Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.1e-37 159.5 81 100.0
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.9e-29 132.1 81 81.5
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 5.6e-29 130.6 81 80.2
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.6e-28 127.9 81 81.5
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 4.7e-28 127.5 81 80.2
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.4e-26 121.3 81 77.8
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 5.7e-26 120.6 85 72.9
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 9.8e-26 119.8 81 74.1
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 9.2e-24 113.2 76 73.7
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.2e-23 112.8 85 67.1
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 4.6e-23 110.9 82 73.2
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 6.6e-22 107.1 82 74.4
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 1.1e-21 106.3 81 71.6
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 1.5e-21 105.9 85 67.1
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.5e-21 105.9 83 71.1
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 7.3e-21 103.6 76 75.0
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 7.3e-21 103.6 81 67.9
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.2e-20 102.8 81 70.4
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.2e-20 102.8 81 70.4
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.2e-20 102.8 81 70.4
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.6e-20 102.4 77 70.1
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.6e-20 102.4 77 70.1
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.6e-20 102.4 82 68.3
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 1.6e-20 102.4 81 69.1
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.1e-20 102.1 84 69.0
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 2.1e-20 102.1 84 69.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.1e-20 102.1 85 65.9
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 4.7e-20 100.9 81 69.1
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 6.2e-20 100.5 81 69.1
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-19 99.8 81 70.4
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.4e-19 99.4 81 69.1
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.4e-19 99.4 80 68.8
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.8e-19 99.0 83 65.1
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.3e-19 98.6 78 69.2
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 3.1e-19 98.2 81 66.7
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 4.0e-19 97.8 81 64.2
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 5.2e-19 97.4 81 69.1
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.2e-19 97.4 81 69.1
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 5.2e-19 97.4 81 64.2
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 8.9e-19 96.7 82 64.6
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 8.9e-19 96.7 83 66.3
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.5e-18 95.9 82 68.3
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.5e-18 95.9 77 68.8
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 1.5e-18 95.9 78 62.8
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.0e-18 95.5 80 63.8
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.0e-18 95.5 81 65.4
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 4.4e-18 94.4 87 59.8
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 4.4e-18 94.4 79 64.6
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 7.5e-18 93.6 83 63.9
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.3e-17 92.8 76 69.7
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.3e-17 92.8 76 69.7
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.7e-17 92.4 78 66.7
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.7e-17 92.4 76 68.4
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.2e-17 92.0 91 59.3
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.2e-17 92.0 91 59.3
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 2.9e-17 91.7 82 65.9
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.9e-17 91.7 79 63.3
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.7e-17 91.3 85 63.5
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 6.4e-17 90.5 87 57.5
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 6.4e-17 90.5 81 63.0
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 8.3e-17 90.1 77 59.7
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 8.3e-17 90.1 75 62.7
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 8.3e-17 90.1 80 66.2
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 8.3e-17 90.1 78 61.5
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.1e-16 89.7 78 65.4
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.4e-16 89.4 81 61.7
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-16 89.4 78 66.7
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.4e-16 89.4 85 57.6
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.9e-16 89.0 91 58.2
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.9e-16 89.0 76 61.8
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.9e-16 89.0 76 64.5
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.4e-16 88.6 78 64.1
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 3.2e-16 88.2 78 59.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 4.1e-16 87.8 76 61.8
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 4.1e-16 87.8 81 61.7
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.0e-16 87.0 83 57.8
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 9.2e-16 86.7 89 57.3
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.2e-15 86.3 83 60.2
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.6e-15 85.9 83 60.2
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.0e-15 85.5 84 59.5
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.7e-15 85.1 75 66.7
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.7e-15 85.1 81 59.3
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.5e-15 84.7 82 57.3
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 4.6e-15 84.3 81 58.0
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 4.6e-15 84.3 86 58.1
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.6e-15 84.3 81 61.7
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 6.0e-15 84.0 86 57.0
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 7.8e-15 83.6 78 60.3
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 7.8e-15 83.6 77 59.7
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 7.8e-15 83.6 81 56.8
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.8e-15 83.6 82 62.2
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.0e-14 83.2 72 61.1
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.0e-14 83.2 81 61.7
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.3e-14 82.8 80 62.5
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.7e-14 82.4 84 58.3
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.3e-14 82.0 78 62.8
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.3e-14 82.0 86 57.0
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 2.3e-14 82.0 78 57.7
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.0e-14 81.6 85 56.5
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 3.9e-14 81.3 77 59.7
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 5.0e-14 80.9 81 55.6
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 5.0e-14 80.9 82 56.1
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 5.0e-14 80.9 94 52.1
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 6.6e-14 80.5 81 60.5
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 6.6e-14 80.5 75 58.7
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 6.6e-14 80.5 79 59.5
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.6e-14 80.1 81 55.6
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.6e-14 80.1 82 54.9
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 8.6e-14 80.1 81 59.3
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 8.6e-14 80.1 83 59.0
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.1e-13 79.7 78 61.5
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.1e-13 79.7 77 57.1
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 1.1e-13 79.7 83 57.8
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.5e-13 79.3 81 55.6
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.5e-13 79.3 79 59.5
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.9e-13 79.0 78 59.0
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.9e-13 79.0 82 57.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.9e-13 79.0 75 60.0
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.9e-13 79.0 81 54.3
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 2.5e-13 78.6 82 59.8
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.5e-13 78.6 78 60.3
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 3.3e-13 78.2 82 58.5
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 4.3e-13 77.8 83 56.6
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 4.3e-13 77.8 81 55.6
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 4.3e-13 77.8 82 57.3
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.3e-13 77.8 74 62.2
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 5.6e-13 77.4 80 57.5
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.5e-13 76.6 93 51.6
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 9.5e-13 76.6 58 67.2
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 9.5e-13 76.6 84 50.0
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 9.5e-13 76.6 77 57.1
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.2e-12 76.3 78 59.0
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.2e-12 76.3 81 53.1
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.6e-12 75.9 84 54.8
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 2.1e-12 75.5 74 58.1
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.8e-12 75.1 89 51.7
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 3.6e-12 74.7 84 54.8
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 8.1e-12 73.6 77 57.1
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-11 72.8 76 52.6
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.8e-11 72.4 83 53.0
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.3e-11 72.0 61 67.2
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 3.1e-11 71.6 82 53.7
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 8.9e-11 70.1 78 51.3
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-10 69.7 70 55.7
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.2e-10 69.7 70 55.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.5e-10 69.3 92 50.0
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.5e-10 69.3 77 51.9
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.5e-10 69.3 71 57.7
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 2.6e-10 68.6 80 51.2
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 2.6e-10 68.6 80 51.2
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 2.6e-10 68.6 79 58.2
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 3.4e-10 68.2 98 42.9
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 5.8e-10 67.4 77 57.1
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 5.8e-10 67.4 76 50.0
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.3e-09 66.2 76 53.9
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.7e-09 65.9 79 53.2
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.7e-09 65.9 77 51.9
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 1.4e-08 62.8 84 48.8
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 1.4e-08 62.8 77 51.9
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 2.4e-08 62.0 79 53.2
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.2e-08 61.6 78 47.4
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 5.4e-08 60.8 95 41.1
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.6e-07 59.3 84 42.9
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 2.1e-07 58.9 79 48.1
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 3.5e-07 58.2 57 54.4
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.5e-07 58.2 62 58.1
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 7.8e-07 57.0 77 48.1
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 3.9e-06 54.7 68 50.0
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 6.6e-06 53.9 155 32.3
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.6e-06 53.5 71 47.9


User provided reference genes

Program Settings