Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009036 Camellia sinensis var. sinensis HOM05D007306 ORTHO05D009112 6.9e-47 190.3 95 100.0
CSS0040946 Camellia sinensis var. sinensis HOM05D001162 ORTHO05D043281 5.3e-23 110.9 137 52.6
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 8.6e-13 77.0 94 48.9
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 1.5e-12 76.3 94 46.8
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 9.5e-12 73.6 91 42.9
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 1.6e-11 72.8 93 40.9
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 2.8e-11 72.0 94 45.7
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 3.6e-11 71.6 93 44.1
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 6.1e-11 70.9 93 40.9
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 1.4e-10 69.7 94 42.6
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 1.8e-10 69.3 91 41.8
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 2.3e-10 68.9 93 38.7
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 2.3e-10 68.9 93 38.7
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 2.3e-10 68.9 93 38.7
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 2.3e-10 68.9 91 41.8
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 3.0e-10 68.6 93 38.7
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 3.0e-10 68.6 90 42.2
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 5.2e-10 67.8 92 43.5
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 5.2e-10 67.8 94 44.7
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 8.8e-10 67.0 92 40.2
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 8.8e-10 67.0 94 43.6
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 1.2e-09 66.6 91 40.7
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 2.0e-09 65.9 93 40.9
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 2.6e-09 65.5 93 39.8
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 7.5e-09 63.9 94 39.4
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 7.5e-09 63.9 93 40.9
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 9.8e-09 63.5 92 37.0
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 9.8e-09 63.5 93 38.7
CSS0022484 Camellia sinensis var. sinensis HOM05D002311 ORTHO05D009112 1.3e-08 63.2 32 100.0
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.7e-08 62.8 94 38.3
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 1.7e-08 62.8 91 39.6
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 2.2e-08 62.4 92 40.2
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 8.3e-08 60.5 93 41.9
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 8.3e-08 60.5 89 37.1
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 8.3e-08 60.5 89 37.1
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 1.1e-07 60.1 91 37.4
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 1.1e-07 60.1 91 37.4
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 1.1e-07 60.1 96 39.6
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 1.4e-07 59.7 92 39.1
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 1.4e-07 59.7 92 34.8
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 1.4e-07 59.7 97 39.2
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 1.4e-07 59.7 97 40.2
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 1.8e-07 59.3 94 37.2
CSS0009696 Camellia sinensis var. sinensis HOM05D001162 ORTHO05D043281 1.8e-07 59.3 129 37.2
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 2.4e-07 58.9 96 38.5
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 2.4e-07 58.9 88 38.6
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 4.1e-07 58.2 91 34.1
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 9.2e-07 57.0 96 37.5
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 9.2e-07 57.0 96 37.5
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 1.6e-06 56.2 93 37.6
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 2.0e-06 55.8 91 37.4
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.0e-06 55.8 91 37.4
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.0e-06 55.8 91 37.4
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.0e-06 55.8 91 37.4
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 2.0e-06 55.8 91 37.4
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 2.0e-06 55.8 94 34.0
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 3.5e-06 55.1 96 36.5
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 3.5e-06 55.1 96 36.5
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 3.5e-06 55.1 96 36.5
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 4.5e-06 54.7 91 36.3
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 4.5e-06 54.7 91 36.3
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 4.5e-06 54.7 91 33.0
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 7.8e-06 53.9 92 31.5


User provided reference genes

Program Settings