Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.1e-258 895.2 457 100.0
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.8e-256 886.3 457 99.1
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 2.4e-198 695.7 457 80.3
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 3.5e-197 691.8 457 79.4
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 4.0e-193 678.3 462 78.8
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 7.1e-190 667.5 463 77.3
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 2.7e-189 665.6 459 75.8
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 6.0e-189 664.5 402 82.8
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 6.7e-188 661.0 459 75.6
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 8.7e-188 660.6 463 76.9
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 1.1e-187 660.2 459 74.7
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 1.5e-187 659.8 462 74.7
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 1.3e-186 656.8 463 76.7
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 1.3e-186 656.8 458 74.9
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 4.8e-186 654.8 439 77.2
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 8.1e-186 654.1 458 75.8
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 3.1e-185 652.1 467 75.4
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 4.0e-185 651.7 477 74.4
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 6.9e-185 651.0 457 75.5
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 2.9e-183 645.6 475 73.7
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 3.8e-183 645.2 465 74.0
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 3.8e-183 645.2 458 75.3
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 6.5e-183 644.4 457 75.9
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 4.2e-182 641.7 460 73.7
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 9.3e-182 640.6 467 74.1
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 1.3e-180 636.7 461 74.4
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 1.8e-180 636.3 464 73.7
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 1.1e-179 633.6 460 73.7
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 3.3e-179 632.1 358 86.9
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 4.3e-179 631.7 461 73.5
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 5.7e-179 631.3 461 74.0
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 5.7e-179 631.3 461 73.8
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 9.6e-179 630.6 388 79.6
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 2.8e-178 629.0 457 71.1
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 1.4e-177 626.7 460 71.3
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 1.4e-177 626.7 462 72.3
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 1.4e-177 626.7 467 70.9
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 2.4e-177 625.9 461 70.3
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 3.1e-177 625.5 370 84.3
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 1.2e-176 623.6 452 72.1
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 1.5e-176 623.2 460 70.9
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 2.0e-176 622.9 470 70.0
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 2.6e-176 622.5 461 71.1
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 3.4e-176 622.1 442 71.9
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 5.9e-176 621.3 406 75.4
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 1.7e-175 619.8 398 78.6
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 2.9e-175 619.0 457 70.9
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 3.8e-175 618.6 459 71.5
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 1.1e-174 617.1 456 72.4
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 1.1e-174 617.1 436 73.6
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 1.1e-174 617.1 464 72.2
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 1.4e-174 616.7 453 72.0
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 3.2e-174 615.5 456 71.9
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 5.5e-174 614.8 398 76.6
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 5.5e-174 614.8 456 71.9
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 5.5e-174 614.8 467 73.2
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 7.2e-174 614.4 418 74.2
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 7.2e-174 614.4 456 71.7
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 1.6e-173 613.2 370 81.9
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 6.1e-173 611.3 417 75.5
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 2.3e-172 609.4 467 69.2
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 1.5e-171 606.7 463 68.9
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 4.3e-171 605.1 463 70.8
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 4.3e-171 605.1 466 70.4
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 1.6e-170 603.2 487 66.9
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 4.8e-170 601.7 458 68.3
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 6.3e-170 601.3 455 70.1
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 6.3e-170 601.3 440 70.5
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 8.2e-170 600.9 454 70.5
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 2.0e-168 596.3 451 69.8
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.6e-168 595.9 457 70.0
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 7.7e-168 594.3 370 79.7
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 2.9e-167 592.4 461 68.5
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 5.0e-167 591.7 457 68.7
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 5.0e-167 591.7 459 69.5
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 5.5e-166 588.2 457 69.4
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 5.5e-166 588.2 465 67.3
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 7.2e-166 587.8 462 68.6
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 3.6e-165 585.5 438 68.0
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 1.8e-164 583.2 420 69.5
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 2.3e-164 582.8 448 68.3
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 5.1e-164 581.6 442 69.0
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 1.5e-163 580.1 461 66.6
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 1.7e-162 576.6 465 65.6
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 1.7e-162 576.6 380 75.5
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 2.2e-162 576.2 369 76.2
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 2.8e-162 575.9 444 67.3
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 8.2e-162 574.3 464 67.5
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 1.1e-161 573.9 392 71.9
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 1.7e-159 566.6 456 64.7
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 8.5e-159 564.3 459 64.1
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 4.7e-157 558.5 469 64.0
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 4.7e-157 558.5 469 64.0
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 1.4e-156 557.0 460 63.5
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 2.3e-156 556.2 460 63.3
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 2.3e-156 556.2 460 63.3
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 5.2e-156 555.1 467 66.4
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 3.1e-153 545.8 466 61.2
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.8e-148 530.0 305 85.9
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.3e-143 513.8 335 77.9
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 6.1e-141 505.0 394 64.2
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 2.0e-139 500.0 391 64.7
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 9.8e-139 497.7 394 69.0
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 6.0e-112 408.7 430 53.7
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 2.0e-107 393.7 374 53.7
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 2.9e-106 389.8 397 51.9
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 2.7e-104 383.3 363 53.4
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 6.0e-104 382.1 248 76.6
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 1.2e-99 367.9 382 49.7
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 1.3e-95 354.4 385 50.9
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.6e-91 340.1 435 44.4
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.1e-78 298.1 338 47.0
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 9.6e-78 295.0 381 46.7
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.7e-77 293.1 380 43.7
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.0e-60 235.3 132 94.7
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.9e-54 217.6 123 93.5
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 2.2e-53 214.2 131 74.8
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 1.8e-47 194.5 315 43.8
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 8.5e-42 175.6 104 82.7
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.3e-37 161.8 83 97.6
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 6.3e-37 159.5 83 96.4
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 6.3e-37 159.5 91 80.2
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.3e-31 141.0 72 94.4
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 2.6e-30 137.5 89 79.8
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 4.5e-27 126.7 358 31.0
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 4.5e-27 126.7 259 34.0
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 3.8e-26 123.6 83 75.9
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 3.4e-22 110.5 139 52.5
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 1.7e-21 108.2 377 28.4
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 5.4e-20 103.2 72 76.4
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 5.7e-14 83.2 122 42.6
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 1.5e-06 58.5 97 42.3


User provided reference genes

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