Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.7e-51 204.5 100 100.0
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.4e-34 149.4 94 76.6
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.6e-33 146.0 100 70.0
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 6.0e-33 144.1 100 69.0
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.3e-32 142.9 100 71.0
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 8.7e-32 140.2 100 67.0
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 8.7e-32 140.2 100 67.0
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 2.5e-31 138.7 91 75.8
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 3.3e-31 138.3 104 67.3
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.4e-29 132.9 100 67.0
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 1.5e-28 129.4 100 65.0
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 7.6e-28 127.1 100 65.0
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 7.6e-28 127.1 101 64.4
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.3e-27 126.3 102 65.7
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 1.7e-27 125.9 101 63.4
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.2e-27 125.6 102 66.7
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 2.9e-27 125.2 102 67.6
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.4e-27 124.0 103 65.0
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 1.4e-26 122.9 97 59.8
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 5.4e-26 120.9 97 60.8
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 5.4e-26 120.9 100 66.0
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 7.1e-26 120.6 100 62.0
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.6e-25 119.4 97 58.8
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 2.7e-25 118.6 97 57.7
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.7e-25 118.6 103 59.2
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.0e-25 117.5 104 61.5
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 5.1e-24 114.4 97 60.8
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 8.7e-24 113.6 97 58.8
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 1.1e-23 113.2 97 57.7
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.3e-23 111.7 100 54.0
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 1.3e-22 109.8 101 58.4
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.6e-22 109.4 100 55.0
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 2.8e-22 108.6 100 56.0
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 3.6e-22 108.2 102 54.9
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 1.8e-21 105.9 98 56.1
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 2.4e-21 105.5 95 57.9
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 4.0e-21 104.8 100 53.0
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 9.0e-21 103.6 97 53.6
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 2.6e-20 102.1 98 54.1
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 3.4e-20 101.7 101 53.5
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 5.8e-20 100.9 98 53.1
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 1.7e-19 99.4 98 53.1
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 2.2e-19 99.0 89 53.9
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 2.2e-19 99.0 97 54.6
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 2.9e-19 98.6 97 54.6
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 2.9e-19 98.6 97 54.6
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 4.9e-19 97.8 97 54.6
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 6.4e-19 97.4 98 52.0
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 8.4e-19 97.1 97 53.6
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 1.1e-18 96.7 98 52.0
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 1.1e-18 96.7 89 55.1
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 3.2e-18 95.1 99 54.5
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 7.1e-18 94.0 97 53.6
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 2.1e-17 92.4 97 50.5
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 2.7e-17 92.0 98 53.1
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 4.6e-17 91.3 97 49.5
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 6.0e-17 90.9 97 54.6
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 6.0e-17 90.9 97 54.6
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 7.9e-17 90.5 92 56.5
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 7.9e-17 90.5 97 52.6
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 7.9e-17 90.5 100 49.0
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-16 90.1 101 49.5
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-16 90.1 101 49.5
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.8e-16 89.4 97 49.5
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 1.8e-16 89.4 98 50.0
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 1.8e-16 89.4 97 48.5
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.3e-16 89.0 98 56.1
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 3.0e-16 88.6 100 49.0
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 5.1e-16 87.8 92 53.3
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 5.1e-16 87.8 97 45.4
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 5.1e-16 87.8 97 53.6
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 6.7e-16 87.4 98 49.0
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.9e-15 85.9 98 49.0
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 4.3e-15 84.7 97 45.4
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 5.6e-15 84.3 100 51.0
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 1.3e-14 83.2 97 45.4
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.6e-14 82.8 97 48.5
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 2.1e-14 82.4 101 46.5
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 8.1e-14 80.5 97 46.4
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.4e-13 79.7 82 51.2
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 1.8e-13 79.3 89 52.8
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 2.4e-13 79.0 96 44.8
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 3.1e-13 78.6 97 41.2
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 9.0e-13 77.0 98 40.8
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 2.0e-12 75.9 95 50.5
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 2.6e-12 75.5 101 45.5
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 5.8e-12 74.3 100 47.0
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 5.8e-12 74.3 100 47.0
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 2.2e-11 72.4 100 45.0
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 2.2e-11 72.4 96 43.8
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 2.9e-11 72.0 101 45.5
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 4.9e-11 71.2 100 41.0
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 4.9e-11 71.2 100 43.0
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 4.9e-11 71.2 92 46.7
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 6.5e-11 70.9 89 47.2
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 1.1e-10 70.1 97 39.2
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 1.9e-10 69.3 100 39.0
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 4.2e-10 68.2 101 40.6
Nitab4.5_0011184g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 5.5e-10 67.8 95 45.3
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 9.3e-10 67.0 100 43.0
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 9.3e-10 67.0 100 41.0
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 1.2e-09 66.6 96 40.6
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 1.6e-09 66.2 96 39.6
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 1.6e-09 66.2 96 39.6
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.6e-09 66.2 100 47.0
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 2.1e-09 65.9 101 41.6
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 2.1e-09 65.9 101 41.6
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 3.5e-09 65.1 98 39.8
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.5e-09 65.1 96 43.8
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 4.6e-09 64.7 100 39.0
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 4.6e-09 64.7 100 39.0
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 4.6e-09 64.7 100 39.0
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 4.6e-09 64.7 100 39.0
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 4.6e-09 64.7 100 39.0
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 4.6e-09 64.7 97 42.3
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 6.0e-09 64.3 96 36.5
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 7.9e-09 63.9 100 46.0
Sc21g0002480 Simmondsia chinensis HOM05D004838 ORTHO05D005373 7.9e-09 63.9 96 41.7
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 7.9e-09 63.9 101 36.6
Lsat_1_v5_gn_3_40020 Lactuca sativa HOM05D004838 ORTHO05D005373 1.0e-08 63.5 82 41.5
ECA246G1803 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.3e-08 63.2 100 41.0
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 1.8e-08 62.8 100 43.0
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 1.8e-08 62.8 96 37.5
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 1.8e-08 62.8 96 37.5
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 5.1e-08 61.2 98 38.8
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 5.1e-08 61.2 94 39.4
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 5.1e-08 61.2 96 40.6
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 8.7e-08 60.5 100 41.0
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 8.7e-08 60.5 96 38.5
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 1.5e-07 59.7 105 39.0
HPP92_001805 Vanilla planifolia HOM05D004838 ORTHO05D005373 1.5e-07 59.7 101 34.7
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 1.9e-07 59.3 96 37.5
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 3.3e-07 58.5 102 37.3
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.3e-07 58.5 94 39.4
PGR142G2454 Punica granatum HOM05D000831 ORTHO05D000660 4.3e-07 58.2 102 40.2
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 4.3e-07 58.2 101 39.6
CSS0048593 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 7.4e-07 57.4 102 37.3
CAN.G508.8 Capsicum annuum HOM05D000831 ORTHO05D000660 7.4e-07 57.4 103 37.9
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 7.4e-07 57.4 98 33.7
Sc21g0002510 Simmondsia chinensis HOM05D004838 ORTHO05D005373 7.4e-07 57.4 94 39.4
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 9.6e-07 57.0 97 36.1
Nn1g07823 Nelumbo nucifera HOM05D000831 ORTHO05D000660 1.3e-06 56.6 103 39.8
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 1.6e-06 56.2 96 36.5
MBI02_g37327_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 1.6e-06 56.2 102 38.2
Nn1g07825 Nelumbo nucifera HOM05D000831 ORTHO05D000660 1.6e-06 56.2 104 39.4
Nn1g07826 Nelumbo nucifera HOM05D000831 ORTHO05D000660 1.6e-06 56.2 103 36.9
Nn1g07832 Nelumbo nucifera HOM05D000831 ORTHO05D000660 1.6e-06 56.2 104 39.4
MBI02_g37331_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.1e-06 55.8 102 38.2
Nn1g00002 Nelumbo nucifera HOM05D000831 ORTHO05D000660 2.1e-06 55.8 103 39.8
Nn1g07821 Nelumbo nucifera HOM05D000831 ORTHO05D000660 2.1e-06 55.8 103 39.8
Nn1g07824 Nelumbo nucifera HOM05D000831 ORTHO05D000660 2.1e-06 55.8 103 39.8
Nn1g07836 Nelumbo nucifera HOM05D000831 ORTHO05D000660 2.1e-06 55.8 103 37.9
Psat5g268680 Pisum sativum HOM05D000831 ORTHO05D000660 2.1e-06 55.8 106 42.5
CSS0015806 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 2.8e-06 55.5 102 36.3
CAN.G508.4 Capsicum annuum HOM05D000831 ORTHO05D000660 2.8e-06 55.5 103 38.8
MBI02_g37328_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.8e-06 55.5 102 38.2
PGR142G1549 Punica granatum HOM05D000831 ORTHO05D000660 2.8e-06 55.5 93 40.9
QL02p042335 Quercus lobata HOM05D004838 ORTHO05D005373 2.8e-06 55.5 36 72.2
CSS0022903 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 3.7e-06 55.1 102 36.3
CSS0049002 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 3.7e-06 55.1 102 36.3
Ca_01542_v3 Cicer arietinum L. HOM05D000831 ORTHO05D000660 3.7e-06 55.1 108 35.2
CSS0037125 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 4.8e-06 54.7 102 36.3
MBI02_g37326_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 4.8e-06 54.7 102 35.3
Nn1g07835 Nelumbo nucifera HOM05D000831 ORTHO05D000660 4.8e-06 54.7 104 39.4
Psat5g268720 Pisum sativum HOM05D000831 ORTHO05D000660 4.8e-06 54.7 101 35.6
Ca_01541_v3 Cicer arietinum L. HOM05D000831 ORTHO05D000660 6.2e-06 54.3 101 38.6
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 6.2e-06 54.3 97 35.1
Medtr2g089965 Medicago truncatula HOM05D000831 ORTHO05D000660 6.2e-06 54.3 103 39.8
Nn1g07834 Nelumbo nucifera HOM05D000831 ORTHO05D000660 6.2e-06 54.3 103 37.9
CANSAT11G1852 Cannabis sativa HOM05D000831 ORTHO05D000660 8.2e-06 53.9 101 31.7
COL.COLO4_13653 Corchorus olitorius HOM05D000831 ORTHO05D000660 8.2e-06 53.9 102 34.3
Dinv15499 Davidia involucrata HOM05D000831 ORTHO05D000660 8.2e-06 53.9 103 34.0
Medtr2g089940 Medicago truncatula HOM05D000831 ORTHO05D000660 8.2e-06 53.9 103 39.8
Medtr2g089960 Medicago truncatula HOM05D000831 ORTHO05D000660 8.2e-06 53.9 103 39.8
Medtr2g089985 Medicago truncatula HOM05D000831 ORTHO05D000660 8.2e-06 53.9 103 39.8
Nn1g07830 Nelumbo nucifera HOM05D000831 ORTHO05D000660 8.2e-06 53.9 103 37.9
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 8.2e-06 53.9 97 40.2
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 8.2e-06 53.9 99 38.4


User provided reference genes

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