Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009047 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D109769 9.6e-36 152.9 74 100.0
CSS0017076 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 9.9e-33 142.9 74 94.6
CSS0034716 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D112718 4.9e-32 140.6 74 93.2
CSS0002514 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D109754 3.2e-31 137.9 74 93.2
CSS0016115 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D111458 9.3e-31 136.3 74 91.9
CSS0004459 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D110053 4.3e-28 127.5 74 83.8
CSS0040962 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000689 2.7e-14 81.6 70 57.1
CSS0001511 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.8e-13 79.0 84 48.8
CSS0013605 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D009868 3.3e-12 74.7 84 47.6
CSS0017784 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 3.3e-12 74.7 84 46.4
CSS0022261 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 4.3e-12 74.3 82 48.8
CSS0017310 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.6e-12 73.9 84 47.6
CSS0012313 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D009868 7.4e-12 73.6 84 47.6
CSS0009187 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 9.6e-12 73.2 84 47.6
CSS0024661 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.3e-11 72.8 84 45.2
Rhsim04G0061400 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.3e-11 72.8 83 45.8
CSS0046978 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.6e-11 72.4 84 46.4
CSS0002283 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.8e-11 71.6 84 44.0
TWI18G0179 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 8.1e-11 70.1 83 44.6
DCAR_012969 Daucus carota HOM05D000038 ORTHO05D000689 5.3e-10 67.4 83 41.0
vmacro09303 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 6.9e-10 67.0 83 43.4
Rhsim04G0059200 Rhododendron simsii HOM05D000013 ORTHO05D000689 9.0e-10 66.6 84 44.0
Rhsim04G0060400 Rhododendron simsii HOM05D000038 ORTHO05D000689 9.0e-10 66.6 84 44.0
RhsimUnG0197300 Rhododendron simsii HOM05D000038 ORTHO05D000689 9.0e-10 66.6 84 44.0
RhsimUnG0131800 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.2e-09 66.2 84 44.0
Rhsim04G0061000 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.5e-09 65.9 84 42.9
Rhsim04G0061200 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.5e-09 65.9 84 44.0
vmacro09304 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 1.5e-09 65.9 82 43.9
CANSAT64G2175 Cannabis sativa HOM05D000038 ORTHO05D000689 3.4e-09 64.7 83 43.4
RhsimUnG0113300 Rhododendron simsii HOM05D000013 ORTHO05D000689 3.4e-09 64.7 84 42.9
vmacro09301 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 3.4e-09 64.7 83 43.4
CSS0018809 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 4.5e-09 64.3 83 42.2
Lj3g0007077 Lotus japonicus HOM05D000038 ORTHO05D000689 4.5e-09 64.3 83 42.2
Phvul.005G110400 Phaseolus vulgaris HOM05D000038 ORTHO05D000689 5.8e-09 63.9 83 41.0
Rhsim04G0060200 Rhododendron simsii HOM05D000038 ORTHO05D000689 5.8e-09 63.9 84 42.9
Rhsim04G0060500 Rhododendron simsii HOM05D000038 ORTHO05D000689 5.8e-09 63.9 84 42.9
Hma1.2p1_1090F.1_g255780 Hydrangea macrophylla HOM05D000038 ORTHO05D000689 1.0e-08 63.2 83 42.2
Actinidia39295 Actinidia chinensis HOM05D000038 ORTHO05D000689 1.3e-08 62.8 83 39.8
Haze_13038 Corylus avellana HOM05D000013 ORTHO05D000689 1.3e-08 62.8 83 42.2
CSS0028873 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.7e-08 62.4 83 39.8
Haze_13033 Corylus avellana HOM05D000038 ORTHO05D000689 1.7e-08 62.4 83 41.0
CSS0006040 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 82 40.2
CSS0008527 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 82 40.2
CSS0025699 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 39.8
CSS0050341 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 39.8
DCAR_019201 Daucus carota HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 39.8
TWI75G1104 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 41.0
TWI75G1852 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 41.0
CSS0030882 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 3.8e-08 61.2 83 39.8
CSS0022758 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 8.4e-08 60.1 82 39.0
Haze_13031 Corylus avellana HOM05D000013 ORTHO05D000689 8.4e-08 60.1 83 38.6
Glyma.12G104100 Glycine max HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 38.6
QL08p036241 Quercus lobata HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 39.8
Haze_13035 Corylus avellana HOM05D000038 ORTHO05D000689 1.4e-07 59.3 83 41.0
Aqoxy5G03337 Aquilegia oxysepala HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 39.8
Ca_08325_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 39.8
CSS0039385 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.5e-07 58.5 82 37.8
Manes.13G076800 Manihot esculenta HOM05D000038 ORTHO05D000689 2.5e-07 58.5 83 39.8
Potri.013G121000 Populus trichocarpa HOM05D000038 ORTHO05D000689 2.5e-07 58.5 84 39.3
Potri.013G149500 Populus trichocarpa HOM05D000038 ORTHO05D000689 2.5e-07 58.5 84 39.3
VMungo1080G1064 Vigna mungo HOM05D000038 ORTHO05D000689 2.5e-07 58.5 83 38.6
Ca_01552_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 3.2e-07 58.2 83 37.3
Lj3g0010627 Lotus japonicus HOM05D000038 ORTHO05D000689 3.2e-07 58.2 83 37.3
Nitab4.5_0000945g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 3.2e-07 58.2 83 37.3
Sp3g32530 Schrenkiella parvula HOM05D000038 ORTHO05D000689 3.2e-07 58.2 84 40.5
CSS0007750 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 36.1
CSS0028738 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 36.1
Glyma.06G300600 Glycine max HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 38.6
Potri.019G119200 Populus trichocarpa HOM05D000038 ORTHO05D000689 4.2e-07 57.8 84 39.3
CiPaw.03G167100 Carya illinoinensis HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 39.8
Haze_13034 Corylus avellana HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 39.8
Medtr2g089360 Medicago truncatula HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 38.6
Psat5g267480 Pisum sativum HOM05D000038 ORTHO05D000689 5.5e-07 57.4 83 41.0
arahy.Tifrunner.gnm1.ann1.AUSP9T Arachis hypogaea HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 37.3
CiPaw.03G166900 Carya illinoinensis HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 39.8
CiPaw.03G167200 Carya illinoinensis HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 39.8
Nitab4.5_0010290g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 36.1
RcHm_v2.0_Chr2g0161171 Rosa chinensis HOM05D000038 ORTHO05D000689 7.1e-07 57.0 85 43.5
THA.LOC104798387 Tarenaya hassleriana HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 39.8
TAR626G0246 Trochodendron aralioides HOM05D000038 ORTHO05D000689 7.1e-07 57.0 84 41.7
CAN.G640.28 Capsicum annuum HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 34.9
CiPaw.04G121500 Carya illinoinensis HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 38.6
ClCG02G001430 Citrullus lanatus HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 39.8
Ciclev10014281m.g Citrus clementina HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 38.6
CsaV3_7G004020 Cucumis sativus L. HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 37.3
Psat7g202800 Pisum sativum HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 39.8
Sc12g0002650 Simmondsia chinensis HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 38.6
TAR627G0471 Trochodendron aralioides HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 39.8
Thhalv10023125m.g Eutrema salsugineum HOM05D000038 ORTHO05D000689 1.2e-06 56.2 84 40.5
Medtr0280s0040 Medicago truncatula HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 39.8
Sopen07g026780 Solanum pennellii HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 33.7
Ca_01553_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 1.6e-06 55.8 83 37.3
Duzib132G0772 Durio zibethinus HOM05D000038 ORTHO05D000689 1.6e-06 55.8 83 37.3
HanXRQChr15g0479451 Helianthus annuus HOM05D000038 ORTHO05D000689 1.6e-06 55.8 83 36.1
HanXRQChr17g0559701 Helianthus annuus HOM05D000038 ORTHO05D000689 1.6e-06 55.8 83 34.9
Lj3g0022501 Lotus japonicus HOM05D000038 ORTHO05D000689 1.6e-06 55.8 83 38.6
Nn1g03819 Nelumbo nucifera HOM05D000038 ORTHO05D000689 1.6e-06 55.8 83 37.3
Sabra19G0119800 Salix brachista HOM05D000038 ORTHO05D009868 1.6e-06 55.8 101 38.6
CANSAT64G2052 Cannabis sativa HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 36.1
Ca_01551_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 38.6
Gorai.008G151000 Gossypium raimondii HOM05D000038 ORTHO05D000689 2.1e-06 55.5 91 40.7
Phvul.011G109100 Phaseolus vulgaris HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 37.3
Sabra19G0134200 Salix brachista HOM05D000038 ORTHO05D009868 2.1e-06 55.5 101 38.6
Sc21g0002150 Simmondsia chinensis HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 34.9
Solyc07g053220.2 Solanum lycopersicum HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 33.7
arahy.Tifrunner.gnm1.ann1.D2YYPY Arachis hypogaea HOM05D000038 ORTHO05D000689 2.7e-06 55.1 83 36.1
arahy.Tifrunner.gnm1.ann1.M23BVA Arachis hypogaea HOM05D000038 ORTHO05D000689 2.7e-06 55.1 83 36.1
CSS0028698 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.7e-06 55.1 84 40.5
RcHm_v2.0_Chr2g0161191 Rosa chinensis HOM05D000038 ORTHO05D000689 2.7e-06 55.1 85 42.4
PGSC0003DMG400042814 Solanum tuberosum HOM05D000038 ORTHO05D000689 2.7e-06 55.1 83 33.7
TPR.G30082 Trifolium pratense HOM05D000038 ORTHO05D000689 2.7e-06 55.1 83 38.6
AT2G19130 Arabidopsis thaliana HOM05D000038 ORTHO05D000689 3.5e-06 54.7 84 39.3
Carub.0003s3336 Capsella rubella HOM05D000038 ORTHO05D000689 3.5e-06 54.7 85 38.8
Peaxi162Scf00007g00185 Petunia axillaris HOM05D000038 ORTHO05D000689 3.5e-06 54.7 83 34.9
BcaC04g22867 Brassica carinata HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 39.3
A09p12240 Brassica napus HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 39.3
C09p14470 Brassica napus HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 39.3
BolC9t54349H Brassica oleracea HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 39.3
BraA09t36867Z Brassica rapa HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 39.3
CARHR215810 Cardamine hirsuta HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 39.3
HanXRQChr15g0479471 Helianthus annuus HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 33.7
Nn1g06833 Nelumbo nucifera HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 36.1
Psat7g202960 Pisum sativum HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 37.3
PGR042G0040 Punica granatum HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 36.1
Sabra19G0120000 Salix brachista HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 39.3
Sabra19G0134000 Salix brachista HOM05D000038 ORTHO05D000689 4.6e-06 54.3 84 39.3
VMungo1127G0525 Vigna mungo HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 36.1
MSTRG.13298 Avicennia marina HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 38.6
MSTRG.14046 Avicennia marina HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 38.6
AUR62033724 Chenopodium quinoa HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 36.1
Ciclev10014278m.g Citrus clementina HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 37.3
Haze_13039 Corylus avellana HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 38.6
MELO3C018777.2 Cucumis melo HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 36.1
Duzib052G0031 Durio zibethinus HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 37.3
HanXRQChr01g0019951 Helianthus annuus HOM05D000038 ORTHO05D000689 6.0e-06 53.9 65 38.5
PGR042G1332 Punica granatum HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 36.1
Zm00001eb119590 Zea mays HOM05D000038 ORTHO05D009868 6.0e-06 53.9 83 36.1
BcaB07g31621 Brassica carinata HOM05D000038 ORTHO05D000689 7.9e-06 53.5 84 39.3
Thhalv10018192m.g Eutrema salsugineum HOM05D000038 ORTHO05D000689 7.9e-06 53.5 85 37.6
Thecc.02G167400 Theobroma cacao HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 37.3


User provided reference genes

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