Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009096 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1720.3 950 100.0
CSS0047270 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1656.3 971 94.9
CSS0028328 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1422.9 930 86.9
CSS0024766 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1222.2 907 79.9
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1133.2 892 73.3
CSS0007490 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1114.8 703 90.2
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1084.3 921 68.1
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1077.8 903 70.9
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 7.5e-141 505.8 902 40.1
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 1.8e-126 458.0 898 40.3
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.0e-110 405.6 902 36.3
vmacro07090 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 7.0e-107 392.9 902 35.8
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.8e-70 271.9 163 86.5
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 2.4e-70 271.6 969 31.5
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.6e-63 248.8 162 79.0
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 2.1e-63 248.4 876 32.2
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 8.7e-57 226.5 907 29.8
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.0e-52 213.0 798 31.1
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 6.7e-41 173.7 827 27.7
DCAR_015272 Daucus carota HOM05D003265 ORTHO05D015078 2.6e-32 145.2 855 26.2
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 2.9e-28 131.7 718 26.5
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 5.0e-28 131.0 702 26.5
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 4.7e-26 124.4 676 26.3
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 6.1e-26 124.0 948 24.6
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 8.0e-26 123.6 414 32.1
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 1.8e-25 122.5 943 24.9
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 2.0e-24 119.0 812 25.5
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 2.0e-24 119.0 632 27.1
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 2.6e-24 118.6 742 26.5
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 4.8e-23 114.4 424 29.0
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 1.4e-22 112.8 825 27.5
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 1.8e-22 112.5 827 24.9
Cfa001593 Carpinus fangiana HOM05D003265 ORTHO05D003819 4.1e-22 111.3 483 28.4
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 4.1e-22 111.3 820 25.5
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 2.0e-21 109.0 710 26.5
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 3.5e-21 108.2 909 25.9
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 5.9e-21 107.5 707 27.3
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.9e-21 107.5 450 29.3
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 7.7e-21 107.1 754 28.0
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.0e-20 106.7 290 34.8
Potri.010G217000 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.7e-20 105.9 303 34.7
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 8.5e-20 103.6 423 29.1
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 8.5e-20 103.6 713 25.0
Ciclev10033690m.g Citrus clementina HOM05D003265 ORTHO05D003819 1.5e-19 102.8 421 29.9
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 1.9e-19 102.4 648 28.9
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 7.2e-19 100.5 897 25.1
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 2.1e-18 99.0 639 25.5
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 2.7e-18 98.6 798 24.9
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 3.6e-18 98.2 830 25.2
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 1.4e-17 96.3 608 27.1
FAN10G1642 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.0e-17 95.1 489 26.4
Sabra08G0030800 Salix brachista HOM05D003265 ORTHO05D003819 5.2e-17 94.4 299 31.8
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 6.8e-17 94.0 420 28.6
Cc09_g02720 Coffea canephora HOM05D014857 ORTHO05D015078 6.8e-17 94.0 453 29.6
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 6.8e-17 94.0 215 35.8
Peaxi162Scf00122g00211 Petunia axillaris HOM05D014857 ORTHO05D015078 2.6e-16 92.0 475 27.8
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 4.4e-16 91.3 600 27.5
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 7.5e-16 90.5 674 25.1
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 1.3e-15 89.7 715 26.4
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 2.8e-15 88.6 803 25.3
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 2.8e-15 88.6 825 24.2
Actinidia05271 Actinidia chinensis HOM05D003265 ORTHO05D003819 3.7e-15 88.2 645 29.0
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.1e-14 86.7 445 26.3
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 1.8e-14 85.9 136 39.7
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 1.8e-14 85.9 136 39.7
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 1.8e-14 85.9 135 42.2
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 1.8e-14 85.9 926 24.9
TWI63G0250 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.8e-14 85.9 391 29.7
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.4e-14 85.5 894 27.2
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 4.1e-14 84.7 223 34.5
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 4.1e-14 84.7 788 25.6
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 4.1e-14 84.7 927 25.0
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 7.0e-14 84.0 260 31.5
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 9.1e-14 83.6 754 25.9
FAN06G2521 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.2e-13 83.2 424 29.7
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.2e-13 83.2 439 26.4
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.0e-13 82.4 438 25.8
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 2.0e-13 82.4 135 43.7
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 2.0e-13 82.4 951 23.7
TWI38G2066 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.0e-13 82.4 449 26.1
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 4.5e-13 81.3 229 31.9
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 1.7e-12 79.3 127 39.4
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 2.9e-12 78.6 139 39.6
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 2.9e-12 78.6 900 23.1
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 2.9e-12 78.6 214 35.5
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 3.8e-12 78.2 806 25.2
PGSC0003DMG400002154 Solanum tuberosum HOM05D014857 ORTHO05D015078 3.8e-12 78.2 107 44.9
ECA246G3041 Erigeron canadensis HOM05D003265 ORTHO05D003819 6.5e-12 77.4 411 27.3
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 1.1e-11 76.6 245 31.0
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 1.5e-11 76.3 338 28.7
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 1.9e-11 75.9 137 40.1
Ciclev10011133m.g Citrus clementina HOM05D003265 ORTHO05D003819 3.2e-11 75.1 336 27.7
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 3.2e-11 75.1 739 25.2
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 3.2e-11 75.1 181 34.8
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 3.2e-11 75.1 662 22.8
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 4.2e-11 74.7 728 26.5
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 4.2e-11 74.7 703 23.2
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 7.2e-11 73.9 350 28.0
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 7.2e-11 73.9 702 23.5
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 7.2e-11 73.9 641 26.4
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 1.2e-10 73.2 133 38.3
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 1.2e-10 73.2 621 25.9
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.6e-10 72.8 740 24.1
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 2.1e-10 72.4 204 31.4
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 2.1e-10 72.4 274 28.5
CsaV3_5G026000 Cucumis sativus L. HOM05D003265 ORTHO05D003819 2.8e-10 72.0 316 27.8
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 2.8e-10 72.0 733 23.9
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 3.6e-10 71.6 87 47.1
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 3.6e-10 71.6 735 23.5
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 4.7e-10 71.2 454 24.2
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 4.7e-10 71.2 727 23.8
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 4.7e-10 71.2 605 25.6
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 8.0e-10 70.5 372 28.2
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 1.0e-09 70.1 651 24.7
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.4e-09 69.7 707 23.5
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.4e-09 69.7 211 31.3
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 1.4e-09 69.7 161 36.6
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 1.8e-09 69.3 304 30.3
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 2.3e-09 68.9 224 29.0
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 3.0e-09 68.6 802 23.9
Actinidia13105 Actinidia chinensis HOM05D003265 ORTHO05D003819 4.0e-09 68.2 340 30.3
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 4.0e-09 68.2 229 31.9
VMungo0464G0131 Vigna mungo HOM05D003265 ORTHO05D003819 4.0e-09 68.2 357 27.7
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 5.2e-09 67.8 335 27.8
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 5.2e-09 67.8 854 24.0
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 5.2e-09 67.8 315 29.5
Potri.016G085600 Populus trichocarpa HOM05D003265 ORTHO05D003819 6.8e-09 67.4 324 29.6
Solyc06g005660.3 Solanum lycopersicum HOM05D014857 ORTHO05D015078 6.8e-09 67.4 398 28.6
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 6.8e-09 67.4 139 38.8
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 6.8e-09 67.4 399 28.3
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 6.8e-09 67.4 619 25.2
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 8.8e-09 67.0 123 39.8
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 8.8e-09 67.0 123 39.8
Lsat_1_v5_gn_9_68001 Lactuca sativa HOM05D014857 ORTHO05D015078 8.8e-09 67.0 383 27.9
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 8.8e-09 67.0 95 40.0
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 1.2e-08 66.6 363 28.1
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 1.2e-08 66.6 287 27.2
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 1.2e-08 66.6 180 35.6
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 1.5e-08 66.2 185 32.4
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.5e-08 66.2 211 30.8
HanXRQChr09g0246531 Helianthus annuus HOM05D014857 ORTHO05D015078 2.6e-08 65.5 346 24.9
Lj2A107T58 Lonicera japonica HOM05D003265 ORTHO05D003819 2.6e-08 65.5 384 28.4
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 2.6e-08 65.5 136 33.1
Sopen06g001640 Solanum pennellii HOM05D014857 ORTHO05D015078 2.6e-08 65.5 407 29.0
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 3.4e-08 65.1 85 44.7
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 3.4e-08 65.1 121 44.6
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 3.4e-08 65.1 200 33.5
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 3.4e-08 65.1 208 30.8
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 4.4e-08 64.7 123 39.0
Lj1g0005050 Lotus japonicus HOM05D003265 ORTHO05D003819 4.4e-08 64.7 115 38.3
Phvul.004G075600 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 4.4e-08 64.7 87 39.1
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 4.4e-08 64.7 97 42.3
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 4.4e-08 64.7 162 34.0
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 7.5e-08 63.9 190 31.1
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 7.5e-08 63.9 91 42.9
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 7.5e-08 63.9 452 25.2
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 9.8e-08 63.5 119 37.8
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 1.3e-07 63.2 135 34.8
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 1.3e-07 63.2 626 25.2
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.7e-07 62.8 109 38.5
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 1.7e-07 62.8 184 31.0
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 1.7e-07 62.8 188 29.8
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 1.7e-07 62.8 596 25.5
Lalb_Chr19g0129491 Lupinus albus HOM05D003265 ORTHO05D003819 2.2e-07 62.4 119 32.8
Oeu057239.1 Olea europaea HOM05D003265 ORTHO05D015078 2.2e-07 62.4 553 26.8
CAN.G608.11 Capsicum annuum HOM05D003265 ORTHO05D003819 2.8e-07 62.0 309 28.8
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 2.8e-07 62.0 114 40.4
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 2.8e-07 62.0 394 29.9
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 2.8e-07 62.0 304 29.3
ECA246G0591 Erigeron canadensis HOM05D014857 ORTHO05D015078 3.7e-07 61.6 81 45.7
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 4.9e-07 61.2 588 25.5
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 1.1e-06 60.1 167 32.9
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 1.1e-06 60.1 123 39.0
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 1.8e-06 59.3 93 41.9
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 1.8e-06 59.3 360 27.2
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 7.0e-06 57.4 714 24.1
MD01G1131600 Malus domestica HOM05D003265 ORTHO05D003819 7.0e-06 57.4 210 29.0
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 9.2e-06 57.0 79 39.2
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 9.2e-06 57.0 333 33.6
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 9.2e-06 57.0 78 43.6


User provided reference genes

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