241.5 241 53.5
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 1.3e-61 240.7 241 52.3
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 1.3e-61 240.7 241 52.7
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 2.2e-61 240.0 241 51.9
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 4.8e-61 238.8 241 52.3
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 4.8e-61 238.8 241 50.6
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 6.3e-61 238.4 240 50.8
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 8.2e-61 238.0 242 52.5
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.8e-60 236.9 241 51.9
Peaxi162Scf00420g00843 Petunia axillaris HOM05D004735 ORTHO05D005243 1.8e-60 236.9 257 48.2
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 5.3e-60 235.3 241 51.0
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 5.3e-60 235.3 246 48.8
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 6.9e-60 235.0 241 50.2
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 2.6e-59 233.0 241 50.6
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 3.4e-59 232.6 241 50.2
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 5.9e-59 231.9 246 48.4
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 7.7e-59 231.5 241 49.0
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.0e-58 231.1 241 49.8
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 1.3e-58 230.7 241 51.0
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.7e-58 230.3 246 48.0
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 2.2e-58 229.9 241 49.4
Migut.F00010 Erythranthe guttata HOM05D004735 ORTHO05D005243 2.2e-58 229.9 240 49.6
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 2.2e-58 229.9 241 50.2
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 2.9e-58 229.6 253 50.6
Gohir.A11G063866 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.8e-58 229.2 241 50.6
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 5.0e-58 228.8 241 51.5
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 5.0e-58 228.8 242 52.1
Lalb_Chr21g0316971 Lupinus albus HOM05D004735 ORTHO05D005243 1.4e-57 227.3 241 46.9
Lalb_Chr22g0359841 Lupinus albus HOM05D004735 ORTHO05D005243 2.5e-57 226.5 241 49.4
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 3.2e-57 226.1 246 47.6
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 3.2e-57 226.1 240 49.6
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 5.5e-57 225.3 246 47.2
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 9.4e-57 224.6 241 47.3
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 9.4e-57 224.6 241 47.3
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 1.2e-56 224.2 241 49.8
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 4.7e-56 222.2 237 48.9
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 4.7e-56 222.2 241 49.4
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 1.0e-55 221.1 239 48.1
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.4e-55 220.7 243 51.0
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 1.4e-55 220.7 254 49.2
Lsat_1_v5_gn_3_104900 Lactuca sativa HOM05D004735 ORTHO05D005243 1.8e-55 220.3 242 47.5
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.8e-55 220.3 243 51.0
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 2.3e-55 219.9 243 46.1
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 5.2e-55 218.8 238 49.6
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 6.7e-55 218.4 242 47.9
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 8.8e-55 218.0 242 47.9
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 4.4e-54 215.7 241 48.1
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 9.7e-54 214.5 245 47.8
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 9.7e-54 214.5 242 47.1
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.3e-53 214.2 243 44.9
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 1.7e-53 213.8 241 49.0
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 8.2e-53 211.5 242 46.7
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 1.4e-52 210.7 244 45.5
CDE06G2773 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 2.4e-52 209.9 266 45.1
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 4.1e-52 209.1 240 45.0
Solyc02g094530.1 Solanum lycopersicum HOM05D004735 ORTHO05D005243 5.3e-52 208.8 254 44.1
Sopen02g039210 Solanum pennellii HOM05D004735 ORTHO05D005243 5.3e-52 208.8 245 44.9
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 9.1e-52 208.0 256 45.3
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 1.2e-51 207.6 240 45.0
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 1.6e-51 207.2 241 46.1
SGA_v2.0_scaffold423G51443 Striga asiatica HOM05D004735 ORTHO05D005243 2.6e-51 206.5 240 45.8
MSTRG.24121 Avicennia marina HOM05D004735 ORTHO05D005243 3.5e-51 206.1 231 49.4
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 3.5e-51 206.1 241 45.2
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 1.0e-50 204.5 240 44.6
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 1.7e-50 203.8 241 44.8
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 1.7e-50 203.8 241 46.9
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 2.2e-50 203.4 242 46.7
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 2.9e-50 203.0 240 44.6
Oeu035273.1 Olea europaea HOM05D004735 ORTHO05D005243 3.8e-50 202.6 244 45.9
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 5.0e-50 202.2 240 44.2
HanXRQChr17g0550891 Helianthus annuus HOM05D004735 ORTHO05D005243 5.0e-50 202.2 234 46.2
PGR042G1405 Punica granatum HOM05D004735 ORTHO05D005243 1.9e-49 200.3 241 46.5
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 2.5e-49 199.9 244 44.7
ECA246G4565 Erigeron canadensis HOM05D004735 ORTHO05D005243 4.2e-49 199.1 237 44.7
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 4.2e-49 199.1 246 44.3
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 5.5e-49 198.7 240 42.9
Ah.13g074210 Amaranthus hybridus HOM05D004735 ORTHO05D005243 7.2e-49 198.4 236 45.8
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 4.7e-48 195.7 244 43.4
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 6.1e-48 195.3 240 43.8
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 6.1e-48 195.3 240 43.8
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 1.8e-47 193.7 238 45.4
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 4.0e-47 192.6 246 42.7
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 4.0e-47 192.6 241 40.7
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 5.2e-47 192.2 244 45.1
MBI07_g13942_MAGBIO Magnolia biondii HOM05D004735 ORTHO05D005243 5.2e-47 192.2 262 45.4
PSO017G6705 Papaver somniferum HOM05D004735 ORTHO05D005243 6.7e-47 191.8 242 43.0
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 8.8e-47 191.4 240 43.3
PSO478G1205 Papaver somniferum HOM05D004735 ORTHO05D005243 1.2e-46 191.0 242 43.0
HanXRQChr15g0475721 Helianthus annuus HOM05D004735 ORTHO05D005243 5.7e-46 188.7 230 44.3
ATR0582G141 Amborella trichopoda HOM05D004735 ORTHO05D005243 9.7e-46 188.0 242 42.6
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 4.8e-45 185.7 243 43.2
Cc07_g01340 Coffea canephora HOM05D004735 ORTHO05D005243 7.0e-44 181.8 158 60.1
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 2.7e-43 179.9 178 51.7
Lj7A617T73 Lonicera japonica HOM05D004735 ORTHO05D005243 5.9e-43 178.7 153 60.8
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 1.0e-42 177.9 241 43.2
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 2.5e-41 173.3 269 38.3
Ah.07g203970 Amaranthus hybridus HOM05D004735 ORTHO05D005243 1.6e-40 170.6 242 41.3
TAR371G0169 Trochodendron aralioides HOM05D004735 ORTHO05D008917 1.6e-40 170.6 157 54.1
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 3.6e-40 169.5 231 43.3
SEGI_21903 Sequoiadendron giganteum HOM05D004735 ORTHO05D005243 2.3e-39 166.8 245 39.2
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 4.1e-36 156.0 241 41.1
Zm00001eb307010 Zea mays HOM05D004735 ORTHO05D005243 7.0e-36 155.2 230 37.0
DCAR_014465 Daucus carota HOM05D004735 ORTHO05D005243 1.5e-30 137.5 236 36.9
SHI13678 Sapria himalayana HOM05D004735 ORTHO05D005243 3.8e-26 122.9 152 43.4
Gohir.A11G063833 Gossypium hirsutum HOM05D004735 ORTHO05D005243 7.3e-25 118.6 121 47.1
CDE02G4423 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 8.0e-24 115.2 122 48.4
CBR_g32498 Chara braunii HOM05D004735 ORTHO05D005243 8.3e-21 105.1 162 34.6
unitig_0.g1642 Utricularia gibba HOM05D004735 ORTHO05D005243 7.8e-19 98.6 124 47.6
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 6.2e-16 89.0 67 58.2
Cc07_g01350 Coffea canephora HOM05D004735 ORTHO05D005243 5.2e-15 85.9 67 52.2
SMO112G0099 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 6.6e-10 68.9 108 32.4
SMO364G0040 Selaginella moellendorffii HOM05D004735 ORTHO05D005243 8.6e-10 68.6 112 32.1
CDE02G2610 Ceratophyllum demersum HOM05D004735 ORTHO05D005243 1.9e-09 67.4 70 44.3
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 2.5e-09 67.0 164 29.9
A02p02280 Brassica napus HOM05D004735 ORTHO05D005243 5.6e-09 65.9 51 52.9
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 5.6e-09 65.9 147 29.9
unitig_736.g22426 Utricularia gibba HOM05D002855 ORTHO05D004406 5.6e-09 65.9 153 30.1
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 1.6e-08 64.3 172 30.2
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 2.1e-08 63.9 156 30.1
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 2.1e-08 63.9 143 32.2
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 2.1e-08 63.9 154 28.6
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 3.6e-08 63.2 164 29.3
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 3.6e-08 63.2 143 32.9
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 6.2e-08 62.4 143 31.5
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 8.1e-08 62.0 165 29.7
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 1.4e-07 61.2 143 30.8
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.4e-07 61.2 143 30.8
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 1.8e-07 60.8 146 29.5
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 1.8e-07 60.8 143 31.5
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 1.8e-07 60.8 167 29.3
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 1.8e-07 60.8 173 30.6
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 3.1e-07 60.1 143 30.1
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 3.1e-07 60.1 143 31.5
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 4.0e-07 59.7 143 30.1
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 4.0e-07 59.7 148 27.7
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 8.9e-07 58.5 176 27.3
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 8.9e-07 58.5 143 30.8
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 8.9e-07 58.5 146 29.5
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 1.2e-06 58.2 143 31.5
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 1.2e-06 58.2 164 29.3
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 1.5e-06 57.8 167 28.7
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.0e-06 57.4 154 27.9
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 2.0e-06 57.4 164 29.3
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 2.6e-06 57.0 178 26.4
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 2.6e-06 57.0 143 28.7
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 2.6e-06 57.0 143 30.1
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 3.4e-06 56.6 146 30.8
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 3.4e-06 56.6 173 28.3
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 3.4e-06 56.6 143 29.4
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 5.8e-06 55.8 146 30.1
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 5.8e-06 55.8 173 26.6
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 7.5e-06 55.5 146 30.1
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 7.5e-06 55.5 164 27.4
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 7.5e-06 55.5 142 28.9
A06p21220 Brassica napus HOM05D002855 ORTHO05D004406 9.9e-06 55.1 146 30.1
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 9.9e-06 55.1 143 29.4


User provided reference genes

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