Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008986 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 8.0e-115 417.2 218 100.0
CSS0034126 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 4.3e-76 288.5 176 83.0
CSS0039191 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 1.8e-74 283.1 175 82.3
CSS0016587 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 8.9e-74 280.8 175 80.6
CSS0038578 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 3.9e-69 265.4 181 76.8
vmacro07881 Vaccinium macrocarpon HOM05D001974 ORTHO05D001995 3.4e-65 252.3 175 75.4
Hma1.2p1_1168F.1_g263050 Hydrangea macrophylla HOM05D001974 ORTHO05D001995 1.4e-63 246.9 176 71.0
vmacro07850 Vaccinium macrocarpon HOM05D001974 ORTHO05D001995 1.4e-63 246.9 171 75.4
Hma1.2p1_0057F.1_g031980 Hydrangea macrophylla HOM05D001974 ORTHO05D001995 1.9e-63 246.5 174 71.8
vmacro07880 Vaccinium macrocarpon HOM05D001974 ORTHO05D001995 9.3e-63 244.2 175 72.6
CSS0049093 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 3.3e-60 235.7 138 87.0
Hund23182 Selenicereus undatus HOM05D001974 ORTHO05D001995 2.4e-55 219.5 171 63.2
Hma1.2p1_0081F.1_g042280 Hydrangea macrophylla HOM05D001974 ORTHO05D001995 8.1e-51 204.5 175 65.7
Manes.08G074900 Manihot esculenta HOM05D001974 ORTHO05D001995 1.2e-49 200.7 185 57.8
EL10Ac4g07669 Beta vulgaris HOM05D001974 ORTHO05D001995 2.0e-49 199.9 172 59.3
DCAR_029339 Daucus carota HOM05D001974 ORTHO05D001995 7.6e-49 198.0 178 59.6
EL10Ac4g07670 Beta vulgaris HOM05D001974 ORTHO05D001995 1.0e-48 197.6 173 59.0
CANSAT78G0362 Cannabis sativa HOM05D001974 ORTHO05D001995 1.0e-48 197.6 174 62.1
Manes.08G074000 Manihot esculenta HOM05D001974 ORTHO05D001995 1.9e-47 193.4 185 56.8
CANSAT78G2247 Cannabis sativa HOM05D001974 ORTHO05D001995 3.2e-47 192.6 172 59.3
Manes.08G075525 Manihot esculenta HOM05D001974 ORTHO05D001995 3.2e-47 192.6 185 57.3
EL10Ac4g07652 Beta vulgaris HOM05D001974 ORTHO05D001995 7.1e-47 191.4 172 58.1
Ah.06g182160 Amaranthus hybridus HOM05D001974 ORTHO05D001995 9.3e-47 191.0 172 57.6
Manes.08G075000 Manihot esculenta HOM05D001974 ORTHO05D001995 1.2e-46 190.7 185 56.8
EL10Ac4g07653 Beta vulgaris HOM05D001974 ORTHO05D001995 2.1e-46 189.9 177 55.9
Manes.08G075185 Manihot esculenta HOM05D001974 ORTHO05D001995 2.7e-46 189.5 185 56.8
PSO724G0601 Papaver somniferum HOM05D001974 ORTHO05D001995 1.3e-45 187.2 169 55.6
EL10Ac4g07664 Beta vulgaris HOM05D001974 ORTHO05D001995 2.3e-45 186.4 177 58.8
DCAR_003580 Daucus carota HOM05D001974 ORTHO05D001995 1.9e-44 183.3 178 56.7
DCAR_003584 Daucus carota HOM05D001974 ORTHO05D001995 1.9e-44 183.3 175 55.4
PSO173G0011 Papaver somniferum HOM05D001974 ORTHO05D001995 2.5e-44 183.0 169 55.0
Os03g0403400 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 3.3e-44 182.6 186 51.6
DCAR_003576 Daucus carota HOM05D001974 ORTHO05D001995 4.8e-43 178.7 176 54.5
Os03g0314500 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 6.3e-43 178.3 185 51.9
Manes.09G060824 Manihot esculenta HOM05D001974 ORTHO05D001995 1.4e-42 177.2 185 53.0
PSO729G0178 Papaver somniferum HOM05D001974 ORTHO05D001995 2.4e-42 176.4 180 52.2
CANSAT21G0707 Cannabis sativa HOM05D001974 ORTHO05D001995 6.9e-42 174.9 173 54.9
Os12g0431300 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 9.0e-42 174.5 192 51.0
CANSAT21G2329 Cannabis sativa HOM05D001974 ORTHO05D001995 1.2e-41 174.1 173 54.9
PSO724G0418 Papaver somniferum HOM05D001974 ORTHO05D001995 1.5e-41 173.7 182 52.7
PSO724G0495 Papaver somniferum HOM05D001974 ORTHO05D001995 2.6e-41 172.9 161 52.8
CANSAT21G0298 Cannabis sativa HOM05D001974 ORTHO05D001995 7.6e-41 171.4 173 54.3
DCAR_012095 Daucus carota HOM05D001974 ORTHO05D001995 2.5e-39 166.4 175 53.7
CANSAT78G0831 Cannabis sativa HOM05D001974 ORTHO05D001995 4.2e-39 165.6 207 47.3
CANSAT78G0278 Cannabis sativa HOM05D001974 ORTHO05D001995 5.1e-37 158.7 140 61.4
AUR62006426 Chenopodium quinoa HOM05D001974 ORTHO05D001995 7.4e-36 154.8 136 59.6
Zm00001eb418440 Zea mays HOM05D001974 ORTHO05D001995 9.7e-36 154.5 175 49.1
PSO724G0115 Papaver somniferum HOM05D001974 ORTHO05D001995 6.9e-34 148.3 141 54.6
PSO063G5215 Papaver somniferum HOM05D001974 ORTHO05D001995 1.2e-33 147.5 171 48.0
CANSAT78G0033 Cannabis sativa HOM05D001974 ORTHO05D001995 1.7e-32 143.7 174 47.7
PSO724G0295 Papaver somniferum HOM05D001974 ORTHO05D001995 2.5e-31 139.8 141 53.2
Ah.04g166300 Amaranthus hybridus HOM05D001974 ORTHO05D001995 4.6e-30 135.6 133 53.4
CSS0030240 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 4.6e-30 135.6 156 56.4
AUR62020334 Chenopodium quinoa HOM05D001974 ORTHO05D001995 1.0e-29 134.4 139 53.2
PSO729G0134 Papaver somniferum HOM05D001974 ORTHO05D001995 9.7e-28 127.9 157 46.5
EL10Ac4g07665 Beta vulgaris HOM05D001974 ORTHO05D001995 1.3e-24 117.5 141 48.9
Ah.04g165730 Amaranthus hybridus HOM05D001974 ORTHO05D001995 3.2e-23 112.8 136 47.8
Aa31LG7G5650 Aethionema arabicum HOM05D001974 ORTHO05D001995 8.5e-16 88.2 181 33.7
TWI60G1213 Tripterygium wilfordii HOM05D001974 ORTHO05D001995 2.6e-12 76.6 183 30.1
SEGI_06668 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 3.3e-12 76.3 198 28.8
Manes.18G081400 Manihot esculenta HOM05D001974 ORTHO05D001995 4.4e-12 75.9 154 31.8
COL.COLO4_36247 Corchorus olitorius HOM05D001974 ORTHO05D001995 7.5e-12 75.1 184 28.3
AL1G34840 Arabidopsis lyrata HOM05D001974 ORTHO05D001995 1.3e-11 74.3 182 33.0
Gohir.A02G071800 Gossypium hirsutum HOM05D001974 ORTHO05D001995 1.3e-11 74.3 178 30.3
Sp1g19220 Schrenkiella parvula HOM05D001974 ORTHO05D001995 2.2e-11 73.6 182 32.4
Sed0002798 Sechium edule HOM05D001974 ORTHO05D001995 2.8e-11 73.2 155 32.9
TAR625G0879 Trochodendron aralioides HOM05D001974 ORTHO05D001995 2.8e-11 73.2 179 31.3
Duzib093G2165 Durio zibethinus HOM05D001974 ORTHO05D001995 3.7e-11 72.8 186 29.0
AT1G21680 Arabidopsis thaliana HOM05D001974 ORTHO05D001995 4.8e-11 72.4 183 33.3
Dinv14657 Davidia involucrata HOM05D001974 ORTHO05D001995 4.8e-11 72.4 184 30.4
Gohir.D02G079100 Gossypium hirsutum HOM05D001974 ORTHO05D001995 6.3e-11 72.0 179 30.7
Gorai.005G088400 Gossypium raimondii HOM05D001974 ORTHO05D001995 6.3e-11 72.0 179 30.7
Duzib116G0963 Durio zibethinus HOM05D001974 ORTHO05D001995 8.2e-11 71.6 185 29.2
Potri.002G079900 Populus trichocarpa HOM05D001974 ORTHO05D001995 8.2e-11 71.6 179 31.8
Cpa.g.sc64.135 Carica papaya HOM05D001974 ORTHO05D001995 1.4e-10 70.9 182 31.9
Ciclev10000425m.g Citrus clementina HOM05D001974 ORTHO05D001995 1.4e-10 70.9 191 26.7
BraA06t24868Z Brassica rapa HOM05D001974 ORTHO05D001995 1.8e-10 70.5 182 30.8
CARHR022030 Cardamine hirsuta HOM05D001974 ORTHO05D001995 1.8e-10 70.5 184 32.6
Thecc.08G131200 Theobroma cacao HOM05D001974 ORTHO05D001995 1.8e-10 70.5 184 28.3
TWI34G1097 Tripterygium wilfordii HOM05D001974 ORTHO05D001995 2.4e-10 70.1 181 29.8
BcaC05g26086 Brassica carinata HOM05D001974 ORTHO05D001995 3.1e-10 69.7 183 31.1
C05p20650 Brassica napus HOM05D001974 ORTHO05D001995 3.1e-10 69.7 183 31.1
BolC5t30764H Brassica oleracea HOM05D001974 ORTHO05D001995 3.1e-10 69.7 183 31.1
Sabra02G0062500 Salix brachista HOM05D001974 ORTHO05D001995 3.1e-10 69.7 176 31.8
Manes.18G081200 Manihot esculenta HOM05D001974 ORTHO05D001995 4.1e-10 69.3 164 31.1
THA.LOC104800217 Tarenaya hassleriana HOM05D001974 ORTHO05D001995 4.1e-10 69.3 187 28.9
THA.LOC104813673 Tarenaya hassleriana HOM05D001974 ORTHO05D001995 4.1e-10 69.3 176 30.1
CSS0028375 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 7.0e-10 68.6 184 28.8
Ah.13g073230 Amaranthus hybridus HOM05D001974 ORTHO05D001995 9.1e-10 68.2 173 26.6
BcaB07g32164 Brassica carinata HOM05D001974 ORTHO05D001995 9.1e-10 68.2 181 28.2
A06p17760 Brassica napus HOM05D001974 ORTHO05D001995 9.1e-10 68.2 182 28.6
MELO3C010644.2 Cucumis melo HOM05D001974 ORTHO05D001995 9.1e-10 68.2 188 28.7
Rhsim12G0081400 Rhododendron simsii HOM05D001974 ORTHO05D001995 1.6e-09 67.4 151 33.1
CiPaw.15G033300 Carya illinoinensis HOM05D001974 ORTHO05D001995 2.7e-09 66.6 186 30.6
unitig_8.g3914 Utricularia gibba HOM05D001974 ORTHO05D001995 2.7e-09 66.6 191 28.3
Carub.0001s2111 Capsella rubella HOM05D001974 ORTHO05D001995 4.5e-09 65.9 180 32.2
ECA232G0613 Erigeron canadensis HOM05D001974 ORTHO05D001995 4.5e-09 65.9 184 26.6
PGR044G1896 Punica granatum HOM05D001974 ORTHO05D001995 4.5e-09 65.9 183 29.0
SEGI_38177 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 4.5e-09 65.9 177 28.8
CsaV3_6G034160 Cucumis sativus L. HOM05D001974 ORTHO05D001995 5.9e-09 65.5 154 31.2
DCAR_024514 Daucus carota HOM05D001974 ORTHO05D001995 7.7e-09 65.1 140 30.0
BcaB07g32163 Brassica carinata HOM05D001974 ORTHO05D001995 1.0e-08 64.7 182 28.6
Thhalv10009943m.g Eutrema salsugineum HOM05D001974 ORTHO05D001995 2.2e-08 63.5 185 29.2
ClCG08G005940 Citrullus lanatus HOM05D001974 ORTHO05D001995 2.9e-08 63.2 154 29.2
CSS0009541 Camellia sinensis var. sinensis HOM05D001974 ORTHO05D001995 5.0e-08 62.4 184 27.7
CANSAT25G2198 Cannabis sativa HOM05D001974 ORTHO05D001995 5.0e-08 62.4 187 29.4
Eucgr.F04330 Eucalyptus grandis HOM05D001974 ORTHO05D001995 5.0e-08 62.4 185 27.0
FAN20G0323 Fragaria x ananassa HOM05D001974 ORTHO05D001995 5.0e-08 62.4 175 28.6
FvH4_2g27620 Fragaria vesca HOM05D001974 ORTHO05D001995 8.5e-08 61.6 175 28.6
FAN15G1949 Fragaria x ananassa HOM05D001974 ORTHO05D001995 8.5e-08 61.6 175 28.6
QL09p033082 Quercus lobata HOM05D001974 ORTHO05D001995 8.5e-08 61.6 152 26.3
Mapoly0073s0007 Marchantia polymorpha HOM05D001974 ORTHO05D001995 1.1e-07 61.2 208 27.4
Medtr3g088425 Medicago truncatula HOM05D001974 ORTHO05D001995 1.1e-07 61.2 177 26.0
FAN24G0031 Fragaria x ananassa HOM05D001974 ORTHO05D001995 1.5e-07 60.8 175 28.6
arahy.Tifrunner.gnm1.ann1.IKMM6A Arachis hypogaea HOM05D001974 ORTHO05D001995 1.9e-07 60.5 180 30.0
AUR62023728 Chenopodium quinoa HOM05D001974 ORTHO05D001995 1.9e-07 60.5 191 25.7
Nitab4.5_0006720g0010 Nicotiana tabacum HOM05D001974 ORTHO05D001995 2.5e-07 60.1 176 24.4
Cfa018109 Carpinus fangiana HOM05D001974 ORTHO05D001995 4.2e-07 59.3 184 26.6
Cc10_g12500 Coffea canephora HOM05D001974 ORTHO05D001995 4.2e-07 59.3 193 26.4
Haze_18005 Corylus avellana HOM05D001974 ORTHO05D001995 4.2e-07 59.3 184 27.2
MBI03_g46670_MAGBIO Magnolia biondii HOM05D001974 ORTHO05D001995 4.2e-07 59.3 190 26.8
Migut.C01055 Erythranthe guttata HOM05D001974 ORTHO05D001995 5.5e-07 58.9 183 28.4
Lj7A346T30 Lonicera japonica HOM05D001974 ORTHO05D001995 9.4e-07 58.2 181 28.2
HanXRQChr09g0260321 Helianthus annuus HOM05D001974 ORTHO05D001995 1.2e-06 57.8 175 28.6
SEGI_01346 Sequoiadendron giganteum HOM05D001974 ORTHO05D001995 1.2e-06 57.8 177 28.2
TPR.G13482 Trifolium pratense HOM05D001974 ORTHO05D001995 1.2e-06 57.8 140 33.6
Oeu021881.1 Olea europaea HOM05D001974 ORTHO05D001995 2.1e-06 57.0 176 29.0
vmacro02371 Vaccinium macrocarpon HOM05D001974 ORTHO05D001995 2.1e-06 57.0 183 26.8
Os03g0840200 Oryza sativa ssp. japonica HOM05D001974 ORTHO05D001995 2.7e-06 56.6 193 26.9
SMO133G0023 Selaginella moellendorffii HOM05D001974 ORTHO05D001995 3.6e-06 56.2 207 22.7
AUR62025904 Chenopodium quinoa HOM05D001974 ORTHO05D001995 8.0e-06 55.1 51 58.8
Nn3g21869 Nelumbo nucifera HOM05D001974 ORTHO05D001995 8.0e-06 55.1 173 26.6
Pp3c1_690 Physcomitrium patens HOM05D001974 ORTHO05D001995 8.0e-06 55.1 146 32.2
HPP92_025165 Vanilla planifolia HOM05D001974 ORTHO05D001995 8.0e-06 55.1 189 28.0


User provided reference genes

Program Settings