Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 4.6e-91 337.8 163 100.0
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.1e-83 312.4 163 88.3
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.1e-83 312.4 163 88.3
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.8e-82 309.3 163 87.7
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.3e-80 303.1 163 85.9
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.6e-80 302.8 163 85.9
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 4.8e-80 301.2 163 84.7
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.8e-80 301.2 163 84.7
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 6.2e-80 300.8 163 85.3
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 2.4e-79 298.9 163 84.0
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 1.2e-78 296.6 163 85.3
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 5.8e-78 294.3 163 81.6
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.7e-77 292.7 163 81.0
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.9e-77 292.0 163 81.6
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 4.9e-77 291.2 163 82.2
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 8.4e-77 290.4 163 79.8
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.1e-76 290.0 163 79.8
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 1.4e-76 289.7 162 80.9
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 4.2e-76 288.1 163 77.9
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 5.5e-76 287.7 146 89.0
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 9.3e-76 287.0 163 82.8
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.6e-75 286.2 154 85.7
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.7e-75 285.4 151 85.4
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 3.5e-75 285.0 163 78.5
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 4.6e-75 284.6 154 83.8
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 7.9e-75 283.9 151 85.4
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 1.3e-74 283.1 154 85.1
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.3e-74 283.1 154 84.4
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 3.9e-74 281.6 162 78.4
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 3.9e-74 281.6 153 83.7
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 5.1e-74 281.2 163 79.8
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 6.7e-74 280.8 163 81.0
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 6.7e-74 280.8 162 77.8
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 8.7e-74 280.4 163 77.3
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.9e-73 279.3 163 78.5
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.9e-73 279.3 163 81.0
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.9e-73 279.3 162 80.2
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 3.3e-73 278.5 159 78.6
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 4.3e-73 278.1 163 77.3
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.3e-72 276.6 163 77.9
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.3e-72 276.6 148 85.1
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.3e-72 276.6 148 85.1
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.6e-72 276.2 163 80.4
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 76.1
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 4.8e-72 274.6 163 76.1
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 3.1e-71 271.9 147 84.4
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 3.1e-71 271.9 163 75.5
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 4.1e-71 271.6 163 74.2
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 5.3e-71 271.2 163 77.9
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 6.9e-71 270.8 163 73.6
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 74.2
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 74.2
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 73.6
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.6e-70 268.9 163 76.7
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 76.7
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 4.5e-70 268.1 152 80.9
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 7.7e-70 267.3 163 73.6
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 7.7e-70 267.3 163 73.0
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.0e-69 266.9 163 75.5
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 73.6
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 73.0
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 71.8
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.7e-69 266.2 163 77.3
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 73.6
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.2e-69 265.8 165 76.4
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.2e-69 265.8 165 76.4
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.2e-69 265.8 163 75.5
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 2.9e-69 265.4 165 76.4
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 3.8e-69 265.0 165 76.4
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 5.0e-69 264.6 163 72.4
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 5.0e-69 264.6 163 73.0
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.4e-68 263.1 149 77.2
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 2.5e-68 262.3 163 76.7
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 4.2e-68 261.5 162 73.5
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 7.2e-68 260.8 163 73.6
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 7.2e-68 260.8 165 75.2
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.7e-67 258.8 163 71.8
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.6e-67 258.5 163 74.8
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.6e-67 258.5 142 82.4
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.0e-66 256.9 139 83.5
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 5.1e-66 254.6 157 72.6
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.1e-65 253.4 153 73.9
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.1e-65 253.4 153 73.9
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.5e-65 253.1 148 77.0
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 2.0e-65 252.7 165 72.7
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 4.3e-65 251.5 148 77.7
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 5.7e-65 251.1 165 72.1
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 9.7e-65 250.4 164 72.6
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 2.2e-64 249.2 153 72.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 3.7e-64 248.4 152 72.4
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 4.8e-64 248.1 144 77.1
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 4.8e-64 248.1 144 77.1
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.1e-63 246.9 152 73.7
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.4e-63 246.5 142 78.2
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 6.9e-63 244.2 141 77.3
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 9.1e-63 243.8 146 75.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.5e-62 243.0 165 70.9
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.6e-62 242.3 165 69.7
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 4.5e-62 241.5 165 68.5
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 7.7e-62 240.7 165 69.7
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 1.0e-61 240.4 178 64.0
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 2.2e-61 239.2 163 66.9
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.1e-60 236.9 136 77.2
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 2.5e-60 235.7 144 74.3
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 3.2e-60 235.3 164 65.9
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 9.4e-60 233.8 163 66.3
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.2e-59 233.4 139 75.5
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 1.2e-59 233.4 165 66.7
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 3.6e-59 231.9 143 72.7
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.4e-58 229.9 124 85.5
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 3.9e-58 228.4 160 66.2
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 6.7e-58 227.6 136 75.0
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 6.3e-56 221.1 163 68.7
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 7.0e-55 217.6 143 66.4
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.6e-51 206.5 163 62.0
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 4.7e-51 204.9 109 85.3
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.6e-46 189.1 163 52.8
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.3e-45 186.8 163 52.1
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 6.1e-43 177.9 163 57.1
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.0e-42 175.3 123 64.2
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 9.7e-41 170.6 128 60.9
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.8e-39 166.4 103 73.8
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 1.8e-39 166.4 123 62.6
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 3.5e-38 162.2 137 64.2
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 7.7e-38 161.0 147 54.4
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 8.5e-37 157.5 164 49.4
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.5e-36 156.8 164 48.8
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 4.2e-36 155.2 176 52.8
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 4.2e-36 155.2 123 60.2
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 4.2e-36 155.2 97 74.2
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 5.5e-36 154.8 163 49.7
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 7.2e-36 154.5 176 52.8
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 8.8e-34 147.5 164 48.2
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.3e-32 143.7 165 44.8
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 9.1e-31 137.5 90 72.2
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 3.0e-26 122.5 139 44.6
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.5e-25 120.2 67 85.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 9.8e-17 90.9 62 66.1
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 4.6e-14 82.0 53 69.8
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 3.9e-13 79.0 120 36.7
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 4.3e-12 75.5 62 61.3
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.6e-11 72.4 58 56.9
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 6.8e-10 68.2 48 60.4
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 1.9e-07 60.1 43 65.1
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 5.4e-07 58.5 46 54.3


User provided reference genes

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