Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009045 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.5e-103 379.8 233 100.0
CSS0007174 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.5e-98 363.2 244 84.0
CSS0035692 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 7.3e-90 334.3 244 82.8
CSS0002956 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.2e-87 327.0 244 79.9
CSS0021062 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D033864 1.8e-80 303.1 252 75.0
CSS0029515 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.7e-78 296.6 252 75.4
CSS0045357 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.7e-78 296.6 252 75.4
CSS0048058 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.1e-77 293.9 249 75.5
CSS0018040 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.6e-76 290.0 254 76.8
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.6e-23 113.2 62 93.5
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 5.2e-19 99.0 66 84.8
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 3.3e-18 96.3 65 84.6
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 3.7e-17 92.8 65 81.5
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.3e-17 92.0 65 78.5
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 6.3e-17 92.0 65 81.5
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 1.4e-16 90.9 90 65.6
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.4e-16 90.9 87 59.8
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 1.4e-16 90.9 64 81.2
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 1.8e-16 90.5 89 66.3
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 4.1e-16 89.4 65 78.5
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 9.1e-16 88.2 65 80.0
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.2e-15 87.8 88 62.5
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 2.0e-15 87.0 65 80.0
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.0e-15 87.0 65 78.5
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 3.5e-15 86.3 67 74.6
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 7.7e-15 85.1 89 64.0
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 7.7e-15 85.1 65 76.9
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 7.7e-15 85.1 66 77.3
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 1.0e-14 84.7 95 58.9
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 1.3e-14 84.3 89 62.9
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.3e-14 84.3 66 77.3
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-14 84.0 66 75.8
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 2.2e-14 83.6 65 76.9
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 2.2e-14 83.6 69 75.4
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 2.2e-14 83.6 69 75.4
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.2e-14 83.6 65 73.8
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 2.2e-14 83.6 65 75.4
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 2.2e-14 83.6 66 71.2
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 2.2e-14 83.6 66 71.2
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 2.2e-14 83.6 93 57.0
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 2.9e-14 83.2 64 75.0
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.9e-14 83.2 66 75.8
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 2.9e-14 83.2 66 71.2
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 2.9e-14 83.2 62 77.4
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 3.8e-14 82.8 93 57.0
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 3.8e-14 82.8 65 76.9
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 5.0e-14 82.4 65 73.8
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 6.5e-14 82.0 55 78.2
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 8.5e-14 81.6 66 69.7
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 1.1e-13 81.3 55 81.8
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 1.1e-13 81.3 65 75.4
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 1.1e-13 81.3 55 81.8
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 1.1e-13 81.3 62 77.4
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 1.5e-13 80.9 66 78.8
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 1.5e-13 80.9 68 70.6
Hma1.2p1_0210F.1_g089550 Hydrangea macrophylla HOM05D003827 ORTHO05D004518 1.5e-13 80.9 57 78.9
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 1.5e-13 80.9 90 56.7
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.5e-13 80.9 65 75.4
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 1.9e-13 80.5 65 64.6
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 2.5e-13 80.1 88 54.5
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.5e-13 80.1 89 58.4
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 2.5e-13 80.1 65 72.3
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 3.2e-13 79.7 56 78.6
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 3.2e-13 79.7 65 66.2
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 3.2e-13 79.7 63 77.8
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 4.2e-13 79.3 66 63.6
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 4.2e-13 79.3 70 71.4
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 4.2e-13 79.3 72 68.1
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 5.5e-13 79.0 65 76.9
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 5.5e-13 79.0 54 77.8
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 5.5e-13 79.0 102 47.1
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 5.5e-13 79.0 91 54.9
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 5.5e-13 79.0 65 70.8
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 7.2e-13 78.6 64 78.1
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 7.2e-13 78.6 56 82.1
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 7.2e-13 78.6 66 74.2
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.2e-13 78.6 66 74.2
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.2e-13 78.6 66 74.2
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.2e-13 78.6 66 74.2
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.2e-13 78.6 66 74.2
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 9.4e-13 78.2 55 69.1
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 9.4e-13 78.2 67 68.7
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 9.4e-13 78.2 54 72.2
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 1.2e-12 77.8 55 69.1
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 1.2e-12 77.8 87 54.0
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.2e-12 77.8 89 56.2
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.2e-12 77.8 89 56.2
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 1.2e-12 77.8 90 56.7
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 1.6e-12 77.4 67 62.7
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.6e-12 77.4 70 65.7
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.6e-12 77.4 89 57.3
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 2.1e-12 77.0 65 63.1
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 2.7e-12 76.6 73 64.4
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 2.7e-12 76.6 91 54.9
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.7e-12 76.6 67 71.6
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 3.6e-12 76.3 65 73.8
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 3.6e-12 76.3 85 49.4
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 4.7e-12 75.9 88 56.8
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 4.7e-12 75.9 65 63.1
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 4.7e-12 75.9 66 72.7
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 6.1e-12 75.5 59 71.2
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 6.1e-12 75.5 63 66.7
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 6.1e-12 75.5 88 53.4
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 8.0e-12 75.1 61 73.8
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 1.4e-11 74.3 70 65.7
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 1.4e-11 74.3 89 51.7
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 1.8e-11 73.9 54 75.9
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 2.3e-11 73.6 69 66.7
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 2.3e-11 73.6 69 66.7
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 2.3e-11 73.6 89 53.9
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 3.0e-11 73.2 69 59.4
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 4.0e-11 72.8 61 70.5
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 6.7e-11 72.0 57 75.4
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 8.8e-11 71.6 61 70.5
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 8.8e-11 71.6 56 71.4
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 1.5e-10 70.9 62 66.1
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 1.5e-10 70.9 93 54.8
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 3.3e-10 69.7 54 66.7
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 7.5e-10 68.6 64 60.9
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 1.3e-09 67.8 63 61.9
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 1.7e-09 67.4 57 64.9
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 2.8e-09 66.6 56 69.6
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 3.7e-09 66.2 57 64.9
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 3.7e-09 66.2 68 58.8
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 3.7e-09 66.2 76 59.2
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 3.7e-09 66.2 75 58.7
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 4.8e-09 65.9 56 66.1
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 4.8e-09 65.9 71 59.2
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 6.3e-09 65.5 66 60.6
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 1.1e-08 64.7 57 63.2
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 2.4e-08 63.5 56 62.5
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 7.0e-08 62.0 67 58.2
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 7.0e-08 62.0 57 61.4
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 1.2e-07 61.2 59 59.3
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 1.6e-07 60.8 59 59.3
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 1.6e-07 60.8 59 59.3
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 1.6e-07 60.8 67 58.2
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 2.7e-07 60.1 82 50.0
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 3.5e-07 59.7 82 54.9
Lj2A449T51 Lonicera japonica HOM05D000401 ORTHO05D000252 5.9e-07 58.9 75 52.0
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 7.7e-07 58.5 64 56.2
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 1.3e-06 57.8 61 55.7
Gohir.A05G392150 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-06 57.4 47 72.3
Gohir.D04G024950 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-06 57.4 47 74.5
Gorai.012G027500 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.7e-06 57.4 47 74.5
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 5.0e-06 55.8 55 63.6
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 5.0e-06 55.8 74 52.7


User provided reference genes

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