Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 4.6e-39 164.1 82 100.0
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 6.2e-20 100.5 64 76.6
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 6.2e-20 100.5 64 76.6
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 7.6e-18 93.6 72 66.7
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 1.0e-17 93.2 68 66.2
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 2.2e-17 92.0 72 65.3
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 2.2e-17 92.0 72 65.3
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 4.9e-17 90.9 72 66.7
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 8.4e-17 90.1 64 68.8
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 1.1e-16 89.7 71 62.0
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 1.4e-16 89.4 70 64.3
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 1.9e-16 89.0 70 64.3
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 1.9e-16 89.0 70 64.3
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 2.5e-16 88.6 66 60.6
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 3.2e-16 88.2 72 58.3
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 3.2e-16 88.2 72 58.3
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 4.2e-16 87.8 70 62.9
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 5.5e-16 87.4 62 67.7
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 7.1e-16 87.0 70 62.9
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 7.1e-16 87.0 66 65.2
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 1.2e-15 86.3 70 58.6
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 1.2e-15 86.3 70 60.0
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 2.1e-15 85.5 70 60.0
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 2.7e-15 85.1 70 61.4
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 6.0e-15 84.0 70 62.9
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 6.0e-15 84.0 70 61.4
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 1.0e-14 83.2 66 60.6
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.0e-14 83.2 75 57.3
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 1.3e-14 82.8 64 59.4
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 1.3e-14 82.8 70 58.6
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 1.8e-14 82.4 70 58.6
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 2.3e-14 82.0 64 65.6
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 3.0e-14 81.6 70 58.6
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 3.0e-14 81.6 70 61.4
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 3.0e-14 81.6 64 56.2
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 3.0e-14 81.6 64 57.8
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 3.0e-14 81.6 64 57.8
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 3.9e-14 81.3 66 56.1
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 3.9e-14 81.3 64 62.5
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 6.7e-14 80.5 64 56.2
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 8.7e-14 80.1 70 60.0
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 1.5e-13 79.3 78 52.6
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 1.5e-13 79.3 64 56.2
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 1.9e-13 79.0 64 56.2
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 5.7e-13 77.4 70 57.1
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 5.7e-13 77.4 70 54.3
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 9.6e-13 76.6 64 62.5
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 1.3e-12 76.3 61 62.3
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 1.3e-12 76.3 68 50.0
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 1.3e-12 76.3 70 55.7
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.3e-12 76.3 64 60.9
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 1.6e-12 75.9 70 54.3
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 3.7e-12 74.7 64 54.7
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 3.7e-12 74.7 78 50.0
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 4.8e-12 74.3 65 56.9
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 6.2e-12 73.9 72 58.3
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 6.2e-12 73.9 62 58.1
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 1.1e-11 73.2 78 44.9
vmacro08637 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 1.8e-11 72.4 74 50.0
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 2.4e-11 72.0 64 57.8
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 3.1e-11 71.6 80 46.2
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 9.0e-11 70.1 62 48.4
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 7.6e-10 67.0 62 56.5
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.3e-09 66.2 62 56.5
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 1.7e-09 65.9 60 51.7
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 2.2e-09 65.5 70 47.1
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 3.8e-09 64.7 64 57.8
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 8.4e-09 63.5 70 44.3
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 1.1e-08 63.2 64 50.0
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 2.5e-08 62.0 81 42.0
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 2.5e-08 62.0 64 48.4
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 3.2e-08 61.6 62 43.5
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.2e-07 59.7 71 47.9
RhsimUnG0178600 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.2e-07 59.7 56 58.9
Hma1.2p1_0766F.1_g215310 Hydrangea macrophylla HOM05D007791 ORTHO05D028502 1.6e-07 59.3 62 43.5
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 2.1e-07 58.9 66 48.5
Os08g0441200 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 2.7e-07 58.5 64 40.6
Os08g0441300 Oryza sativa ssp. japonica HOM05D014452 ORTHO05D000653 2.7e-07 58.5 64 40.6
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 3.5e-07 58.2 71 45.1
RhsimUnG0178500 Rhododendron simsii HOM05D007791 ORTHO05D000653 3.5e-07 58.2 70 47.1
HPP92_019239 Vanilla planifolia HOM05D007791 ORTHO05D000653 3.5e-07 58.2 64 43.8
ClCG07G000780 Citrullus lanatus HOM05D007791 ORTHO05D044567 4.6e-07 57.8 71 43.7
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 7.9e-07 57.0 76 38.2
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 7.9e-07 57.0 64 43.8
CAN.G324.21 Capsicum annuum HOM05D007791 ORTHO05D028502 1.3e-06 56.2 63 42.9
Migut.A00979 Erythranthe guttata HOM05D001004 ORTHO05D000653 1.3e-06 56.2 64 43.8
Sed0001135 Sechium edule HOM05D001004 ORTHO05D000653 1.3e-06 56.2 65 41.5
PGSC0003DMG400011009 Solanum tuberosum HOM05D007791 ORTHO05D028502 1.8e-06 55.8 63 44.4
SMO351G0292 Selaginella moellendorffii HOM05D007791 ORTHO05D000653 2.3e-06 55.5 65 46.2
Sopen10g034330 Solanum pennellii HOM05D007791 ORTHO05D028502 2.3e-06 55.5 63 42.9
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 3.0e-06 55.1 73 41.1
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 3.0e-06 55.1 64 45.3
Ciclev10007070m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.0e-06 55.1 64 43.8
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 3.9e-06 54.7 64 43.8
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 3.9e-06 54.7 64 43.8
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 5.1e-06 54.3 64 45.3
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 5.1e-06 54.3 64 43.8
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 5.1e-06 54.3 64 45.3
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 5.1e-06 54.3 68 42.6
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 6.7e-06 53.9 64 42.2
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 6.7e-06 53.9 64 42.2
Gorai.007G143400 Gossypium raimondii HOM05D001004 ORTHO05D000653 8.7e-06 53.5 64 43.8
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 8.7e-06 53.5 64 40.6
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 8.7e-06 53.5 64 43.8


User provided reference genes

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