Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 6.4e-160 567.4 291 100.0
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 2.8e-123 445.7 267 85.4
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 3.1e-106 389.0 216 89.8
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 4.1e-106 388.7 272 74.3
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 5.3e-106 388.3 274 74.1
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 6.9e-106 387.9 277 78.3
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 9.1e-106 387.5 272 73.9
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 9.1e-106 387.5 272 73.5
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 4.5e-105 385.2 279 75.3
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 7.7e-105 384.4 277 75.1
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 7.7e-105 384.4 212 88.7
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.3e-104 383.6 232 83.6
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 2.9e-104 382.5 271 74.2
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 3.8e-104 382.1 273 74.0
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 3.8e-104 382.1 238 83.6
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.1e-103 380.6 278 72.7
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 3.2e-103 379.0 229 83.0
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 3.2e-103 379.0 238 82.8
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.7e-102 375.9 221 83.7
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 3.6e-102 375.6 283 72.1
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 1.0e-101 374.0 264 74.2
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.8e-101 373.2 272 72.4
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 2.3e-101 372.9 253 75.9
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 3.0e-101 372.5 217 86.2
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 3.0e-101 372.5 253 75.5
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 3.9e-101 372.1 266 74.1
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 5.1e-101 371.7 228 82.9
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 6.7e-101 371.3 218 83.5
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 8.8e-101 370.9 276 73.6
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 2.0e-100 369.8 220 85.0
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 2.6e-100 369.4 272 72.8
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 2.6e-100 369.4 224 83.5
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 3.3e-100 369.0 210 87.6
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 9.7e-100 367.5 269 73.6
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 9.7e-100 367.5 244 75.8
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.7e-99 366.7 277 72.9
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 8.2e-99 364.4 265 73.6
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.4e-98 363.6 281 69.0
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 1.8e-98 363.2 296 66.9
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 2.4e-98 362.8 234 78.6
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 2.4e-98 362.8 305 68.5
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 4.1e-98 362.1 270 71.5
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 5.3e-98 361.7 260 72.7
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 7.0e-98 361.3 271 70.1
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 9.1e-98 360.9 269 69.1
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 1.5e-97 360.1 218 83.0
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.6e-97 359.4 271 72.0
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 3.5e-97 359.0 270 71.5
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.0e-96 357.5 267 71.9
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.0e-96 357.5 233 78.1
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 1.3e-96 357.1 217 81.6
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.3e-96 357.1 270 71.5
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 1.7e-96 356.7 286 68.2
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 2.9e-96 355.9 195 88.7
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 5.0e-96 355.1 250 74.0
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 5.0e-96 355.1 211 83.4
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 6.5e-96 354.8 276 69.9
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 8.5e-96 354.4 219 84.0
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 8.5e-96 354.4 223 80.3
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 1.1e-95 354.0 286 69.9
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 1.1e-95 354.0 269 72.1
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.9e-95 353.2 209 83.7
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 4.2e-95 352.1 217 81.6
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 5.5e-95 351.7 223 79.8
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 7.2e-95 351.3 223 79.8
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 7.2e-95 351.3 223 79.8
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 7.2e-95 351.3 223 79.8
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 7.2e-95 351.3 239 76.6
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 7.2e-95 351.3 239 76.6
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 9.4e-95 350.9 223 79.8
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 1.2e-94 350.5 246 75.2
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.7e-94 349.4 208 83.2
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 4.7e-94 348.6 219 80.4
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 8.0e-94 347.8 219 80.4
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.0e-93 347.4 264 72.7
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 1.8e-93 346.7 211 78.7
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 2.0e-92 343.2 215 79.5
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 3.3e-92 342.4 200 83.5
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 4.4e-92 342.0 212 81.6
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 1.1e-90 337.4 208 82.2
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 2.4e-90 336.3 208 76.9
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.0e-89 333.2 186 86.0
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.2e-88 329.7 266 68.4
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 5.0e-88 328.6 186 84.9
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.5e-87 327.0 185 87.6
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 3.2e-87 325.9 198 81.3
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 9.4e-87 324.3 212 79.7
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 4.7e-86 322.0 215 75.3
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.4e-85 320.5 247 70.0
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 6.7e-85 318.2 173 90.2
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 4.4e-84 315.5 314 57.6
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 1.4e-82 310.5 185 84.9
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 5.3e-82 308.5 216 71.8
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 2.7e-81 306.2 309 56.6
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.3e-80 303.9 222 71.2
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 2.7e-78 296.2 189 76.2
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 8.0e-78 294.7 189 77.2
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.4e-77 293.9 222 66.7
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 4.0e-77 292.4 269 60.6
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 2.2e-75 286.6 202 70.8
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 1.6e-73 280.4 192 71.9
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.7e-73 279.6 158 89.9
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 4.5e-73 278.9 215 67.0
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 4.0e-69 265.8 201 62.7
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 3.5e-65 252.7 257 57.2
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 1.6e-62 243.8 257 58.8
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 7.3e-55 218.4 121 85.1
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 2.8e-54 216.5 166 70.5
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 7.5e-52 208.4 175 64.6
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 1.7e-48 197.2 216 55.1
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 3.3e-47 193.0 209 48.8
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 5.8e-44 182.2 194 47.4
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.9e-43 179.9 121 76.9
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 8.3e-43 178.3 210 47.6
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 3.0e-40 169.9 97 84.5
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 1.9e-39 167.2 97 83.5
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 2.8e-38 163.3 173 59.0
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 3.4e-36 156.4 270 41.1
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 9.3e-34 148.3 80 87.5
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 3.0e-32 143.3 177 49.7
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 3.0e-32 143.3 78 87.2
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 1.5e-31 141.0 78 88.5
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.0e-28 130.6 78 82.1
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.6e-20 103.6 137 53.3
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 2.2e-19 100.5 79 69.6
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 8.4e-19 98.6 65 72.3
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 1.4e-18 97.8 57 82.5
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 4.3e-15 86.3 50 82.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 4.3e-15 86.3 51 80.4
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 4.8e-14 82.8 48 79.2
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 2.4e-13 80.5 55 70.9
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 4.5e-12 76.3 47 72.3
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 1.2e-09 68.2 47 70.2
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 4.6e-09 66.2 50 72.0
Cpa.g.sc179.24 Carica papaya HOM05D006042 ORTHO05D007658 3.7e-06 56.6 35 77.1


User provided reference genes

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