Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-88 329.7 183 100.0
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-87 326.2 183 98.9
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-86 322.8 183 97.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.8e-86 321.6 183 97.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.0e-86 321.2 183 97.3
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.6e-86 320.5 181 97.8
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.0e-76 287.3 183 90.2
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-74 283.1 197 84.8
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-74 283.1 197 84.8
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-74 282.7 201 83.1
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-71 273.1 201 80.6
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 8.1e-44 181.0 207 60.9
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-43 180.3 194 59.8
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.4e-43 179.5 194 60.8
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.9e-38 162.2 202 55.4
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.1e-37 160.6 202 54.0
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.6e-36 155.6 205 53.7
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.4e-35 152.9 212 50.9
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 2.4e-35 152.9 212 50.9
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.8e-33 145.6 205 52.2
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 2.4e-32 142.9 191 51.3
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.6e-31 140.2 198 54.5
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 3.0e-30 136.0 201 48.8
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 2.8e-28 129.4 202 48.0
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.1e-27 127.5 202 47.0
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.1e-27 125.9 202 47.0
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 3.1e-27 125.9 202 47.0
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 3.1e-27 125.9 197 49.2
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 6.9e-27 124.8 205 45.9
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 5.8e-26 121.7 205 44.4
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 6.4e-25 118.2 198 45.5
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 6.4e-25 118.2 205 43.4
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.9e-24 116.7 205 42.4
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 4.2e-24 115.5 205 42.9
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 7.1e-24 114.8 203 43.3
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.2e-23 114.0 205 41.5
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.1e-23 113.2 191 45.0
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 2.1e-23 113.2 204 43.1
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 3.5e-23 112.5 210 41.9
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.3e-22 110.5 195 45.1
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.8e-22 110.2 199 42.7
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 3.0e-22 109.4 200 43.5
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.9e-22 109.0 199 42.2
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.1e-21 107.5 210 44.8
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.9e-21 106.7 199 42.2
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.3e-21 105.5 197 42.1
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 9.6e-21 104.4 200 40.5
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.6e-20 103.6 198 41.4
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.6e-20 103.6 194 43.8
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.6e-20 103.6 200 42.0
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 2.1e-20 103.2 198 42.4
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.1e-20 103.2 194 43.8
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.1e-19 100.9 210 40.5
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.1e-19 100.9 195 43.1
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.8e-19 100.1 206 41.7
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 2.4e-19 99.8 128 50.0
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 9.0e-19 97.8 196 42.9
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 9.0e-19 97.8 194 41.2
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.2e-18 97.4 189 40.2
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 5.8e-18 95.1 208 44.2
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 7.6e-18 94.7 197 42.6
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.0e-17 94.4 202 41.6
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.3e-17 94.0 195 41.0
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.3e-17 94.0 201 39.8
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.7e-17 93.6 196 41.3
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.8e-17 92.4 203 41.4
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.9e-17 92.0 201 38.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 6.5e-17 91.7 210 41.9
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.1e-16 90.9 199 38.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.1e-16 90.9 199 38.2
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 3.2e-16 89.4 196 38.3
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 4.2e-16 89.0 196 40.3
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 7.1e-16 88.2 202 41.6
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 7.1e-16 88.2 201 38.8
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 9.3e-16 87.8 194 41.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.2e-15 87.4 193 41.5
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.1e-15 86.7 198 37.4
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 3.5e-15 85.9 166 40.4
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.5e-15 85.9 212 42.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 4.6e-15 85.5 196 37.8
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.6e-15 85.5 203 37.4
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 6.0e-15 85.1 195 39.5
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 6.0e-15 85.1 203 37.9
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 7.9e-15 84.7 201 36.8
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.0e-14 84.3 205 36.1
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.3e-14 84.0 206 35.9
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 2.3e-14 83.2 213 39.0
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 3.0e-14 82.8 201 39.3
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.7e-14 81.6 203 36.0
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.9e-13 80.1 156 37.8
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.3e-13 79.3 196 38.3
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 3.3e-13 79.3 132 44.7
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 5.7e-13 78.6 154 39.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.3e-12 77.4 174 39.7
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.3e-12 77.4 192 38.5
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.3e-12 77.4 202 35.6
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.6e-12 77.0 199 35.7
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.2e-12 76.6 194 35.1
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 4.8e-12 75.5 217 35.0
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 6.3e-12 75.1 198 35.9
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.4e-11 73.9 202 36.6
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 5.3e-11 72.0 204 36.3
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 6.9e-11 71.6 198 35.4
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.6e-10 69.7 197 35.0
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 3.4e-10 69.3 155 36.8
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 4.5e-10 68.9 193 36.3
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 4.5e-10 68.9 193 36.3
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 5.9e-10 68.6 199 39.2
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 5.9e-10 68.6 199 37.2
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 5.9e-10 68.6 195 38.5
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 7.7e-10 68.2 193 35.8
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.0e-09 67.8 197 37.6
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.0e-09 67.8 197 37.6
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.0e-09 67.8 140 38.6
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.2e-09 66.6 197 38.6
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.2e-09 66.6 200 36.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 2.2e-09 66.6 203 36.9
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 6.5e-09 65.1 118 42.4
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.1e-08 64.3 198 38.4
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 1.1e-08 64.3 204 37.7
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.4e-08 63.9 199 35.2
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.4e-08 63.9 133 39.1
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.4e-08 63.9 213 34.3
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.9e-08 63.5 203 34.5
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 2.5e-08 63.2 205 32.7
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 4.2e-08 62.4 115 40.0
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 5.5e-08 62.0 198 37.4
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 5.5e-08 62.0 188 34.6
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 7.2e-08 61.6 188 34.6
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.2e-07 60.8 201 34.8
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-06 57.4 197 31.0
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 2.3e-06 56.6 135 34.8
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 6.7e-06 55.1 63 46.0


User provided reference genes

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