Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.2e-256 889.4 470 100.0
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.7e-242 842.4 469 94.7
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 4.1e-241 837.8 469 93.6
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 7.7e-240 833.6 471 93.0
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 1.7e-239 832.4 469 93.2
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 5.0e-239 830.9 468 92.5
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.1e-238 829.7 467 93.1
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 1.5e-238 829.3 469 92.8
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 2.7e-237 825.1 469 92.5
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 1.0e-236 823.2 469 91.9
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 1.4e-236 822.8 469 91.9
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 2.3e-236 822.0 469 92.8
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 2.3e-236 822.0 469 92.5
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 3.0e-236 821.6 469 92.1
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 4.0e-236 821.2 469 91.5
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 4.0e-236 821.2 469 92.5
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 5.2e-236 820.8 469 90.6
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.2e-235 819.7 469 91.5
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.6e-235 818.5 469 91.0
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 2.6e-235 818.5 467 92.3
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 5.7e-235 817.4 469 90.8
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 5.7e-235 817.4 470 90.6
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 2.2e-234 815.5 470 90.4
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 3.7e-234 814.7 469 91.0
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 3.7e-234 814.7 506 86.6
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.8e-234 814.3 471 90.7
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 8.3e-234 813.5 469 91.9
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 8.3e-234 813.5 469 90.8
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 8.3e-234 813.5 469 91.3
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.1e-233 813.1 468 92.1
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.1e-233 813.1 469 90.6
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.4e-233 812.8 469 90.2
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.1e-233 811.6 469 91.3
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 5.4e-233 810.8 469 91.0
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 5.4e-233 810.8 469 90.2
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 1.3e-231 806.2 468 90.4
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 1.7e-231 805.8 469 90.2
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 2.9e-231 805.1 469 89.8
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 8.6e-231 803.5 469 90.0
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.1e-230 803.1 469 89.8
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.1e-230 803.1 469 89.8
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.9e-230 802.4 468 89.5
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 2.5e-230 802.0 469 89.6
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 2.5e-230 802.0 470 89.4
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 3.3e-230 801.6 469 89.1
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 3.3e-230 801.6 470 89.6
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 7.2e-230 800.4 469 89.3
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 7.2e-230 800.4 470 89.1
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 1.2e-229 799.7 493 86.8
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 2.8e-229 798.5 470 88.9
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 6.1e-229 797.3 470 89.1
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 3.0e-228 795.0 468 87.8
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 4.0e-228 794.7 506 84.0
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 8.9e-228 793.5 469 88.5
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 2.2e-226 788.9 463 89.8
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 3.1e-225 785.0 544 78.9
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 2.9e-223 778.5 471 87.5
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.1e-222 776.5 471 87.0
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 3.3e-222 775.0 468 87.2
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 9.5e-222 773.5 471 86.2
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.6e-221 772.7 471 86.2
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 2.1e-221 772.3 471 86.4
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.8e-221 771.9 471 86.2
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 4.7e-221 771.2 471 86.0
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 4.7e-221 771.2 471 86.0
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 6.1e-221 770.8 471 86.4
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 8.0e-221 770.4 449 91.1
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 1.4e-220 769.6 471 85.8
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 2.3e-220 768.8 471 85.8
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 2.3e-220 768.8 471 85.8
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 5.2e-220 767.7 471 85.8
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 6.8e-220 767.3 471 86.0
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 2.9e-218 761.9 469 84.6
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 6.4e-218 760.8 469 84.2
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 8.3e-218 760.4 470 86.2
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 4.1e-217 758.1 469 84.2
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 7.0e-217 757.3 469 85.5
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 9.2e-217 756.9 470 84.9
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 9.2e-217 756.9 470 84.9
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 9.2e-217 756.9 471 84.9
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 3.0e-215 751.9 499 80.8
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 5.0e-215 751.1 471 84.5
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.5e-214 749.6 470 85.5
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 4.3e-214 748.0 493 80.9
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 4.3e-214 748.0 491 82.3
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 4.3e-214 748.0 443 88.9
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 3.4e-211 738.4 492 81.1
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 3.2e-209 731.9 418 92.3
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.1e-205 719.2 470 84.0
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.4e-201 706.4 418 90.2
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 3.5e-200 701.8 418 87.8
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 3.5e-200 701.8 418 87.8
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.7e-199 699.5 397 92.9
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.7e-197 691.4 471 81.1
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 2.2e-194 682.6 461 80.3
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 2.4e-193 679.1 423 85.1
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.6e-189 666.4 469 73.1
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 3.1e-188 662.1 383 92.2
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 1.3e-175 620.2 373 87.1
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.1e-174 617.1 350 91.4
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.6e-173 613.2 374 85.6
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.8e-172 609.8 340 96.5
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 3.5e-168 595.5 467 66.4
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 9.6e-166 587.4 364 86.5
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 2.8e-165 585.9 469 69.9
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 3.1e-164 582.4 470 63.0
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 4.6e-160 568.5 324 94.8
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 2.3e-143 513.1 312 82.7
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.3e-140 501.9 308 89.9
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 6.1e-136 488.4 365 72.9
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 9.4e-129 464.5 324 79.9
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 2.1e-112 410.2 246 89.8
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 2.6e-94 350.1 312 66.3
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 3.3e-89 333.2 238 77.3
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.2e-86 324.7 182 87.4
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.6e-86 323.6 173 92.5
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.1e-80 303.9 302 57.3
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 4.4e-78 296.2 505 37.8
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 5.4e-76 289.3 210 62.9
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 7.6e-70 268.9 294 54.8
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.3e-66 258.1 160 88.8
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 9.9e-62 241.9 195 72.3
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 5.6e-57 226.1 138 90.6
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.8e-56 223.8 407 42.3
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 5.5e-52 209.5 119 95.8
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 3.1e-47 193.7 322 38.5
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 5.3e-47 193.0 111 92.8
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.0e-46 191.0 107 81.3
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.9e-44 184.5 111 91.0
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 3.2e-44 183.7 491 30.3
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.2e-44 183.7 114 76.3
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.2e-37 161.0 91 93.4
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.1e-31 140.2 76 93.4
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.9e-30 136.3 76 88.2
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 2.2e-29 134.4 81 86.4
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.9e-28 131.3 74 87.8
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.6e-27 128.3 72 84.7
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 6.1e-27 126.3 72 84.7
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.0e-26 125.6 72 84.7
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 1.7e-24 118.2 99 67.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 4.8e-24 116.7 79 74.7
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.5e-20 105.1 57 86.0
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 2.1e-19 101.3 57 84.2
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.4e-15 88.6 52 88.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.4e-15 88.6 57 84.2
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 9.1e-15 85.9 74 66.2
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 1.0e-13 82.4 46 97.8
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.7e-13 81.6 52 86.5
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 3.8e-13 80.5 44 93.2
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 4.1e-07 60.5 33 93.9


User provided reference genes

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