Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 1.2e-112 409.8 209 100.0
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.0e-107 392.5 207 94.7
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.6e-107 392.1 207 94.7
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 2.6e-107 392.1 207 94.2
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 3.5e-107 391.7 207 94.2
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 3.5e-107 391.7 207 94.2
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 5.9e-107 391.0 207 94.2
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.0e-106 390.2 207 94.2
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.0e-106 390.2 207 94.2
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.3e-106 389.8 207 93.7
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 2.2e-106 389.0 207 93.2
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 2.9e-106 388.7 207 93.2
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.9e-106 388.7 207 93.7
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 3.8e-106 388.3 207 94.2
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 3.8e-106 388.3 207 94.2
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 3.8e-106 388.3 207 93.7
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 5.0e-106 387.9 207 92.8
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 5.0e-106 387.9 206 94.2
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 6.5e-106 387.5 207 92.8
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 6.5e-106 387.5 207 93.7
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.1e-105 386.7 206 93.2
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.1e-105 386.7 206 93.2
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 1.1e-105 386.7 207 92.8
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.1e-105 386.7 207 92.3
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.1e-105 386.7 207 92.8
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.5e-105 385.6 207 93.2
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 2.5e-105 385.6 206 93.2
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 2.5e-105 385.6 207 93.2
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.5e-105 385.6 206 92.7
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 3.2e-105 385.2 207 92.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 4.2e-105 384.8 207 94.2
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.5e-105 384.4 207 92.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 7.2e-105 384.0 207 92.3
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 7.2e-105 384.0 207 91.8
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 7.2e-105 384.0 206 91.7
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 7.2e-105 384.0 207 91.8
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 9.4e-105 383.6 207 92.3
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.2e-104 383.3 207 93.2
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.2e-104 383.3 207 91.8
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 1.6e-104 382.9 210 92.4
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 2.1e-104 382.5 206 92.7
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 2.1e-104 382.5 207 92.3
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 2.1e-104 382.5 207 92.3
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.7e-104 382.1 206 92.7
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 2.7e-104 382.1 206 91.7
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.7e-104 382.1 207 93.2
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 3.6e-104 381.7 206 91.7
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 3.6e-104 381.7 207 91.3
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.6e-104 381.7 207 91.3
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 4.7e-104 381.3 207 91.3
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 8.0e-104 380.6 207 91.3
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.0e-103 380.2 207 91.8
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.0e-103 380.2 212 91.0
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 1.8e-103 379.4 207 91.8
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 1.8e-103 379.4 207 91.8
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 8.8e-103 377.1 206 91.7
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.1e-102 376.7 206 90.3
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 1.1e-102 376.7 207 90.8
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.1e-102 376.7 207 90.3
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.1e-102 376.7 207 90.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.5e-102 376.3 207 90.3
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 2.0e-102 375.9 206 89.8
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.6e-102 375.6 207 91.8
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 2.6e-102 375.6 217 88.0
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 3.3e-102 375.2 209 90.0
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 3.3e-102 375.2 209 89.5
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 3.3e-102 375.2 207 91.3
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 3.3e-102 375.2 207 91.3
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 4.4e-102 374.8 207 91.3
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 5.7e-102 374.4 207 90.3
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 7.4e-102 374.0 207 89.9
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.3e-101 373.2 207 89.9
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.2e-101 372.5 207 88.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.8e-101 371.3 206 88.3
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 6.3e-101 370.9 207 89.4
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 8.2e-101 370.5 207 88.4
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 8.2e-101 370.5 210 88.6
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 8.2e-101 370.5 210 88.6
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 8.2e-101 370.5 207 89.9
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 8.2e-101 370.5 207 91.8
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 205 90.2
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.8e-100 369.4 210 88.1
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 2.4e-100 369.0 210 88.1
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 205 90.2
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 4.1e-100 368.2 210 88.1
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 4.1e-100 368.2 210 88.1
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 7.0e-100 367.5 196 94.9
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 2.6e-99 365.5 207 90.8
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 87.0
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 3.8e-98 361.7 210 86.7
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 8.5e-98 360.5 210 86.7
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.9e-97 359.4 210 85.7
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.9e-97 359.4 207 84.5
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 2.5e-97 359.0 207 84.1
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 3.2e-97 358.6 207 87.9
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 5.5e-97 357.8 210 85.2
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.2e-96 356.7 206 87.4
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.2e-96 356.7 206 87.4
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 2.1e-96 355.9 207 84.5
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.1e-96 355.9 206 87.4
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.0e-94 349.4 206 85.4
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 7.5e-94 347.4 207 87.4
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 4.8e-93 344.7 210 83.3
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 9.1e-92 340.5 177 93.8
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.7e-90 336.3 178 92.7
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 2.2e-90 335.9 178 92.7
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 2.9e-90 335.5 211 84.4
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 7.2e-89 330.9 178 92.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.4e-87 326.6 178 88.2
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 6.8e-87 324.3 210 82.9
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 8.8e-87 323.9 190 85.8
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 9.8e-86 320.5 207 73.9
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 1.7e-85 319.7 178 87.1
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-84 317.0 207 80.7
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.3e-79 299.3 167 87.4
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 6.8e-79 297.7 205 76.1
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.3e-77 293.5 155 92.3
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 1.8e-76 289.7 207 73.9
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 7.0e-76 287.7 154 92.2
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 4.0e-71 271.9 232 65.1
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.2e-67 260.4 202 62.9
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.0e-67 259.6 206 68.0
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.0e-66 257.3 203 61.6
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 2.1e-64 249.6 200 59.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 6.2e-64 248.1 202 62.4
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 4.0e-63 245.4 167 77.2
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.3e-58 230.3 119 94.1
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 1.7e-58 229.9 198 55.6
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 9.5e-57 224.2 133 88.0
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.2e-54 217.2 207 52.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.4e-54 215.7 150 76.0
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 2.4e-52 209.5 148 73.0
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 9.2e-52 207.6 207 53.1
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 6.6e-50 201.4 208 57.2
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 1.6e-48 196.8 197 47.7
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.2e-46 190.7 196 46.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 7.1e-44 181.4 231 43.3
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 6.6e-42 174.9 160 63.1
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 3.3e-41 172.6 207 50.7
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 3.3e-41 172.6 98 85.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 2.1e-35 153.3 206 48.1
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.1e-31 141.0 187 39.6
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.8e-31 140.2 95 77.9
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.1e-31 139.4 74 94.6
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.1e-31 139.4 99 73.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.3e-29 134.0 83 81.9
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.7e-27 126.3 92 70.7
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 1.8e-26 123.6 135 54.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 2.8e-24 116.3 59 86.4
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 5.3e-23 112.1 73 79.5
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 3.4e-22 109.4 60 90.0
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 3.4e-22 109.4 82 67.1
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 2.9e-13 79.7 61 62.3
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 3.9e-10 69.3 62 64.5
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.2e-08 63.5 39 74.4
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 8.2e-08 61.6 38 73.7
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 4.1e-07 59.3 69 55.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 5.9e-06 55.5 137 24.8


User provided reference genes

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