Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.9e-110 402.5 200 100.0
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.5e-78 295.8 169 92.3
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 7.7e-72 274.2 167 86.8
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 1.4e-70 270.0 176 82.4
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 2.7e-69 265.8 169 82.2
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 3.3e-67 258.8 169 81.1
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 5.7e-67 258.1 169 79.3
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 9.7e-67 257.3 193 69.4
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 4.5e-64 248.4 169 75.1
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 3.8e-63 245.4 169 75.1
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 5.0e-63 245.0 169 76.3
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 5.0e-63 245.0 169 76.3
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 5.0e-63 245.0 167 76.0
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 5.0e-63 245.0 169 73.4
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 1.1e-62 243.8 194 67.0
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 1.9e-62 243.0 194 66.5
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 3.2e-62 242.3 186 65.1
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 3.2e-62 242.3 169 74.0
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 4.2e-62 241.9 168 73.2
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 5.5e-62 241.5 152 78.9
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 5.5e-62 241.5 152 78.3
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 1.2e-61 240.4 169 72.8
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 2.7e-61 239.2 151 80.8
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 3.6e-61 238.8 169 72.8
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 3.6e-61 238.8 169 73.4
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 3.6e-61 238.8 151 80.8
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 4.7e-61 238.4 152 77.0
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 4.7e-61 238.4 169 74.0
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 6.1e-61 238.0 152 77.0
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 8.0e-61 237.7 169 72.8
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 1.4e-60 236.9 170 73.5
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 1.4e-60 236.9 151 78.1
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.8e-60 236.5 151 79.5
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 3.0e-60 235.7 151 79.5
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 8.8e-60 234.2 169 71.6
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 1.5e-59 233.4 152 78.3
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 3.3e-59 232.3 151 78.1
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 4.4e-59 231.9 169 70.4
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 7.5e-59 231.1 169 71.0
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 7.5e-59 231.1 169 71.0
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 9.7e-59 230.7 169 70.4
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 1.7e-58 229.9 169 70.4
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 2.2e-58 229.6 152 75.7
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 2.2e-58 229.6 169 70.4
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 4.8e-58 228.4 168 70.8
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 2.4e-57 226.1 152 74.3
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 5.3e-57 224.9 168 69.0
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 7.0e-57 224.6 169 68.6
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 7.0e-57 224.6 152 74.3
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 9.1e-57 224.2 169 68.0
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 9.1e-57 224.2 169 68.0
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 1.2e-56 223.8 168 70.2
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 2.7e-56 222.6 168 69.6
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 2.7e-56 222.6 169 67.5
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 3.5e-56 222.2 168 69.6
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 3.5e-56 222.2 169 69.2
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 4.5e-56 221.9 169 69.2
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 5.9e-56 221.5 152 73.0
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 7.7e-56 221.1 152 73.7
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 1.0e-55 220.7 168 68.5
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.3e-55 220.3 169 67.5
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 1.3e-55 220.3 168 69.0
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 1.7e-55 219.9 168 68.5
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 2.9e-55 219.2 186 60.8
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 6.5e-55 218.0 169 68.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 1.9e-54 216.5 152 71.1
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 3.2e-54 215.7 186 62.9
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 4.2e-54 215.3 194 58.2
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 1.2e-53 213.8 151 71.5
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 2.1e-53 213.0 168 66.7
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 2.1e-53 213.0 168 66.7
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 2.1e-53 213.0 168 66.7
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 1.8e-52 209.9 169 65.7
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 2.3e-52 209.5 168 66.1
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 4.4e-51 205.3 170 65.3
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 3.1e-49 199.1 169 64.5
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.6e-48 196.8 169 63.3
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 4.5e-48 195.3 169 59.8
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 7.2e-46 188.0 169 62.7
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 2.8e-45 186.0 185 54.1
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 2.8e-45 186.0 133 68.4
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 5.2e-44 181.8 166 56.0
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 4.5e-40 168.7 148 57.4
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 4.5e-40 168.7 170 53.5
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 1.7e-39 166.8 152 59.9
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 7.3e-38 161.4 101 82.2
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 5.8e-35 151.8 169 49.1
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 1.7e-34 150.2 152 55.3
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.7e-34 150.2 152 55.3
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 2.5e-30 136.3 130 54.6
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 5.6e-30 135.2 165 44.2
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 2.3e-28 129.8 176 44.9
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 3.1e-28 129.4 87 72.4
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 8.3e-26 121.3 171 43.3
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 9.2e-25 117.9 152 46.1
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 1.6e-24 117.1 169 40.8
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 2.5e-22 109.8 66 78.8
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 4.0e-20 102.4 84 57.1
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.6e-19 99.8 64 76.6
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 6.6e-15 85.1 60 75.0
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 6.6e-15 85.1 60 75.0
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 6.6e-15 85.1 60 75.0
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 6.6e-15 85.1 60 75.0
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 8.6e-15 84.7 75 61.3


User provided reference genes

Program Settings