Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 0.0e+00 1317.8 671 100.0
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 0.0e+00 1300.8 671 99.1
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 0.0e+00 1108.6 671 82.6
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 0.0e+00 1099.7 671 82.1
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 0.0e+00 1080.9 671 80.6
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 2.0e-302 1042.0 665 79.8
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 3.2e-295 1018.1 648 78.9
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 5.6e-292 1007.3 684 75.4
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 9.8e-289 996.5 672 75.0
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 4.9e-280 967.6 669 73.1
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 2.4e-279 965.3 655 74.5
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 7.1e-279 963.8 643 74.7
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.0e-277 959.9 673 71.5
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.9e-276 955.7 671 71.5
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 1.9e-276 955.7 646 72.8
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 1.4e-274 949.5 671 70.8
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 5.2e-274 947.6 671 71.1
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 7.1e-271 937.2 671 69.7
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 9.2e-271 936.8 702 67.2
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 2.7e-270 935.3 666 69.8
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 1.7e-269 932.6 671 69.2
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 2.3e-269 932.2 667 68.8
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 9.6e-268 926.8 672 67.6
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 3.6e-267 924.9 663 70.1
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 1.8e-266 922.5 671 68.6
DCAR_014158 Daucus carota HOM05D002544 ORTHO05D007856 3.1e-266 921.8 671 68.6
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 3.1e-266 921.8 667 68.5
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 4.0e-266 921.4 671 68.6
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 1.2e-265 919.8 669 67.7
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 2.6e-265 918.7 667 68.2
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 3.4e-265 918.3 669 67.6
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 1.7e-264 916.0 667 69.1
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 2.9e-264 915.2 664 67.6
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 5.4e-263 911.0 668 67.8
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 2.1e-262 909.1 671 69.7
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 1.0e-261 906.7 671 67.7
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 1.3e-261 906.4 671 68.4
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 2.3e-261 905.6 667 68.5
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 1.5e-260 902.9 664 67.8
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 1.5e-260 902.9 650 68.0
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 1.9e-260 902.5 669 67.3
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 3.3e-260 901.7 643 69.4
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 3.3e-260 901.7 667 67.3
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 7.3e-260 900.6 663 67.4
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 7.3e-260 900.6 675 67.1
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 1.3e-259 899.8 672 68.5
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 1.8e-258 896.0 657 66.7
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 4.0e-258 894.8 667 66.9
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 7.6e-257 890.6 689 65.5
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 1.3e-256 889.8 672 66.4
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 6.4e-256 887.5 635 70.4
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 2.4e-255 885.6 693 64.6
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 3.9e-253 878.2 674 66.2
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 2.5e-252 875.5 730 61.9
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 2.5e-252 875.5 671 64.4
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 4.0e-250 868.2 671 64.1
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 3.4e-249 865.1 669 65.0
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 4.9e-248 861.3 737 60.7
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 2.4e-247 859.0 665 64.5
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 2.4e-247 859.0 686 62.5
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 5.5e-247 857.8 667 64.6
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 7.9e-246 854.0 654 64.7
Thecc.10G105700 Theobroma cacao HOM05D002544 ORTHO05D007856 2.3e-245 852.4 581 72.6
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 3.0e-245 852.0 664 64.3
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 5.1e-245 851.3 648 67.1
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 6.7e-245 850.9 668 63.5
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 1.5e-244 849.7 665 63.6
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 7.4e-244 847.4 649 65.0
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.3e-243 846.7 671 65.1
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 2.4e-242 842.4 676 63.2
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 1.7e-240 836.3 668 63.3
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 2.2e-240 835.9 667 63.1
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 1.1e-239 833.6 669 62.6
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 6.0e-238 827.8 699 61.5
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 5.1e-237 824.7 692 60.5
Thhalv10010197m.g Eutrema salsugineum HOM05D002544 ORTHO05D007856 3.3e-236 822.0 634 63.6
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 4.3e-236 821.6 672 62.1
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 8.2e-235 817.4 727 58.6
FAN19G2740 Fragaria x ananassa HOM05D002544 ORTHO05D007856 1.4e-234 816.6 576 70.1
Cc07_g13210 Coffea canephora HOM05D002544 ORTHO05D007856 2.6e-233 812.4 572 69.8
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 1.1e-231 807.0 638 63.9
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 9.4e-231 803.9 738 57.2
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 7.4e-228 794.3 702 59.7
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 1.7e-227 793.1 557 70.9
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 8.2e-227 790.8 673 60.5
Nitab4.5_0006562g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 3.1e-226 788.9 665 61.4
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 2.9e-224 782.3 662 60.4
Os02g0736500 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007856 6.7e-221 771.2 651 60.1
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 8.8e-221 770.8 672 58.6
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 3.7e-219 765.4 579 66.1
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 2.6e-217 759.2 669 58.0
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 2.2e-216 756.1 696 57.0
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.7e-211 738.8 671 59.3
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 1.0e-208 730.7 673 57.1
PGSC0003DMG400013310 Solanum tuberosum HOM05D002544 ORTHO05D007856 7.2e-207 724.5 514 70.2
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 4.0e-197 692.2 670 56.1
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 4.9e-187 658.7 628 55.7
HPP92_026943 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.1e-186 656.0 595 56.6
CARHR162460 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.1e-182 643.3 484 66.5
SMO115G0276 Selaginella moellendorffii HOM05D002544 ORTHO05D007856 4.0e-165 585.9 649 48.1
Mapoly0182s0008 Marchantia polymorpha HOM05D002544 ORTHO05D007856 1.2e-164 584.3 665 46.5
Hma1.2p1_0158F.1_g070020 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 1.1e-157 561.2 352 78.7
AagrBONN_evm.TU.Sc2ySwM_228.3612 Anthoceros agrestis HOM05D002544 ORTHO05D007856 2.3e-136 490.3 709 41.7
QL02p059469 Quercus lobata HOM05D002544 ORTHO05D007856 5.6e-127 459.1 311 73.6
Pp3c25_11440 Physcomitrium patens HOM05D002544 ORTHO05D007856 2.9e-123 446.8 561 45.6
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 1.1e-109 401.7 649 41.9
SEGI_34556 Sequoiadendron giganteum HOM05D002544 ORTHO05D007856 3.1e-93 347.1 310 54.8
Hund13079 Selenicereus undatus HOM05D002544 ORTHO05D007856 9.1e-93 345.5 355 53.0
HPP92_021312 Vanilla planifolia HOM05D002544 ORTHO05D007856 9.1e-77 292.4 239 63.2
Cre06.g294400 Chlamydomonas reinhardtii HOM05D002544 ORTHO05D007856 2.3e-75 287.7 658 32.8
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 3.2e-69 267.3 335 46.6
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 1.7e-51 208.4 178 56.7
CBR_g26303 Chara braunii HOM05D002544 ORTHO05D000002 4.3e-50 203.8 345 35.7
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 1.2e-41 175.6 314 35.4
MCO14G034 Micromonas commoda HOM05D002544 ORTHO05D007856 8.1e-41 172.9 735 26.3
Zm00001eb289130 Zea mays HOM05D002544 ORTHO05D007856 5.6e-34 150.2 137 56.9
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 4.2e-29 134.0 106 65.1
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 3.5e-28 131.0 150 48.7
Zm00001eb340210 Zea mays HOM05D002544 ORTHO05D007856 1.5e-26 125.6 109 59.6
CBR_g26304 Chara braunii HOM05D002544 ORTHO05D007856 2.0e-23 115.2 115 55.7
Hma1.2p1_0594F.1_g185860 Hydrangea macrophylla HOM05D006828 ORTHO05D008312 6.0e-20 103.6 83 61.4
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.3e-19 102.4 100 52.0
Haze_22892 Corylus avellana HOM05D002544 ORTHO05D007856 1.6e-17 95.5 102 47.1
CSS0043407 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 1.5e-15 89.0 42 97.6
CSS0029470 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D033931 3.4e-15 87.8 42 97.6
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 3.4e-15 87.8 71 54.9
HPP92_021313 Vanilla planifolia HOM05D002544 ORTHO05D007856 1.7e-14 85.5 67 56.7
C04p40260 Brassica napus HOM05D002544 ORTHO05D007856 1.1e-13 82.8 62 61.3
BolC4t25605H Brassica oleracea HOM05D002544 ORTHO05D007856 1.1e-13 82.8 62 61.3
FvH4_4g11392 Fragaria vesca HOM05D000005 ORTHO05D000012 3.2e-13 81.3 50 72.0
FAN02G2717 Fragaria x ananassa HOM05D002544 ORTHO05D007856 3.2e-13 81.3 50 72.0
FAN12G0356 Fragaria x ananassa HOM05D002544 ORTHO05D007856 9.3e-13 79.7 50 70.0
FAN02G1722 Fragaria x ananassa HOM05D002544 ORTHO05D007856 6.0e-12 77.0 50 70.0
Gohir.A10G100500 Gossypium hirsutum HOM05D002544 ORTHO05D033931 1.6e-09 68.9 42 73.8
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 2.4e-08 65.1 37 75.7
SGA_v2.0_scaffold17G07933 Striga asiatica HOM05D002544 ORTHO05D399483 1.0e-06 59.7 36 66.7


User provided reference genes

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