Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008834 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 5.1e-102 374.4 186 100.0
CSS0000160 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 6.9e-99 364.0 197 93.9
CSS0006994 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 2.0e-82 309.3 196 82.7
CSS0032384 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 2.0e-82 309.3 196 82.7
CSS0043047 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 1.0e-54 217.2 193 64.2
CSS0045073 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 1.0e-54 217.2 193 64.2
Dinv17001 Davidia involucrata HOM05D006354 ORTHO05D007773 4.1e-51 205.3 193 60.6
Dinv42950 Davidia involucrata HOM05D006354 ORTHO05D007773 4.1e-51 205.3 193 60.6
Dinv43150 Davidia involucrata HOM05D006354 ORTHO05D007773 4.1e-51 205.3 193 60.6
Actinidia23941 Actinidia chinensis HOM05D006354 ORTHO05D007773 1.2e-50 203.8 193 59.6
vmacro14519 Vaccinium macrocarpon HOM05D006354 ORTHO05D007773 3.5e-50 202.2 191 59.2
Hma1.2p1_0418F.1_g149110 Hydrangea macrophylla HOM05D006354 ORTHO05D007773 1.4e-48 196.8 235 50.6
Cc01_g12860 Coffea canephora HOM05D006354 ORTHO05D007773 5.2e-46 188.3 190 55.8
CiPaw.13G094400 Carya illinoinensis HOM05D006354 ORTHO05D007773 1.5e-45 186.8 240 48.3
QL01p032009 Quercus lobata HOM05D006354 ORTHO05D007773 5.7e-45 184.9 237 46.8
PGSC0003DMG402026981 Solanum tuberosum HOM05D006354 ORTHO05D007773 5.7e-45 184.9 238 46.2
Hund18908 Selenicereus undatus HOM05D006354 ORTHO05D007773 2.8e-44 182.6 193 53.4
Solyc06g071900.3 Solanum lycopersicum HOM05D006354 ORTHO05D007773 2.8e-44 182.6 238 45.8
Sopen06g028180 Solanum pennellii HOM05D006354 ORTHO05D007773 2.8e-44 182.6 238 45.8
TWI79G1739 Tripterygium wilfordii HOM05D006354 ORTHO05D007773 2.8e-44 182.6 191 53.4
Lj2A1062T49 Lonicera japonica HOM05D006354 ORTHO05D007773 3.7e-44 182.2 193 54.4
Duzib168G1732 Durio zibethinus HOM05D006354 ORTHO05D007773 6.3e-44 181.4 191 53.9
RcHm_v2.0_Chr5g0064501 Rosa chinensis HOM05D006354 ORTHO05D007773 6.3e-44 181.4 193 54.9
FAN11G1115 Fragaria x ananassa HOM05D006354 ORTHO05D007773 1.4e-43 180.3 193 54.9
Cpa.g.sc81.152 Carica papaya HOM05D006354 ORTHO05D007773 1.8e-43 179.9 193 53.4
Peaxi162Scf00046g10227 Petunia axillaris HOM05D006354 ORTHO05D007773 1.8e-43 179.9 191 52.9
EL10Ac7g16019 Beta vulgaris HOM05D006354 ORTHO05D007773 3.1e-43 179.1 193 51.8
Cfa009012 Carpinus fangiana HOM05D002216 ORTHO05D007773 3.1e-43 179.1 193 53.9
DCAR_018909 Daucus carota HOM05D006354 ORTHO05D007773 3.1e-43 179.1 238 45.8
FvH4_3g36060 Fragaria vesca HOM05D006354 ORTHO05D007773 3.1e-43 179.1 193 54.9
FAN21G2277 Fragaria x ananassa HOM05D006354 ORTHO05D007773 3.1e-43 179.1 193 54.9
ClCG02G020110 Citrullus lanatus HOM05D006354 ORTHO05D007773 4.1e-43 178.7 194 52.6
CsaV3_6G016810 Cucumis sativus L. HOM05D006354 ORTHO05D007773 4.1e-43 178.7 194 53.1
Haze_12045 Corylus avellana HOM05D002216 ORTHO05D007773 9.1e-43 177.6 193 53.4
FAN16G3445 Fragaria x ananassa HOM05D006354 ORTHO05D007773 9.1e-43 177.6 193 54.4
VMungo1080G0880 Vigna mungo HOM05D006354 ORTHO05D007773 9.1e-43 177.6 193 53.4
Sc06g0008310 Simmondsia chinensis HOM05D006354 ORTHO05D007773 1.2e-42 177.2 191 50.8
MELO3C025913.2 Cucumis melo HOM05D006354 ORTHO05D007773 1.6e-42 176.8 194 52.6
Manes.01G174100 Manihot esculenta HOM05D006354 ORTHO05D007773 1.6e-42 176.8 193 52.3
SalBow3G3492 Salvia bowleyana HOM05D006354 ORTHO05D007773 2.0e-42 176.4 191 51.3
CAN.G1046.5 Capsicum annuum HOM05D006354 ORTHO05D007773 3.5e-42 175.6 193 51.3
Prupe.6G077700 Prunus persica HOM05D006354 ORTHO05D007773 3.5e-42 175.6 238 46.2
Glyma.15G038300 Glycine max HOM05D006354 ORTHO05D007773 4.5e-42 175.3 193 52.3
Nitab4.5_0004018g0070 Nicotiana tabacum HOM05D006354 ORTHO05D007773 4.5e-42 175.3 187 51.9
MSTRG.18578 Avicennia marina HOM05D006354 ORTHO05D007773 5.9e-42 174.9 190 51.6
AUR62001785 Chenopodium quinoa HOM05D006354 ORTHO05D007773 5.9e-42 174.9 193 49.7
DCAR_005337 Daucus carota HOM05D006354 ORTHO05D007773 5.9e-42 174.9 193 52.8
Phvul.L005443 Phaseolus vulgaris HOM05D006354 ORTHO05D007773 5.9e-42 174.9 193 52.3
arahy.Tifrunner.gnm1.ann1.J6ZHUK Arachis hypogaea HOM05D006354 ORTHO05D007773 7.7e-42 174.5 193 51.3
HanXRQChr08g0235771 Helianthus annuus HOM05D006354 ORTHO05D007773 7.7e-42 174.5 191 50.3
TAR633G1968 Trochodendron aralioides HOM05D006354 ORTHO05D007773 7.7e-42 174.5 191 51.8
CANSAT54G2536 Cannabis sativa HOM05D006354 ORTHO05D007773 1.3e-41 173.7 236 44.5
Potri.009G030900 Populus trichocarpa HOM05D006354 ORTHO05D007773 1.7e-41 173.3 191 51.3
Sabra09G0021800 Salix brachista HOM05D006354 ORTHO05D007773 1.7e-41 173.3 191 51.8
Thecc.10G082700 Theobroma cacao HOM05D006354 ORTHO05D007773 1.7e-41 173.3 191 52.4
Glyma.13G336000 Glycine max HOM05D006354 ORTHO05D007773 2.2e-41 172.9 193 51.8
MD11G1109000 Malus domestica HOM05D006354 ORTHO05D007773 2.2e-41 172.9 193 51.8
Manes.07G091301 Manihot esculenta HOM05D006354 ORTHO05D007773 3.8e-41 172.2 191 51.3
unitig_746.g26734 Utricularia gibba HOM05D006354 ORTHO05D007773 3.8e-41 172.2 192 50.0
ECA238G1940 Erigeron canadensis HOM05D006354 ORTHO05D007773 5.0e-41 171.8 193 49.7
Manes.07G090800 Manihot esculenta HOM05D006354 ORTHO05D007773 5.0e-41 171.8 193 51.3
PGR083G0842 Punica granatum HOM05D006354 ORTHO05D007773 5.0e-41 171.8 191 51.8
Migut.D02102 Erythranthe guttata HOM05D006354 ORTHO05D007773 6.5e-41 171.4 191 51.8
Gohir.D07G102700 Gossypium hirsutum HOM05D006354 ORTHO05D007773 8.5e-41 171.0 191 50.8
Gorai.001G110600 Gossypium raimondii HOM05D006354 ORTHO05D007773 8.5e-41 171.0 191 50.8
Gohir.A07G098400 Gossypium hirsutum HOM05D006354 ORTHO05D007773 1.9e-40 169.9 191 50.3
Lalb_Chr17g0347271 Lupinus albus HOM05D006354 ORTHO05D007773 1.9e-40 169.9 191 50.8
Ciclev10028134m.g Citrus clementina HOM05D006354 ORTHO05D007773 3.2e-40 169.1 191 51.3
Sed0003888 Sechium edule HOM05D006354 ORTHO05D007773 3.2e-40 169.1 194 50.5
Lj3g0014698 Lotus japonicus HOM05D006354 ORTHO05D007773 4.2e-40 168.7 193 49.7
Rhsim01G0227400 Rhododendron simsii HOM05D006354 ORTHO05D007773 4.2e-40 168.7 193 53.9
THA.LOC104800659 Tarenaya hassleriana HOM05D006354 ORTHO05D007773 4.2e-40 168.7 193 49.2
Eucgr.H04667 Eucalyptus grandis HOM05D006354 ORTHO05D007773 5.5e-40 168.3 189 51.3
BcaC07g42486 Brassica carinata HOM05D006354 ORTHO05D007773 7.2e-40 167.9 238 40.3
COL.COLO4_17142 Corchorus olitorius HOM05D006354 ORTHO05D007773 7.2e-40 167.9 187 52.4
CARHR007380 Cardamine hirsuta HOM05D006354 ORTHO05D007773 2.1e-39 166.4 236 41.1
Nn5g26915 Nelumbo nucifera HOM05D006354 ORTHO05D007773 2.1e-39 166.4 191 49.2
Thhalv10007326m.g Eutrema salsugineum HOM05D006354 ORTHO05D007773 2.7e-39 166.0 191 46.6
Ah.06g184240 Amaranthus hybridus HOM05D006354 ORTHO05D007773 6.1e-39 164.9 191 48.7
MBI16_g39932_MAGBIO Magnolia biondii HOM05D006354 ORTHO05D007773 6.1e-39 164.9 193 48.7
Medtr2g096880 Medicago truncatula HOM05D006354 ORTHO05D007773 8.0e-39 164.5 193 48.7
Atru.BG.120.p Acer truncatum HOM05D006354 ORTHO05D007773 1.0e-38 164.1 232 46.1
AL1G17770 Arabidopsis lyrata HOM05D006354 ORTHO05D007773 1.8e-38 163.3 191 46.1
BcaC07g41984 Brassica carinata HOM05D006354 ORTHO05D007773 2.3e-38 162.9 236 39.4
C08p50450 Brassica napus HOM05D006354 ORTHO05D007773 2.3e-38 162.9 236 39.4
BolC8t52573H Brassica oleracea HOM05D006354 ORTHO05D007773 2.3e-38 162.9 236 39.4
Psat5g284560 Pisum sativum HOM05D006354 ORTHO05D007773 2.3e-38 162.9 193 48.2
Aa31sc13G80 Aethionema arabicum HOM05D006354 ORTHO05D007773 3.0e-38 162.5 191 46.1
Sed0005059 Sechium edule HOM05D006354 ORTHO05D007773 5.2e-38 161.8 194 49.5
TPR.G34321 Trifolium pratense HOM05D006354 ORTHO05D007773 5.2e-38 161.8 193 48.2
AT1G07590 Arabidopsis thaliana HOM05D006354 ORTHO05D007773 6.7e-38 161.4 191 46.6
BraA09t41965Z Brassica rapa HOM05D006354 ORTHO05D007773 1.2e-37 160.6 236 39.0
Carub.0001s0691 Capsella rubella HOM05D006354 ORTHO05D007773 1.2e-37 160.6 191 46.1
Oeu019195.1 Olea europaea HOM05D006354 ORTHO05D007773 1.2e-37 160.6 178 52.2
PSO151G0044 Papaver somniferum HOM05D006354 ORTHO05D007773 1.2e-37 160.6 193 48.2
PSO339G2149 Papaver somniferum HOM05D006354 ORTHO05D007773 1.2e-37 160.6 193 48.2
A09p66280 Brassica napus HOM05D006354 ORTHO05D007773 3.3e-37 159.1 191 44.0
Aqoxy2G02124 Aquilegia oxysepala HOM05D006354 ORTHO05D007773 7.5e-37 157.9 193 46.6
Aqoxy455s003 Aquilegia oxysepala HOM05D006354 ORTHO05D007773 7.5e-37 157.9 193 46.6
Sp1g06320 Schrenkiella parvula HOM05D006354 ORTHO05D007773 7.5e-37 157.9 191 45.0
GSVIVG01024964001 Vitis vinifera HOM05D006354 ORTHO05D007773 1.7e-36 156.8 183 52.5
Lsat_1_v5_gn_9_23500 Lactuca sativa HOM05D006354 ORTHO05D007773 7.0e-35 151.4 191 44.5
ATR0827G002 Amborella trichopoda HOM05D006354 ORTHO05D007773 7.7e-34 147.9 193 43.5
HPP92_025528 Vanilla planifolia HOM05D006354 ORTHO05D007773 3.8e-33 145.6 191 44.0
HPP92_025507 Vanilla planifolia HOM05D006354 ORTHO05D007773 8.5e-33 144.4 193 44.0
SHI07598 Sapria himalayana HOM05D006354 ORTHO05D007773 1.6e-31 140.2 192 44.3
CDE06G0212 Ceratophyllum demersum HOM05D006354 ORTHO05D007773 9.1e-27 124.4 188 39.9
MBI16_g22330_MAGBIO Magnolia biondii HOM05D006354 ORTHO05D007773 1.3e-25 120.6 149 48.3
AUR62009573 Chenopodium quinoa HOM05D006354 ORTHO05D007773 4.2e-24 115.5 159 44.0
Ca_01327_v3 Cicer arietinum L. HOM05D006354 ORTHO05D007773 9.8e-21 104.4 193 36.8
Nitab4.5_0002726g0010 Nicotiana tabacum HOM05D004808 ORTHO05D007773 1.3e-17 94.0 143 40.6
CDE06G1477 Ceratophyllum demersum HOM05D006354 ORTHO05D007773 1.8e-14 83.6 187 33.7


User provided reference genes

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