Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008916 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 3.6e-73 278.1 134 100.0
CSS0041814 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 2.0e-68 262.3 148 88.5
Manes.01G070800 Manihot esculenta HOM05D000375 ORTHO05D000240 3.0e-19 99.0 122 47.5
vmacro14026 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 3.0e-19 99.0 75 65.3
Thecc.03G265600 Theobroma cacao HOM05D000375 ORTHO05D000240 8.6e-19 97.4 114 50.9
GSVIVG01019913001 Vitis vinifera HOM05D000375 ORTHO05D000240 8.6e-19 97.4 104 53.8
Rhsim07G0097500 Rhododendron simsii HOM05D000375 ORTHO05D000224 1.1e-18 97.1 75 65.3
Rhsim07G0098600 Rhododendron simsii HOM05D000375 ORTHO05D000224 1.1e-18 97.1 75 65.3
Potri.003G118100 Populus trichocarpa HOM05D000375 ORTHO05D000240 4.3e-18 95.1 135 45.9
Sabra01G0087200 Salix brachista HOM05D000375 ORTHO05D000240 5.6e-18 94.7 110 50.0
Gohir.D12G225800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.2e-17 93.6 106 51.9
Gohir.A12G223200 Gossypium hirsutum HOM05D000375 ORTHO05D000240 2.1e-17 92.8 106 50.9
Manes.02G029175 Manihot esculenta HOM05D000375 ORTHO05D000240 2.8e-17 92.4 119 47.1
Gohir.A08G175500 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.1e-16 90.5 126 45.2
TAR629G2759 Trochodendron aralioides HOM05D000375 ORTHO05D000240 1.1e-16 90.5 104 52.9
Gohir.D08G194200 Gossypium hirsutum HOM05D000375 ORTHO05D000240 3.1e-16 89.0 126 46.0
Gorai.004G204600 Gossypium raimondii HOM05D000375 ORTHO05D000240 3.1e-16 89.0 126 46.0
Duzib084G0039 Durio zibethinus HOM05D000375 ORTHO05D000240 4.0e-16 88.6 117 47.0
Ciclev10022033m.g Citrus clementina HOM05D000375 ORTHO05D000240 1.5e-15 86.7 109 49.5
Duzib068G1297 Durio zibethinus HOM05D000375 ORTHO05D000240 1.5e-15 86.7 117 45.3
TWI15G0030 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 3.4e-15 85.5 111 45.9
Potri.001G114000 Populus trichocarpa HOM05D000375 ORTHO05D000240 4.4e-15 85.1 105 49.5
COL.COLO4_23825 Corchorus olitorius HOM05D000375 ORTHO05D000240 9.9e-15 84.0 90 47.8
Gorai.008G241800 Gossypium raimondii HOM05D000375 ORTHO05D000240 1.3e-14 83.6 131 42.0
Sabra03G0082200 Salix brachista HOM05D000375 ORTHO05D000240 3.7e-14 82.0 117 43.6
Aqoxy7G00563 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 1.1e-13 80.5 96 53.1
QL12p015939 Quercus lobata HOM05D000375 ORTHO05D000240 1.4e-13 80.1 113 46.0
Nn4g26450 Nelumbo nucifera HOM05D000375 ORTHO05D000240 2.4e-13 79.3 104 46.2
TAR636G0954 Trochodendron aralioides HOM05D000375 ORTHO05D000240 4.1e-13 78.6 106 47.2
CANSAT21G1434 Cannabis sativa HOM05D000375 ORTHO05D000240 7.1e-13 77.8 100 49.0
CiPaw.11G144300 Carya illinoinensis HOM05D000375 ORTHO05D000240 3.5e-12 75.5 85 48.2
Peaxi162Scf00620g00027 Petunia axillaris HOM05D000375 ORTHO05D000240 6.0e-12 74.7 103 43.7
Dinv39048 Davidia involucrata HOM05D000375 ORTHO05D000240 7.8e-12 74.3 47 72.3
Duzib205G0951 Durio zibethinus HOM05D000375 ORTHO05D000240 1.7e-11 73.2 82 48.8
CDE12G0876 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 5.1e-11 71.6 88 51.1
Haze_09014 Corylus avellana HOM05D000375 ORTHO05D000240 5.1e-11 71.6 114 42.1
Nitab4.5_0005167g0090 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.9e-10 69.7 95 42.1
CAN.G630.25 Capsicum annuum HOM05D000375 ORTHO05D000240 2.5e-10 69.3 96 46.9
PSO782G4546 Papaver somniferum HOM05D000375 ORTHO05D000240 4.3e-10 68.6 68 54.4
Atru.chr9.1484 Acer truncatum HOM05D000375 ORTHO05D000240 5.6e-10 68.2 58 60.3
MSTRG.23649 Avicennia marina HOM05D000375 ORTHO05D000240 9.6e-10 67.4 42 69.0
Sopen08g028160 Solanum pennellii HOM05D000375 ORTHO05D000240 9.6e-10 67.4 68 52.9
Cfa012051 Carpinus fangiana HOM05D000375 ORTHO05D000240 1.6e-09 66.6 70 52.9
Solyc08g079800.4 Solanum lycopersicum HOM05D000375 ORTHO05D000240 1.6e-09 66.6 101 43.6
HPP92_022248 Vanilla planifolia HOM05D000375 ORTHO05D000240 1.6e-09 66.6 67 56.7
DCAR_006786 Daucus carota HOM05D000375 ORTHO05D000240 2.1e-09 66.2 115 36.5
PSO478G5241 Papaver somniferum HOM05D000375 ORTHO05D000240 2.1e-09 66.2 107 41.1
HanXRQChr02g0047741 Helianthus annuus HOM05D000375 ORTHO05D000240 4.7e-09 65.1 57 54.4
ECA233G1410 Erigeron canadensis HOM05D000375 ORTHO05D000240 6.2e-09 64.7 45 64.4
FvH4_7g12130 Fragaria vesca HOM05D000375 ORTHO05D000240 1.1e-08 63.9 84 47.6
FAN06G0710 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.1e-08 63.9 84 47.6
FAN06G1751 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.1e-08 63.9 84 47.6
FAN10G2530 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.1e-08 63.9 84 47.6
Lsat_1_v5_gn_6_10680 Lactuca sativa HOM05D000375 ORTHO05D000240 2.4e-08 62.8 63 49.2
Nitab4.5_0010186g0040 Nicotiana tabacum HOM05D000375 ORTHO05D000240 2.4e-08 62.8 64 48.4
MBI12_g34484_MAGBIO Magnolia biondii HOM05D000375 ORTHO05D000240 3.1e-08 62.4 84 46.4
Hma1.2p1_0033F.1_g020990 Hydrangea macrophylla HOM05D000375 ORTHO05D000240 5.2e-08 61.6 99 38.4
Prupe.2G148100 Prunus persica HOM05D000375 ORTHO05D000240 6.8e-08 61.2 52 57.7
Thecc.01G373900 Theobroma cacao HOM05D000375 ORTHO05D000240 6.8e-08 61.2 105 38.1
CsaV3_3G009530 Cucumis sativus L. HOM05D000375 ORTHO05D000240 8.9e-08 60.8 85 43.5
Potri.014G071800 Populus trichocarpa HOM05D000375 ORTHO05D000240 8.9e-08 60.8 84 41.7
ClCG05G002090 Citrullus lanatus HOM05D000375 ORTHO05D000240 1.2e-07 60.5 85 45.9
RcHm_v2.0_Chr1g0350881 Rosa chinensis HOM05D000375 ORTHO05D000240 1.2e-07 60.5 84 45.2
Dinv43727 Davidia involucrata HOM05D000375 ORTHO05D000240 1.5e-07 60.1 83 47.0
Os04g0574500 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 2.0e-07 59.7 40 70.0
MELO3C006174.2 Cucumis melo HOM05D000375 ORTHO05D000240 3.4e-07 58.9 97 38.1
FAN01G1328 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.4e-07 58.9 81 43.2
MD02G1201000 Malus domestica HOM05D000375 ORTHO05D000240 3.4e-07 58.9 54 48.1
FAN10G3750 Fragaria x ananassa HOM05D000375 ORTHO05D000240 4.4e-07 58.5 59 52.5
Sed0024415 Sechium edule HOM05D000375 ORTHO05D000240 4.4e-07 58.5 76 46.1
Zm00001eb250620 Zea mays HOM05D000375 ORTHO05D000240 4.4e-07 58.5 42 64.3
FAN03G0859 Fragaria x ananassa HOM05D000375 ORTHO05D000240 5.8e-07 58.2 59 52.5
SalBow8G5453 Salvia bowleyana HOM05D000375 ORTHO05D000240 5.8e-07 58.2 69 47.8
Actinidia33799 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.3e-06 57.0 42 66.7
AUR62002094 Chenopodium quinoa HOM05D000375 ORTHO05D000240 1.3e-06 57.0 47 63.8
Os02g0678800 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 1.3e-06 57.0 41 63.4
Dinv29125 Davidia involucrata HOM05D000375 ORTHO05D000240 1.7e-06 56.6 49 61.2
A04p33870 Brassica napus HOM05D000375 ORTHO05D000240 2.2e-06 56.2 49 53.1
BraA04t18847Z Brassica rapa HOM05D000375 ORTHO05D000240 2.2e-06 56.2 49 53.1
Sed0015644 Sechium edule HOM05D000375 ORTHO05D000240 2.2e-06 56.2 46 63.0
MSTRG.11890 Avicennia marina HOM05D000375 ORTHO05D000240 2.9e-06 55.8 73 43.8
CSS0040890 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 2.9e-06 55.8 48 62.5
Duzib138G0642 Durio zibethinus HOM05D000375 ORTHO05D000240 2.9e-06 55.8 83 38.6
Gohir.D13G162200 Gossypium hirsutum HOM05D000375 ORTHO05D000240 2.9e-06 55.8 42 69.0
Gorai.013G184200 Gossypium raimondii HOM05D000375 ORTHO05D000240 2.9e-06 55.8 42 69.0
Medtr0001s0490 Medicago truncatula HOM05D000375 ORTHO05D000240 2.9e-06 55.8 52 63.5
AUR62028212 Chenopodium quinoa HOM05D000375 ORTHO05D000240 3.8e-06 55.5 47 59.6
GSVIVG01024326001 Vitis vinifera HOM05D000375 ORTHO05D000240 3.8e-06 55.5 41 68.3
ClCG02G007720 Citrullus lanatus HOM05D000375 ORTHO05D000240 4.9e-06 55.1 39 71.8
Duzib177G0248 Durio zibethinus HOM05D000375 ORTHO05D000240 4.9e-06 55.1 41 68.3
Gohir.A02G125800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 4.9e-06 55.1 41 68.3
Potri.001G132600 Populus trichocarpa HOM05D000375 ORTHO05D000240 4.9e-06 55.1 44 59.1
Sed0013097 Sechium edule HOM05D000375 ORTHO05D000240 4.9e-06 55.1 99 37.4
Actinidia31428 Actinidia chinensis HOM05D000375 ORTHO05D000240 6.4e-06 54.7 79 41.8
EL10Ac3g05042 Beta vulgaris HOM05D000375 ORTHO05D000240 6.4e-06 54.7 74 41.9
Glyma.12G014700 Glycine max HOM05D000375 ORTHO05D000240 6.4e-06 54.7 44 65.9
Gorai.007G092400 Gossypium raimondii HOM05D000375 ORTHO05D000240 6.4e-06 54.7 82 37.8
THA.LOC104805653 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 6.4e-06 54.7 47 66.0
ATR0757G059 Amborella trichopoda HOM05D000375 ORTHO05D000240 8.4e-06 54.3 36 69.4
Os07g0467500 Oryza sativa ssp. japonica HOM05D000375 ORTHO05D000240 8.4e-06 54.3 41 56.1


User provided reference genes

Program Settings