Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.0e-43 178.7 89 100.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 7.4e-43 176.8 89 98.9
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 7.7e-16 87.0 41 97.6
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 7.7e-16 87.0 41 97.6
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 7.7e-16 87.0 41 97.6
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 2.3e-15 85.5 41 95.1
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.9e-15 85.1 41 92.7
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.9e-15 85.1 43 88.4
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.9e-15 85.1 43 88.4
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 3.8e-15 84.7 44 84.1
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 5.0e-15 84.3 41 92.7
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 5.0e-15 84.3 41 92.7
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 6.6e-15 84.0 41 95.1
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 6.6e-15 84.0 41 95.1
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 6.6e-15 84.0 41 95.1
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.6e-15 84.0 41 95.1
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 6.6e-15 84.0 41 95.1
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 6.6e-15 84.0 41 95.1
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 6.6e-15 84.0 41 95.1
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 1.5e-14 82.8 41 92.7
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.5e-14 82.8 41 92.7
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.5e-14 82.8 41 92.7
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 1.9e-14 82.4 41 92.7
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.9e-14 82.4 41 92.7
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 1.9e-14 82.4 43 86.0
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.9e-14 82.4 41 90.2
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.9e-14 82.4 44 81.8
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.5e-14 82.0 43 83.7
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 2.5e-14 82.0 43 83.7
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.5e-14 82.0 40 92.5
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 2.5e-14 82.0 41 92.7
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 2.5e-14 82.0 41 92.7
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 2.5e-14 82.0 41 92.7
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 2.5e-14 82.0 43 86.0
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 3.3e-14 81.6 41 90.2
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 3.3e-14 81.6 41 90.2
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 4.2e-14 81.3 41 90.2
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 4.2e-14 81.3 40 92.5
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.2e-14 81.3 40 92.5
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 4.2e-14 81.3 40 92.5
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 4.2e-14 81.3 40 92.5
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 4.2e-14 81.3 40 92.5
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 4.2e-14 81.3 40 92.5
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 4.2e-14 81.3 40 92.5
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 4.2e-14 81.3 40 92.5
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 5.5e-14 80.9 42 85.7
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 5.5e-14 80.9 43 86.0
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 5.5e-14 80.9 41 90.2
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 5.5e-14 80.9 41 90.2
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 7.2e-14 80.5 43 81.4
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.2e-14 80.5 41 87.8
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.2e-14 80.5 41 87.8
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.2e-14 80.5 41 87.8
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 7.2e-14 80.5 41 90.2
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 7.2e-14 80.5 40 90.0
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 9.5e-14 80.1 41 90.2
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 9.5e-14 80.1 40 90.0
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 9.5e-14 80.1 43 83.7
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 9.5e-14 80.1 43 83.7
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 9.5e-14 80.1 43 83.7
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 9.5e-14 80.1 40 90.0
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 9.5e-14 80.1 43 83.7
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 1.2e-13 79.7 41 87.8
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 1.2e-13 79.7 40 90.0
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 1.2e-13 79.7 41 87.8
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.2e-13 79.7 40 90.0
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.6e-13 79.3 40 90.0
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 2.1e-13 79.0 41 82.9
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.1e-13 79.0 42 85.7
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 2.1e-13 79.0 41 87.8
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 2.1e-13 79.0 41 87.8
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 2.8e-13 78.6 41 85.4
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 2.8e-13 78.6 40 87.5
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 2.8e-13 78.6 41 87.8
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 2.8e-13 78.6 42 83.3
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 3.6e-13 78.2 40 90.0
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 3.6e-13 78.2 43 83.7
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.7e-13 77.8 39 92.3
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.7e-13 77.8 39 92.3
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 4.7e-13 77.8 39 92.3
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 6.1e-13 77.4 42 81.0
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 8.0e-13 77.0 42 81.0
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 8.0e-13 77.0 40 87.5
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 1.0e-12 76.6 42 83.3
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 1.0e-12 76.6 42 83.3
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.0e-12 76.6 40 85.0
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.0e-12 76.6 42 83.3
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.0e-12 76.6 42 83.3
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.4e-12 76.3 40 82.5
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-12 76.3 40 82.5
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-12 76.3 40 82.5
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-12 76.3 40 82.5
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-12 76.3 40 82.5
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.4e-12 76.3 40 85.0
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.4e-12 76.3 40 85.0
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.8e-12 75.9 42 78.6
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.8e-12 75.9 41 85.4
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 1.8e-12 75.9 42 78.6
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 2.3e-12 75.5 41 80.5
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 2.3e-12 75.5 42 76.2
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 2.3e-12 75.5 40 80.0
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 3.0e-12 75.1 42 76.2
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 4.0e-12 74.7 42 78.6
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 5.2e-12 74.3 40 82.5
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 6.8e-12 73.9 40 80.0
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 6.8e-12 73.9 40 80.0
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 6.8e-12 73.9 40 80.0
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 6.8e-12 73.9 40 80.0
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 6.8e-12 73.9 40 80.0
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 6.8e-12 73.9 40 80.0
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 8.9e-12 73.6 43 76.7
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.2e-11 73.2 40 80.0
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.2e-11 73.2 40 80.0
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 1.2e-11 73.2 40 80.0
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 1.2e-11 73.2 40 80.0
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.2e-11 73.2 42 76.2
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 1.5e-11 72.8 40 80.0
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 1.5e-11 72.8 40 77.5
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.0e-11 72.4 44 68.2
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 3.4e-11 71.6 40 80.0
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 3.4e-11 71.6 42 73.8
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 3.4e-11 71.6 40 80.0
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 3.4e-11 71.6 42 73.8
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 3.4e-11 71.6 40 80.0
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 3.4e-11 71.6 42 73.8
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 3.4e-11 71.6 40 77.5
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 4.4e-11 71.2 42 73.8
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 4.4e-11 71.2 41 78.0
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 4.4e-11 71.2 41 78.0
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.4e-11 71.2 41 78.0
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 5.7e-11 70.9 40 77.5
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 7.5e-11 70.5 40 77.5
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 7.5e-11 70.5 40 77.5
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 1.7e-10 69.3 43 74.4
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 1.7e-10 69.3 40 75.0
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 1.7e-10 69.3 42 71.4
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 2.2e-10 68.9 40 77.5
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 3.7e-10 68.2 40 70.0
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.4e-09 65.5 41 68.3
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 5.4e-09 64.3 44 68.2
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 4.5e-08 61.2 32 81.2
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.0e-07 60.1 40 70.0
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 8.6e-07 57.0 39 61.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 8.6e-07 57.0 39 61.5


User provided reference genes

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