Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008844 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 6.3e-35 150.6 73 100.0
CSS0004036 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 2.9e-27 125.2 84 78.6
Nn6g31749 Nelumbo nucifera HOM05D008020 ORTHO05D010140 1.0e-16 90.1 73 64.4
Rhsim06G0008300 Rhododendron simsii HOM05D008020 ORTHO05D010140 1.3e-16 89.7 73 64.4
Actinidia29785 Actinidia chinensis HOM05D008020 ORTHO05D010140 8.6e-16 87.0 73 61.6
Thecc.08G057500 Theobroma cacao HOM05D008020 ORTHO05D010140 4.7e-14 81.3 74 58.1
PSO210G7351 Papaver somniferum HOM05D008020 ORTHO05D010140 1.1e-13 80.1 75 56.0
Migut.C00948 Erythranthe guttata HOM05D008020 ORTHO05D010140 1.8e-13 79.3 74 60.8
Migut.C00952 Erythranthe guttata HOM05D008020 ORTHO05D010140 1.8e-13 79.3 74 60.8
Gohir.D01G093200 Gossypium hirsutum HOM05D008020 ORTHO05D010140 1.8e-13 79.3 73 57.5
Gorai.002G118600 Gossypium raimondii HOM05D008020 ORTHO05D010140 1.8e-13 79.3 73 57.5
Oeu056212.1 Olea europaea HOM05D008020 ORTHO05D010140 1.8e-13 79.3 74 60.8
Gohir.A01G106700 Gossypium hirsutum HOM05D008020 ORTHO05D010140 3.1e-13 78.6 73 57.5
TAR625G0930 Trochodendron aralioides HOM05D008020 ORTHO05D010140 4.0e-13 78.2 67 62.7
Os03g0133100 Oryza sativa ssp. japonica HOM05D008020 ORTHO05D010140 6.8e-13 77.4 71 60.6
EL10Ac1g01981 Beta vulgaris HOM05D008020 ORTHO05D010140 1.2e-12 76.6 71 57.7
TWI56G1414 Tripterygium wilfordii HOM05D008020 ORTHO05D010140 1.2e-12 76.6 72 56.9
Haze_22756 Corylus avellana HOM05D008020 ORTHO05D010140 1.5e-12 76.3 72 55.6
Manes.05G135100 Manihot esculenta HOM05D008020 ORTHO05D010140 4.4e-12 74.7 74 59.5
COL.COLO4_00185 Corchorus olitorius HOM05D008020 ORTHO05D010140 5.8e-12 74.3 77 53.2
COL.COLO4_03997 Corchorus olitorius HOM05D008020 ORTHO05D010140 9.9e-12 73.6 77 53.2
Eucgr.F03547 Eucalyptus grandis HOM05D008020 ORTHO05D010140 1.3e-11 73.2 73 53.4
Psat5g011800 Pisum sativum HOM05D008020 ORTHO05D010140 1.3e-11 73.2 74 56.8
RcHm_v2.0_Chr6g0304161 Rosa chinensis HOM05D008020 ORTHO05D010140 1.7e-11 72.8 76 53.9
ClCG11G018630 Citrullus lanatus HOM05D008020 ORTHO05D010140 2.2e-11 72.4 73 54.8
SalBow7G2452 Salvia bowleyana HOM05D008020 ORTHO05D010140 2.9e-11 72.0 66 57.6
Phvul.009G021900 Phaseolus vulgaris HOM05D008020 ORTHO05D010140 3.7e-11 71.6 73 56.2
Glyma.04G018700 Glycine max HOM05D008020 ORTHO05D010140 4.9e-11 71.2 73 56.2
Glyma.06G019000 Glycine max HOM05D008020 ORTHO05D010140 4.9e-11 71.2 73 56.2
CDE05G0785 Ceratophyllum demersum HOM05D008020 ORTHO05D010140 6.4e-11 70.9 73 57.5
Medtr3g115170 Medicago truncatula HOM05D008020 ORTHO05D010140 6.4e-11 70.9 73 54.8
Zm00001eb402590 Zea mays HOM05D008020 ORTHO05D010140 6.4e-11 70.9 77 55.8
FAN15G1770 Fragaria x ananassa HOM05D008020 ORTHO05D010140 1.4e-10 69.7 83 48.2
Sc26g0004630 Simmondsia chinensis HOM05D008020 ORTHO05D010140 1.4e-10 69.7 73 54.8
ATR0106G002 Amborella trichopoda HOM05D008020 ORTHO05D010140 1.9e-10 69.3 74 52.7
Cpa.g.sc26.209 Carica papaya HOM05D008020 ORTHO05D010140 1.9e-10 69.3 74 50.0
FvH4_2g37570 Fragaria vesca HOM05D008020 ORTHO05D010140 1.9e-10 69.3 84 47.6
VMungo1309G2936 Vigna mungo HOM05D008020 ORTHO05D010140 2.4e-10 68.9 77 53.2
MELO3C017014.2 Cucumis melo HOM05D008020 ORTHO05D010140 3.2e-10 68.6 75 52.0
unitig_0.g2104 Utricularia gibba HOM05D008020 ORTHO05D010140 3.2e-10 68.6 73 53.4
Duzib041G0109 Durio zibethinus HOM05D008020 ORTHO05D010140 4.1e-10 68.2 72 52.8
ECA232G3495 Erigeron canadensis HOM05D008020 ORTHO05D010140 7.1e-10 67.4 78 53.8
Lj1g0023017 Lotus japonicus HOM05D008020 ORTHO05D010140 7.1e-10 67.4 73 53.4
Ca_15441_v3 Cicer arietinum L. HOM05D008020 ORTHO05D010140 3.5e-09 65.1 74 54.1
MD15G1003000 Malus domestica HOM05D008020 ORTHO05D010140 6.0e-09 64.3 72 54.2
Lalb_Chr11g0061691 Lupinus albus HOM05D008020 ORTHO05D010140 7.8e-09 63.9 75 52.0
Cfa014061 Carpinus fangiana HOM05D008020 ORTHO05D010140 1.0e-08 63.5 67 52.2
Ah.00g000390 Amaranthus hybridus HOM05D008020 ORTHO05D010140 3.9e-08 61.6 72 52.8
Carub.0008s0691 Capsella rubella HOM05D008020 ORTHO05D010140 5.1e-08 61.2 81 49.4
CARHR284890 Cardamine hirsuta HOM05D008020 ORTHO05D010140 5.1e-08 61.2 89 44.9
BcaC01g05309 Brassica carinata HOM05D008020 ORTHO05D010140 8.6e-08 60.5 90 41.1
HanXRQChr15g0492771 Helianthus annuus HOM05D008020 ORTHO05D010140 8.6e-08 60.5 75 50.7
BcaB01g03440 Brassica carinata HOM05D008020 ORTHO05D010140 1.1e-07 60.1 90 42.2
arahy.Tifrunner.gnm1.ann1.IQ4KFY Arachis hypogaea HOM05D008020 ORTHO05D010140 1.5e-07 59.7 76 48.7
BolC3t15181H Brassica oleracea HOM05D008020 ORTHO05D010140 1.9e-07 59.3 90 41.1
Sp7g08310 Schrenkiella parvula HOM05D008020 ORTHO05D010140 1.9e-07 59.3 90 42.2
AT5G42290 Arabidopsis thaliana HOM05D008020 ORTHO05D010140 2.5e-07 58.9 88 45.5
C03p28110 Brassica napus HOM05D008020 ORTHO05D010140 2.5e-07 58.9 90 40.0
Lsat_1_v5_gn_9_44980 Lactuca sativa HOM05D008020 ORTHO05D010140 2.5e-07 58.9 75 49.3
Thhalv10009649m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 3.3e-07 58.5 90 42.2
CsaV3_4G037160 Cucumis sativus L. HOM05D008020 ORTHO05D010140 9.5e-07 57.0 66 50.0
Ciclev10003459m.g Citrus clementina HOM05D008020 ORTHO05D010140 1.2e-06 56.6 61 52.5
AL8G19330 Arabidopsis lyrata HOM05D008020 ORTHO05D010140 1.6e-06 56.2 88 44.3
Thhalv10028031m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 1.6e-06 56.2 90 41.1
Atru.chr13.153 Acer truncatum HOM05D008020 ORTHO05D010140 3.6e-06 55.1 63 50.8
AUR62036888 Chenopodium quinoa HOM05D008020 ORTHO05D010140 3.6e-06 55.1 66 51.5
AUR62043558 Chenopodium quinoa HOM05D008020 ORTHO05D010140 3.6e-06 55.1 66 51.5


User provided reference genes

Program Settings