Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009054 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 8.2e-76 287.0 144 100.0
CSS0038248 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D033897 6.1e-71 270.8 144 95.8
CSS0018471 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D006344 5.7e-61 237.7 132 93.2
vmacro01067 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 3.1e-46 188.7 132 75.0
vmacro14060 Vaccinium macrocarpon HOM05D000070 ORTHO05D006344 2.0e-45 186.0 132 74.2
CSS0028505 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 4.7e-39 164.9 109 78.9
Lj6C778T15 Lonicera japonica HOM05D000070 ORTHO05D006344 2.0e-37 159.5 131 63.4
Nitab4.5_0007061g0080 Nicotiana tabacum HOM05D000070 ORTHO05D006344 3.7e-36 155.2 132 62.1
QL03p074004 Quercus lobata HOM05D000070 ORTHO05D006344 1.4e-35 153.3 135 60.7
QL03p074454 Quercus lobata HOM05D000070 ORTHO05D006344 1.4e-35 153.3 135 60.7
Peaxi162Scf00175g00320 Petunia axillaris HOM05D000070 ORTHO05D006344 2.4e-35 152.5 132 61.4
Thecc.02G329400 Theobroma cacao HOM05D000070 ORTHO05D006344 2.4e-35 152.5 133 61.7
Nitab4.5_0000231g0160 Nicotiana tabacum HOM05D000070 ORTHO05D006344 3.2e-35 152.1 132 61.4
TAR371G0409 Trochodendron aralioides HOM05D000070 ORTHO05D006344 5.4e-35 151.4 133 58.6
Cc03_g11280 Coffea canephora HOM05D000070 ORTHO05D033897 9.2e-35 150.6 131 59.5
QL03p074523 Quercus lobata HOM05D000070 ORTHO05D006344 1.2e-34 150.2 132 61.4
Cc03_g11290 Coffea canephora HOM05D000070 ORTHO05D006344 3.5e-34 148.7 131 58.8
CAN.G707.5 Capsicum annuum HOM05D000070 ORTHO05D006344 4.6e-34 148.3 135 61.5
COL.COLO4_27870 Corchorus olitorius HOM05D000070 ORTHO05D006344 3.9e-33 145.2 133 59.4
PGSC0003DMG400028368 Solanum tuberosum HOM05D000070 ORTHO05D006344 8.6e-33 144.1 133 60.2
Atru.chr11.1617 Acer truncatum HOM05D000070 ORTHO05D006344 2.5e-32 142.5 135 60.0
MSTRG.13451 Avicennia marina HOM05D000070 ORTHO05D006344 5.6e-32 141.4 132 58.3
Ciclev10031132m.g Citrus clementina HOM05D000070 ORTHO05D006344 7.3e-32 141.0 133 57.9
Rhsim02G0237900 Rhododendron simsii HOM05D000070 ORTHO05D006344 7.3e-32 141.0 90 80.0
Solyc05g012190.3 Solanum lycopersicum HOM05D000070 ORTHO05D006344 7.3e-32 141.0 133 60.2
Duzib251G0829 Durio zibethinus HOM05D000070 ORTHO05D006344 9.5e-32 140.6 140 56.4
QL03p073969 Quercus lobata HOM05D000070 ORTHO05D006344 9.5e-32 140.6 134 57.5
Rhsim02G0238200 Rhododendron simsii HOM05D000070 ORTHO05D006344 9.5e-32 140.6 90 78.9
DCAR_030045 Daucus carota HOM05D000070 ORTHO05D006344 1.2e-31 140.2 133 56.4
GSVIVG01034378001 Vitis vinifera HOM05D000070 ORTHO05D000722 1.2e-31 140.2 118 66.9
Potri.001G128700 Populus trichocarpa HOM05D000070 ORTHO05D006344 3.6e-31 138.7 131 59.5
Sopen05g007020 Solanum pennellii HOM05D000070 ORTHO05D006344 3.6e-31 138.7 133 59.4
Manes.04G050400 Manihot esculenta HOM05D000070 ORTHO05D006344 8.1e-31 137.5 131 55.7
Nn4g23451 Nelumbo nucifera HOM05D000070 ORTHO05D006344 8.1e-31 137.5 133 54.1
QL03p073983 Quercus lobata HOM05D000070 ORTHO05D006344 8.1e-31 137.5 135 55.6
Sabra01G0099000 Salix brachista HOM05D000070 ORTHO05D006344 3.1e-30 135.6 129 58.9
CiPaw.06G092600 Carya illinoinensis HOM05D000070 ORTHO05D006344 4.0e-30 135.2 135 54.8
CANSAT11G2528 Cannabis sativa HOM05D000070 ORTHO05D006344 6.8e-30 134.4 137 56.2
MELO3C012157.2 Cucumis melo HOM05D000070 ORTHO05D006344 1.2e-29 133.7 133 54.1
Cc11_g11890 Coffea canephora HOM05D000070 ORTHO05D006344 4.4e-29 131.7 110 61.8
CsaV3_5G033370 Cucumis sativus L. HOM05D000070 ORTHO05D006344 1.7e-28 129.8 133 52.6
Gorai.001G006200 Gossypium raimondii HOM05D000070 ORTHO05D006344 1.7e-28 129.8 139 53.2
Gohir.D07G006600 Gossypium hirsutum HOM05D000070 ORTHO05D006344 2.2e-28 129.4 139 52.5
Cpa.g.sc1.136 Carica papaya HOM05D000070 ORTHO05D006344 3.8e-28 128.6 133 52.6
Gohir.A07G005400 Gossypium hirsutum HOM05D000070 ORTHO05D006344 6.4e-28 127.9 139 51.8
Glyma.02G118800 Glycine max HOM05D000070 ORTHO05D006344 5.4e-27 124.8 139 51.1
ClCG05G023650 Citrullus lanatus HOM05D000070 ORTHO05D006344 9.2e-27 124.0 133 51.9
Phvul.003G041700 Phaseolus vulgaris HOM05D000070 ORTHO05D006344 9.2e-27 124.0 136 52.2
Hund05835 Selenicereus undatus HOM05D000070 ORTHO05D006344 1.2e-26 123.6 118 58.5
Ah.03g138860 Amaranthus hybridus HOM05D000070 ORTHO05D006344 2.7e-26 122.5 137 54.0
Aqoxy2G01115 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 3.5e-26 122.1 137 54.7
Sed0010273 Sechium edule HOM05D000070 ORTHO05D006344 3.5e-26 122.1 133 51.9
Aqoxy1G00608 Aquilegia oxysepala HOM05D000070 ORTHO05D006344 4.6e-26 121.7 132 56.1
SalBow2G1167 Salvia bowleyana HOM05D000113 ORTHO05D006344 1.0e-25 120.6 125 50.4
TAR365G1030 Trochodendron aralioides HOM05D000070 ORTHO05D006344 1.0e-25 120.6 90 66.7
Actinidia33245 Actinidia chinensis HOM05D002141 ORTHO05D002119 1.7e-25 119.8 110 62.7
TWI31G0249 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 1.7e-25 119.8 117 56.4
TWI31G0934 Tripterygium wilfordii HOM05D000070 ORTHO05D006344 1.7e-25 119.8 117 56.4
arahy.Tifrunner.gnm1.ann1.9AW2B2 Arachis hypogaea HOM05D000070 ORTHO05D006344 3.0e-25 119.0 128 53.1
Lsat_1_v5_gn_4_11741 Lactuca sativa HOM05D000070 ORTHO05D006344 3.9e-25 118.6 129 51.9
Migut.J01072 Erythranthe guttata HOM05D000070 ORTHO05D006344 5.1e-25 118.2 121 53.7
Lj1g0014852 Lotus japonicus HOM05D000070 ORTHO05D006344 5.1e-25 118.2 130 52.3
Haze_11898 Corylus avellana HOM05D000070 ORTHO05D006344 6.6e-25 117.9 106 60.4
TAR371G0020 Trochodendron aralioides HOM05D000070 ORTHO05D006344 6.6e-25 117.9 83 71.1
EL10Ac6g15010 Beta vulgaris HOM05D000070 ORTHO05D006344 8.7e-25 117.5 133 51.1
AUR62003090 Chenopodium quinoa HOM05D000070 ORTHO05D006344 1.9e-24 116.3 128 51.6
arahy.Tifrunner.gnm1.ann1.Z90ZKN Arachis hypogaea HOM05D000070 ORTHO05D006344 3.3e-24 115.5 128 52.3
ECA234G0905 Erigeron canadensis HOM05D000070 ORTHO05D006344 3.3e-24 115.5 103 61.2
AUR62007907 Chenopodium quinoa HOM05D000070 ORTHO05D006344 1.2e-23 113.6 127 50.4
Lalb_Chr17g0341241 Lupinus albus HOM05D000070 ORTHO05D006344 1.6e-23 113.2 133 51.9
Cc00_g25790 Coffea canephora HOM05D000070 ORTHO05D006344 2.1e-23 112.8 70 78.6
Thhalv10003859m.g Eutrema salsugineum HOM05D000070 ORTHO05D006344 2.1e-23 112.8 124 50.8
Cfa008871 Carpinus fangiana HOM05D000070 ORTHO05D006344 4.7e-23 111.7 105 59.0
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 1.1e-22 110.5 133 47.4
Carub.0005s0280 Capsella rubella HOM05D000070 ORTHO05D006344 1.1e-22 110.5 122 51.6
Sp2g14350 Schrenkiella parvula HOM05D000070 ORTHO05D006344 5.2e-22 108.2 122 51.6
THA.LOC104801824 Tarenaya hassleriana HOM05D000070 ORTHO05D006344 5.2e-22 108.2 133 48.1
VMungo1215G2913 Vigna mungo HOM05D000070 ORTHO05D006344 5.2e-22 108.2 131 48.1
Ca_08367_v3 Cicer arietinum L. HOM05D000070 ORTHO05D006344 6.9e-22 107.8 79 67.1
PSO017G7094 Papaver somniferum HOM05D000070 ORTHO05D006344 6.9e-22 107.8 112 53.6
PSO478G0742 Papaver somniferum HOM05D000070 ORTHO05D006344 6.9e-22 107.8 113 53.1
PSO478G2435 Papaver somniferum HOM05D000070 ORTHO05D006344 6.9e-22 107.8 113 53.1
MD16G1060100 Malus domestica HOM05D000070 ORTHO05D006344 1.2e-21 107.1 69 75.4
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.0e-21 106.3 122 50.0
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.0e-21 106.3 122 50.0
BolC9t56003H Brassica oleracea HOM05D000070 ORTHO05D006344 2.0e-21 106.3 122 50.0
Prupe.1G288400 Prunus persica HOM05D000070 ORTHO05D006344 2.0e-21 106.3 69 75.4
A09p24520 Brassica napus HOM05D000070 ORTHO05D006344 4.4e-21 105.1 131 48.1
HanXRQChr17g0568381 Helianthus annuus HOM05D000070 ORTHO05D006344 4.4e-21 105.1 114 52.6
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 5.8e-21 104.8 132 49.2
AL5G13450 Arabidopsis lyrata HOM05D000070 ORTHO05D006344 7.6e-21 104.4 122 51.6
AT2G03670 Arabidopsis thaliana HOM05D000070 ORTHO05D006344 7.6e-21 104.4 122 50.8
FAN22G1193 Fragaria x ananassa HOM05D000070 ORTHO05D006344 7.6e-21 104.4 69 72.5
PGR119G0539 Punica granatum HOM05D000070 ORTHO05D006344 7.6e-21 104.4 138 44.9
SGA_v2.0_scaffold257G45707 Striga asiatica HOM05D000070 ORTHO05D006344 1.7e-20 103.2 117 51.3
FvH4_4g29870 Fragaria vesca HOM05D000070 ORTHO05D006344 3.8e-20 102.1 69 71.0
FAN07G2606 Fragaria x ananassa HOM05D000070 ORTHO05D006344 3.8e-20 102.1 69 71.0
FAN12G0985 Fragaria x ananassa HOM05D000070 ORTHO05D006344 3.8e-20 102.1 69 71.0
FAN17G0562 Fragaria x ananassa HOM05D000070 ORTHO05D006344 3.8e-20 102.1 69 71.0
RcHm_v2.0_Chr4g0438121 Rosa chinensis HOM05D000070 ORTHO05D006344 1.9e-19 99.8 69 71.0
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 2.4e-19 99.4 139 44.6
CARHR146000 Cardamine hirsuta HOM05D000070 ORTHO05D006344 4.2e-19 98.6 122 48.4
Medtr7g088980 Medicago truncatula HOM05D000070 ORTHO05D006344 9.3e-19 97.4 74 64.9
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 2.7e-18 95.9 71 67.6
Psat3g081320 Pisum sativum HOM05D000070 ORTHO05D006344 6.0e-18 94.7 76 60.5
MBI19_g41556_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D006344 1.0e-17 94.0 74 60.8
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 3.9e-17 92.0 71 64.8
Eucgr.G02441 Eucalyptus grandis HOM05D000070 ORTHO05D006344 5.1e-17 91.7 71 63.4
ATR0177G056 Amborella trichopoda HOM05D000070 ORTHO05D006344 6.6e-17 91.3 69 63.8
CSS0034873 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D000722 1.1e-16 90.5 53 84.9
TPR.G22677 Trifolium pratense HOM05D000070 ORTHO05D006344 1.9e-16 89.7 73 60.3
Rhsim02G0238000 Rhododendron simsii HOM05D000070 ORTHO05D006344 1.3e-15 87.0 49 83.7
SEGI_05577 Sequoiadendron giganteum HOM05D000070 ORTHO05D006344 6.2e-15 84.7 69 60.9
Zm00001eb425850 Zea mays HOM05D000070 ORTHO05D006344 8.1e-15 84.3 71 57.7
SMO147G0197 Selaginella moellendorffii HOM05D000070 ORTHO05D006344 1.5e-13 80.1 76 56.6
CDE05G0678 Ceratophyllum demersum HOM05D000070 ORTHO05D006344 2.0e-13 79.7 97 43.3
HPP92_006114 Vanilla planifolia HOM05D000070 ORTHO05D006344 2.6e-13 79.3 71 56.3
CSS0040639 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110186 2.2e-12 76.3 41 92.7
CSS0047747 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D110790 2.2e-12 76.3 41 92.7
Medtr7g088850 Medicago truncatula HOM05D000070 ORTHO05D006344 6.4e-12 74.7 69 55.1
Os04g0498800 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D006344 8.4e-12 74.3 74 52.7
CSS0018364 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D113106 1.9e-11 73.2 41 90.2
CBR_g54905 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-11 71.6 70 50.0
Mapoly0149s0015 Marchantia polymorpha HOM05D000070 ORTHO05D006344 2.1e-10 69.7 73 49.3
PRCOL_00005146 Prasinoderma coloniale HOM05D000070 ORTHO05D006344 3.3e-08 62.4 74 43.2
Actinidia28631 Actinidia chinensis HOM05D000070 ORTHO05D006344 4.3e-08 62.0 74 51.4
Pp3c21_20700 Physcomitrium patens HOM05D000070 ORTHO05D006344 7.4e-08 61.2 72 41.7
AagrBONN_evm.TU.Sc2ySwM_362.1946 Anthoceros agrestis HOM05D000070 ORTHO05D006344 1.6e-07 60.1 71 42.3
Cre17.g700300 Chlamydomonas reinhardtii HOM05D000070 ORTHO05D006344 8.1e-07 57.8 74 40.5


User provided reference genes

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