Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008972 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.2e-36 156.0 76 100.0
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 6.6e-32 140.2 73 93.2
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 1.5e-31 139.0 72 93.1
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 1.5e-31 139.0 72 93.1
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 1.5e-31 139.0 73 91.8
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 1.9e-31 138.7 73 90.4
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 1.9e-31 138.7 73 90.4
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 1.9e-31 138.7 73 90.4
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 1.9e-31 138.7 73 90.4
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 1.9e-31 138.7 73 90.4
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 1.9e-31 138.7 73 90.4
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 1.9e-31 138.7 73 90.4
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 2.5e-31 138.3 73 90.4
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 2.5e-31 138.3 73 90.4
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 2.5e-31 138.3 72 91.7
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 3.3e-31 137.9 73 90.4
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 3.3e-31 137.9 73 90.4
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 3.3e-31 137.9 73 90.4
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 3.3e-31 137.9 73 90.4
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 3.3e-31 137.9 73 90.4
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 3.3e-31 137.9 73 90.4
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 3.3e-31 137.9 73 90.4
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 4.3e-31 137.5 73 89.0
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 4.3e-31 137.5 73 89.0
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 4.3e-31 137.5 73 89.0
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 4.3e-31 137.5 72 91.7
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 4.3e-31 137.5 72 91.7
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 4.3e-31 137.5 73 90.4
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 4.3e-31 137.5 73 89.0
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 5.6e-31 137.1 73 89.0
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 5.6e-31 137.1 74 87.8
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 7.3e-31 136.7 72 91.7
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 7.3e-31 136.7 72 91.7
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 7.3e-31 136.7 72 91.7
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 7.3e-31 136.7 72 91.7
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 7.3e-31 136.7 72 91.7
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 7.3e-31 136.7 72 91.7
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 7.3e-31 136.7 73 89.0
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 9.5e-31 136.3 73 87.7
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 9.5e-31 136.3 73 87.7
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 9.5e-31 136.3 73 87.7
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 9.5e-31 136.3 73 87.7
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 9.5e-31 136.3 73 87.7
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 9.5e-31 136.3 73 87.7
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 1.2e-30 136.0 72 90.3
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 1.2e-30 136.0 73 89.0
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 1.2e-30 136.0 73 87.7
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 1.2e-30 136.0 72 90.3
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 1.6e-30 135.6 72 90.3
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 1.6e-30 135.6 72 90.3
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.6e-30 135.6 72 90.3
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 1.6e-30 135.6 72 90.3
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 1.6e-30 135.6 72 90.3
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 1.6e-30 135.6 72 90.3
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 2.1e-30 135.2 73 87.7
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 2.1e-30 135.2 72 90.3
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 2.1e-30 135.2 72 88.9
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 2.8e-30 134.8 72 88.9
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 2.8e-30 134.8 72 87.5
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 2.8e-30 134.8 73 86.3
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 3.6e-30 134.4 72 88.9
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 3.6e-30 134.4 72 88.9
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 4.7e-30 134.0 72 88.9
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 6.2e-30 133.7 72 88.9
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 6.2e-30 133.7 72 87.5
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 86.3
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 8.0e-30 133.3 73 84.9
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 1.1e-29 132.9 73 86.3
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 1.1e-29 132.9 73 84.9
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 1.4e-29 132.5 73 84.9
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 1.4e-29 132.5 73 84.9
VMungo1215G1910 Vigna mungo HOM05D000103 ORTHO05D000049 1.4e-29 132.5 71 87.3
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 1.8e-29 132.1 72 88.9
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 1.8e-29 132.1 72 87.5
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 3.1e-29 131.3 73 83.6
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 4.0e-29 131.0 73 83.6
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 6.8e-29 130.2 72 84.7
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 6.8e-29 130.2 72 86.1
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 1.5e-28 129.0 72 87.5
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 1.5e-28 129.0 73 82.2
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 2.0e-28 128.6 73 82.2
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 2.0e-28 128.6 73 82.2
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 3.4e-28 127.9 73 82.2
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 3.4e-28 127.9 73 82.2
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 3.4e-28 127.9 73 82.2
RcHm_v2.0_Chr5g0003481 Rosa chinensis HOM05D004107 ORTHO05D004738 3.4e-28 127.9 73 82.2
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 4.4e-28 127.5 73 83.6
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 5.8e-28 127.1 75 78.7
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 5.8e-28 127.1 73 82.2
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 1.4e-26 122.5 73 79.5
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 3.2e-26 121.3 73 79.5
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 3.2e-26 121.3 72 80.6
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 4.1e-26 120.9 73 79.5
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 5.4e-26 120.6 73 74.0
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 5.4e-26 120.6 73 79.5
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 7.0e-26 120.2 73 74.0
vmacro09067 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 7.0e-26 120.2 75 76.0
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 2.0e-25 118.6 73 78.1
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 2.0e-25 118.6 73 78.1
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 6.0e-25 117.1 73 75.3
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 7.8e-25 116.7 73 78.1
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 2.3e-24 115.2 68 77.9
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 3.0e-24 114.8 73 75.3
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 6.6e-24 113.6 72 75.0
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 1.9e-23 112.1 73 74.0
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 1.9e-23 112.1 73 69.9
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 1.9e-23 112.1 73 69.9
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 2.5e-23 111.7 73 71.2
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 1.2e-22 109.4 73 71.2
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 1.2e-22 109.4 67 80.6
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 1.5e-20 102.4 73 67.1
A02p25270 Brassica napus HOM05D004107 ORTHO05D004738 2.0e-20 102.1 76 64.5
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 2.0e-20 102.1 73 67.1
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 2.0e-20 102.1 69 69.6
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 3.4e-20 101.3 72 65.3
Psat0s2739g0040 Pisum sativum HOM05D004107 ORTHO05D004738 3.4e-20 101.3 62 74.2
RcHm_v2.0_Chr1g0332851 Rosa chinensis HOM05D004107 ORTHO05D004738 4.4e-20 100.9 58 79.3
RcHm_v2.0_Chr6g0297111 Rosa chinensis HOM05D004107 ORTHO05D004738 4.4e-20 100.9 58 79.3
Actinidia04354 Actinidia chinensis HOM05D004107 ORTHO05D004738 1.3e-19 99.4 74 66.2
CSS0026740 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 2.9e-19 98.2 76 68.4
Atru.chr8.686 Acer truncatum HOM05D004107 ORTHO05D004738 6.4e-19 97.1 55 78.2
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 1.4e-18 95.9 71 62.0
BraA02t07514Z Brassica rapa HOM05D004107 ORTHO05D004738 2.4e-18 95.1 71 63.4
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 2.4e-18 95.1 71 62.0
VMungo1383G1914 Vigna mungo HOM05D004107 ORTHO05D004738 8.6e-16 86.7 74 58.1
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.9e-15 85.5 65 53.8
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 3.3e-15 84.7 62 62.9
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 7.3e-15 83.6 72 54.2
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 7.3e-15 83.6 72 51.4
BcaB05g23711 Brassica carinata HOM05D004107 ORTHO05D004738 2.1e-14 82.0 73 60.3
TAR624G0013 Trochodendron aralioides HOM05D004107 ORTHO05D004738 6.2e-14 80.5 50 70.0
Pp3c25_3020 Physcomitrium patens HOM05D004107 ORTHO05D004738 2.4e-13 78.6 70 47.1
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 2.6e-12 75.1 73 42.5
RcHm_v2.0_Chr5g0003411 Rosa chinensis HOM05D004107 ORTHO05D004738 1.6e-09 65.9 34 88.2


User provided reference genes

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