Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009115 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 1.9e-71 272.3 129 100.0
CSS0019543 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 1.5e-57 226.1 137 80.3
CSS0026439 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 1.0e-56 223.4 137 79.6
Actinidia06678 Actinidia chinensis HOM05D005886 ORTHO05D007512 1.7e-56 222.6 137 78.1
Hma1.2p1_0098F.1_g048230 Hydrangea macrophylla HOM05D005886 ORTHO05D007512 6.1e-54 214.2 137 75.2
Dinv04428 Davidia involucrata HOM05D005886 ORTHO05D007512 3.9e-53 211.5 137 75.2
Dinv03810 Davidia involucrata HOM05D005886 ORTHO05D007512 6.7e-53 210.7 136 75.0
CiPaw.13G045200 Carya illinoinensis HOM05D005886 ORTHO05D007512 1.1e-52 209.9 134 72.4
Oeu025604.1 Olea europaea HOM05D005886 ORTHO05D007512 1.5e-52 209.5 134 73.1
Peaxi162Scf00120g00720 Petunia axillaris HOM05D005886 ORTHO05D007512 1.5e-52 209.5 134 74.6
Nitab4.5_0011494g0010 Nicotiana tabacum HOM05D005886 ORTHO05D007512 2.0e-52 209.1 134 73.9
PGSC0003DMG400000991 Solanum tuberosum HOM05D005886 ORTHO05D007512 5.7e-52 207.6 134 73.9
Solyc11g006400.2 Solanum lycopersicum HOM05D005886 ORTHO05D007512 7.4e-52 207.2 134 73.1
Sopen11g002300 Solanum pennellii HOM05D005886 ORTHO05D007512 1.3e-51 206.5 134 73.1
Nitab4.5_0001781g0100 Nicotiana tabacum HOM05D005886 ORTHO05D007512 1.7e-51 206.1 134 73.1
Eucgr.G02665 Eucalyptus grandis HOM05D005886 ORTHO05D007512 3.7e-51 204.9 136 69.9
Duzib205G1746 Durio zibethinus HOM05D005886 ORTHO05D007512 1.4e-50 203.0 135 71.1
Sc09g0004780 Simmondsia chinensis HOM05D005886 ORTHO05D007512 5.3e-50 201.1 135 70.4
Lj3A922T58 Lonicera japonica HOM05D005886 ORTHO05D007512 7.0e-50 200.7 136 69.1
Cfa004262 Carpinus fangiana HOM05D005886 ORTHO05D007512 4.5e-49 198.0 136 67.6
Cpa.g.sc33.126 Carica papaya HOM05D005886 ORTHO05D007512 7.7e-49 197.2 134 67.9
Nn6g34619 Nelumbo nucifera HOM05D005886 ORTHO05D007512 7.7e-49 197.2 132 70.5
TAR623G1656 Trochodendron aralioides HOM05D005886 ORTHO05D007512 7.7e-49 197.2 133 69.2
SalBow3G3384 Salvia bowleyana HOM05D005886 ORTHO05D007512 1.7e-48 196.1 135 67.4
MSTRG.9023 Avicennia marina HOM05D005886 ORTHO05D007512 8.5e-48 193.7 135 66.7
Gorai.003G100800 Gossypium raimondii HOM05D005886 ORTHO05D007512 2.5e-47 192.2 130 70.8
Thecc.03G100000 Theobroma cacao HOM05D005886 ORTHO05D007512 5.5e-47 191.0 138 69.6
Ciclev10016560m.g Citrus clementina HOM05D005886 ORTHO05D007512 3.6e-46 188.3 133 69.2
Rhsim03G0094200 Rhododendron simsii HOM05D005886 ORTHO05D007512 4.7e-46 188.0 212 50.0
Sed0002183 Sechium edule HOM05D005886 ORTHO05D007512 4.7e-46 188.0 135 65.9
TWI63G1702 Tripterygium wilfordii HOM05D005886 ORTHO05D007512 4.7e-46 188.0 137 67.9
Gohir.D03G096100 Gossypium hirsutum HOM05D005886 ORTHO05D007512 8.0e-46 187.2 131 68.7
THA.LOC104803777 Tarenaya hassleriana HOM05D005886 ORTHO05D007512 1.4e-45 186.4 128 65.6
QL04p048796 Quercus lobata HOM05D005886 ORTHO05D007512 1.8e-45 186.0 135 65.9
COL.COLO4_37594 Corchorus olitorius HOM05D005886 ORTHO05D007512 3.0e-45 185.3 135 65.9
ECA238G0088 Erigeron canadensis HOM05D005886 ORTHO05D007512 6.7e-45 184.1 131 66.4
SGA_v2.0_scaffold13G06426 Striga asiatica HOM05D005886 ORTHO05D007512 6.7e-45 184.1 133 63.9
ClCG08G008440 Citrullus lanatus HOM05D005886 ORTHO05D007512 8.8e-45 183.7 133 64.7
MBI11_g01323_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 1.5e-44 183.0 133 66.2
EL10Ac4g08740 Beta vulgaris HOM05D005886 ORTHO05D007512 2.0e-44 182.6 139 62.6
Lsat_1_v5_gn_2_106281 Lactuca sativa HOM05D005886 ORTHO05D007512 3.3e-44 181.8 131 67.2
Prupe.2G074600 Prunus persica HOM05D005886 ORTHO05D007512 5.7e-44 181.0 138 63.8
CANSAT56G3685 Cannabis sativa HOM05D005886 ORTHO05D007512 9.7e-44 180.3 143 63.6
vmacro07275 Vaccinium macrocarpon HOM05D005886 ORTHO05D007512 2.2e-43 179.1 207 50.2
PGR142G2015 Punica granatum HOM05D005886 ORTHO05D007512 2.8e-43 178.7 129 62.8
DCAR_025632 Daucus carota HOM05D005886 ORTHO05D007512 3.7e-43 178.3 132 64.4
MD02G1258000 Malus domestica HOM05D005886 ORTHO05D007512 8.2e-43 177.2 138 62.3
Carub.0007s0794 Capsella rubella HOM05D005886 ORTHO05D007512 1.4e-42 176.4 135 62.2
HanXRQChr07g0194431 Helianthus annuus HOM05D005886 ORTHO05D007512 1.4e-42 176.4 131 64.1
CARHR240580 Cardamine hirsuta HOM05D005886 ORTHO05D007512 2.4e-42 175.6 134 61.9
C01p06350 Brassica napus HOM05D005886 ORTHO05D007512 3.1e-42 175.3 133 62.4
BolC1t00631H Brassica oleracea HOM05D005886 ORTHO05D007512 3.1e-42 175.3 133 62.4
MELO3C019914.2 Cucumis melo HOM05D005886 ORTHO05D007512 3.1e-42 175.3 133 64.7
CDE10G0808 Ceratophyllum demersum HOM05D005886 ORTHO05D007512 4.1e-42 174.9 132 62.1
Cc02_g09270 Coffea canephora HOM05D005886 ORTHO05D007512 4.1e-42 174.9 139 61.2
Migut.F00830 Erythranthe guttata HOM05D005886 ORTHO05D007512 4.1e-42 174.9 133 62.4
AL7G19160 Arabidopsis lyrata HOM05D005886 ORTHO05D007512 5.3e-42 174.5 133 61.7
A01p05780 Brassica napus HOM05D005886 ORTHO05D007512 5.3e-42 174.5 127 65.4
BraA01t00547Z Brassica rapa HOM05D005886 ORTHO05D007512 5.3e-42 174.5 127 65.4
CSS0035441 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 5.3e-42 174.5 83 98.8
CsaV3_6G004430 Cucumis sativus L. HOM05D005886 ORTHO05D007512 5.3e-42 174.5 133 65.4
BcaC09g52051 Brassica carinata HOM05D005886 ORTHO05D007512 9.1e-42 173.7 133 61.7
Atru.chr12.1089 Acer truncatum HOM05D005886 ORTHO05D007512 1.2e-41 173.3 124 64.5
Aqoxy1G00613 Aquilegia oxysepala HOM05D005886 ORTHO05D007512 1.6e-41 172.9 132 61.4
Manes.10G059400 Manihot esculenta HOM05D005886 ORTHO05D007512 1.6e-41 172.9 137 62.0
Aa31sc91G60 Aethionema arabicum HOM05D005886 ORTHO05D007512 2.0e-41 172.6 137 59.1
Lalb_Chr04g0248371 Lupinus albus HOM05D005886 ORTHO05D007512 2.0e-41 172.6 129 58.9
AT4G32605 Arabidopsis thaliana HOM05D005886 ORTHO05D007512 2.7e-41 172.2 133 60.9
Ca_30698_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 4.5e-41 171.4 136 60.3
Thhalv10026176m.g Eutrema salsugineum HOM05D005886 ORTHO05D007512 1.7e-40 169.5 135 60.0
TPR.G1192 Trifolium pratense HOM05D005886 ORTHO05D007512 2.2e-40 169.1 131 61.8
Potri.010G244500 Populus trichocarpa HOM05D005886 ORTHO05D007512 2.9e-40 168.7 138 57.2
FAN10G0591 Fragaria x ananassa HOM05D005886 ORTHO05D007512 3.8e-40 168.3 129 62.0
FvH4_7g05470 Fragaria vesca HOM05D005886 ORTHO05D007512 5.0e-40 167.9 129 62.0
FAN01G1003 Fragaria x ananassa HOM05D005886 ORTHO05D007512 5.0e-40 167.9 129 62.0
Sp7g30380 Schrenkiella parvula HOM05D005886 ORTHO05D007512 5.0e-40 167.9 135 60.0
Medtr5g093000 Medicago truncatula HOM05D005886 ORTHO05D007512 8.5e-40 167.2 136 60.3
Hund07230 Selenicereus undatus HOM05D005886 ORTHO05D007512 1.1e-39 166.8 132 61.4
FvH4_7g05420 Fragaria vesca HOM05D005886 ORTHO05D007512 1.5e-39 166.4 129 62.8
FAN01G0807 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.5e-39 166.4 129 62.8
Potri.008G015600 Populus trichocarpa HOM05D005886 ORTHO05D007512 1.5e-39 166.4 136 58.8
Glyma.14G022800 Glycine max HOM05D005886 ORTHO05D007512 2.5e-39 165.6 125 60.8
Phvul.008G268400 Phaseolus vulgaris HOM05D005886 ORTHO05D007512 2.5e-39 165.6 129 58.9
Glyma.02G291900 Glycine max HOM05D005886 ORTHO05D007512 9.4e-39 163.7 125 59.2
unitig_46.g18648 Utricularia gibba HOM05D005886 ORTHO05D007512 9.4e-39 163.7 130 56.9
VMungo0647G0838 Vigna mungo HOM05D005886 ORTHO05D007512 9.4e-39 163.7 122 60.7
Psat2g011680 Pisum sativum HOM05D005886 ORTHO05D007512 1.2e-38 163.3 136 58.1
HPP92_013285 Vanilla planifolia HOM05D005886 ORTHO05D007512 1.6e-38 162.9 137 59.9
HPP92_013299 Vanilla planifolia HOM05D005886 ORTHO05D007512 1.6e-38 162.9 137 59.9
LjContig00272g0011155 Lotus japonicus HOM05D005886 ORTHO05D007512 2.1e-38 162.5 130 59.2
MBI11_g46414_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 1.0e-37 160.2 160 53.1
FAN03G3046 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.4e-37 159.8 133 59.4
arahy.Tifrunner.gnm1.ann1.884D9P Arachis hypogaea HOM05D005886 ORTHO05D007512 5.2e-37 157.9 131 59.5
arahy.Tifrunner.gnm1.ann1.VD7X19 Arachis hypogaea HOM05D005886 ORTHO05D007512 5.2e-37 157.9 131 59.5
RcHm_v2.0_Chr1g0332231 Rosa chinensis HOM05D005886 ORTHO05D007512 2.0e-36 156.0 114 62.3
Sabra10G0191000 Salix brachista HOM05D005886 ORTHO05D007512 5.7e-36 154.5 129 58.1
arahy.Tifrunner.gnm1.ann1.G6ZNRX Arachis hypogaea HOM05D005886 ORTHO05D007512 7.5e-36 154.1 115 63.5
arahy.Tifrunner.gnm1.ann1.AJNI4B Arachis hypogaea HOM05D005886 ORTHO05D007512 1.7e-35 152.9 115 62.6
Os01g0771100 Oryza sativa ssp. japonica HOM05D005886 ORTHO05D007512 1.4e-34 149.8 119 61.3
FAN10G3562 Fragaria x ananassa HOM05D005886 ORTHO05D007512 2.4e-34 149.1 121 61.2
arahy.Tifrunner.gnm1.ann1.V9EI6C Arachis hypogaea HOM05D005886 ORTHO05D007512 5.4e-34 147.9 115 62.6
arahy.Tifrunner.gnm1.ann1.WENH69 Arachis hypogaea HOM05D005886 ORTHO05D007512 5.4e-34 147.9 115 62.6
C03p87240 Brassica napus HOM05D005886 ORTHO05D007512 2.0e-33 146.0 119 63.0
BolC3t21025H Brassica oleracea HOM05D005886 ORTHO05D007512 2.0e-33 146.0 119 63.0
SHI21255 Sapria himalayana HOM05D005886 ORTHO05D007512 5.5e-31 137.9 129 53.5
ATR1127G050 Amborella trichopoda HOM05D005886 ORTHO05D007512 8.8e-29 130.6 143 45.5
CAN.G143.55 Capsicum annuum HOM05D005886 ORTHO05D007512 1.7e-27 126.3 77 79.2
SEGI_05706 Sequoiadendron giganteum HOM05D005886 ORTHO05D007512 2.4e-26 122.5 121 51.2
Lj3A921T39 Lonicera japonica HOM05D005886 ORTHO05D007512 5.4e-26 121.3 76 71.1
Gohir.A03G069600 Gossypium hirsutum HOM05D005886 ORTHO05D007512 2.7e-25 119.0 77 75.3
PSO384G2277 Papaver somniferum HOM05D005886 ORTHO05D007512 8.6e-24 114.0 90 58.9
Nn7g36032 Nelumbo nucifera HOM05D005886 ORTHO05D007512 9.5e-23 110.5 76 68.4
PSO339G0105 Papaver somniferum HOM05D005886 ORTHO05D007512 1.6e-22 109.8 90 56.7
Ca_06327_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 1.4e-21 106.7 75 66.7
BcaB05g22897 Brassica carinata HOM05D005886 ORTHO05D007512 6.8e-21 104.4 76 65.8
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 2.2e-19 99.4 75 58.7
Sabra08G0009500 Salix brachista HOM05D005886 ORTHO05D007512 1.1e-18 97.1 77 59.7
BcaC01g01011 Brassica carinata HOM05D005886 ORTHO05D007512 9.8e-12 73.9 99 44.4
Zm00001eb151940 Zea mays HOM05D005886 ORTHO05D007512 2.4e-10 69.3 61 55.7
Psat6g052440 Pisum sativum HOM05D005886 ORTHO05D007512 4.1e-10 68.6 60 56.7
Zm00001eb216850 Zea mays HOM05D013194 ORTHO05D015061 4.1e-10 68.6 57 56.1
Haze_21443 Corylus avellana HOM05D001009 ORTHO05D000829 1.6e-09 66.6 121 34.7
AT1G80720 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 2.0e-09 66.2 104 29.8
C01p06130 Brassica napus HOM05D005886 ORTHO05D002661 3.5e-09 65.5 40 62.5
BolC1t00611H Brassica oleracea HOM05D005886 ORTHO05D002661 3.5e-09 65.5 40 62.5
Thhalv10019068m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 1.3e-08 63.5 104 28.8
Sp5g35030 Schrenkiella parvula HOM05D001009 ORTHO05D000829 1.7e-08 63.2 104 28.8
Carub.0002s2683 Capsella rubella HOM05D001009 ORTHO05D000829 3.0e-08 62.4 104 27.9
CARHR073770 Cardamine hirsuta HOM05D001009 ORTHO05D000829 3.9e-08 62.0 104 29.8
Nn8g39766 Nelumbo nucifera HOM05D001009 ORTHO05D000829 5.0e-08 61.6 121 32.2
A07p44970 Brassica napus HOM05D001009 ORTHO05D000829 6.6e-08 61.2 103 30.1
RcHm_v2.0_Chr2g0133381 Rosa chinensis HOM05D001009 ORTHO05D000829 6.6e-08 61.2 118 29.7
Ciclev10026378m.g Citrus clementina HOM05D001009 ORTHO05D000829 8.6e-08 60.8 116 32.8
A04p04370 Brassica napus HOM05D001009 ORTHO05D000829 1.5e-07 60.1 127 26.8
BcaC08g47550 Brassica carinata HOM05D001009 ORTHO05D000829 1.9e-07 59.7 103 29.1
BolC6t40393H Brassica oleracea HOM05D001009 ORTHO05D000829 1.9e-07 59.7 103 29.1
CSS0039760 Camellia sinensis var. sinensis HOM05D001009 ORTHO05D000829 1.9e-07 59.7 115 31.3
BraA04t16147Z Brassica rapa HOM05D001009 ORTHO05D000829 2.5e-07 59.3 123 30.1
Aqoxy1G00831 Aquilegia oxysepala HOM05D001009 ORTHO05D000829 3.3e-07 58.9 120 29.2
C06p53750 Brassica napus HOM05D001009 ORTHO05D000829 4.3e-07 58.5 103 29.1
Os01g0143300 Oryza sativa ssp. japonica HOM05D001009 ORTHO05D000829 4.3e-07 58.5 101 31.7
QL02p019823 Quercus lobata HOM05D001009 ORTHO05D000829 4.3e-07 58.5 121 30.6
SGA_v2.0_scaffold5G02758 Striga asiatica HOM05D001009 ORTHO05D000829 4.3e-07 58.5 119 29.4
unitig_0.g1108 Utricularia gibba HOM05D001009 ORTHO05D000829 4.3e-07 58.5 121 27.3
BcaB02g08407 Brassica carinata HOM05D001009 ORTHO05D000829 5.6e-07 58.2 124 30.6
BraA07t32002Z Brassica rapa HOM05D001009 ORTHO05D000829 5.6e-07 58.2 103 29.1
CANSAT56G0269 Cannabis sativa HOM05D001009 ORTHO05D000829 5.6e-07 58.2 123 30.1
SalBow7G3573 Salvia bowleyana HOM05D001009 ORTHO05D000829 5.6e-07 58.2 118 28.0
AL1G28030 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 7.3e-07 57.8 104 27.9
AL5G36810 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 7.3e-07 57.8 125 32.0
EL10Ac2g04138 Beta vulgaris HOM05D001009 ORTHO05D000829 7.3e-07 57.8 120 31.7
Dinv09912 Davidia involucrata HOM05D001009 ORTHO05D000829 9.5e-07 57.4 103 31.1
QL05p035196 Quercus lobata HOM05D001009 ORTHO05D000829 1.2e-06 57.0 120 28.3
MELO3C016977.2 Cucumis melo HOM05D001009 ORTHO05D000829 1.6e-06 56.6 119 28.6
CiPaw.07G228200 Carya illinoinensis HOM05D001009 ORTHO05D000829 2.1e-06 56.2 115 32.2
CsaV3_4G036750 Cucumis sativus L. HOM05D001009 ORTHO05D000829 2.1e-06 56.2 120 28.3
Lalb_Chr03g0042541 Lupinus albus HOM05D001009 ORTHO05D000829 2.1e-06 56.2 124 29.0
MD15G1037100 Malus domestica HOM05D001009 ORTHO05D000829 2.1e-06 56.2 121 31.4
GSVIVG01035906001 Vitis vinifera HOM05D001009 ORTHO05D000829 2.1e-06 56.2 118 30.5
Hund06528 Selenicereus undatus HOM05D001009 ORTHO05D000829 2.8e-06 55.8 122 27.9
Cc04_g04940 Coffea canephora HOM05D001009 ORTHO05D000829 3.6e-06 55.5 105 26.7
Phvul.008G115200 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 3.6e-06 55.5 98 31.6
AT3G55605 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 4.7e-06 55.1 94 31.9
CARHR165660 Cardamine hirsuta HOM05D001009 ORTHO05D000829 4.7e-06 55.1 94 33.0
HPP92_015487 Vanilla planifolia HOM05D001009 ORTHO05D000829 4.7e-06 55.1 118 31.4
BcaC02g09772 Brassica carinata HOM05D001009 ORTHO05D000829 6.2e-06 54.7 124 30.6
C04p36760 Brassica napus HOM05D001009 ORTHO05D000829 6.2e-06 54.7 124 30.6
Nitab4.5_0003811g0040 Nicotiana tabacum HOM05D001009 ORTHO05D000829 6.2e-06 54.7 119 31.1
BolC4t25121H Brassica oleracea HOM05D001009 ORTHO05D000829 8.1e-06 54.3 124 29.8
Eucgr.G02989 Eucalyptus grandis HOM05D001009 ORTHO05D000829 8.1e-06 54.3 128 26.6
Glyma.18G187800 Glycine max HOM05D001009 ORTHO05D000829 8.1e-06 54.3 94 30.9
THA.LOC104810052 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 8.1e-06 54.3 94 33.0


User provided reference genes

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