Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008806 Camellia sinensis var. sinensis HOM05D000521 ORTHO05D000384 6.2e-38 160.2 77 100.0
CSS0031270 Camellia sinensis var. sinensis HOM05D000521 ORTHO05D000384 3.1e-37 157.9 77 98.7
CSS0035837 Camellia sinensis var. sinensis HOM05D000521 ORTHO05D000384 6.7e-16 87.0 43 97.7
Dinv13452 Davidia involucrata HOM05D000521 ORTHO05D000384 2.6e-12 75.1 43 81.4
CSS0002192 Camellia sinensis var. sinensis HOM05D000521 ORTHO05D000384 7.7e-12 73.6 41 85.4
CSS0008465 Camellia sinensis var. sinensis HOM05D000521 ORTHO05D000384 7.7e-12 73.6 41 85.4
DCAR_001984 Daucus carota HOM05D000521 ORTHO05D000384 8.5e-11 70.1 43 76.7
THA.LOC104810331 Tarenaya hassleriana HOM05D000521 ORTHO05D000384 8.5e-11 70.1 44 72.7
Cpa.g.sc119.62 Carica papaya HOM05D000521 ORTHO05D000384 1.4e-10 69.3 43 74.4
Ciclev10014524m.g Citrus clementina HOM05D000521 ORTHO05D000384 1.4e-10 69.3 43 74.4
Cc01_g00640 Coffea canephora HOM05D000521 ORTHO05D000384 1.9e-10 68.9 37 89.2
SalBow3G4158 Salvia bowleyana HOM05D000521 ORTHO05D000384 1.9e-10 68.9 47 68.1
CiPaw.13G175700 Carya illinoinensis HOM05D000521 ORTHO05D000384 3.2e-10 68.2 43 76.7
Lj2C727T2 Lonicera japonica HOM05D000521 ORTHO05D000384 3.2e-10 68.2 42 76.2
Sed0008405 Sechium edule HOM05D000521 ORTHO05D000384 3.2e-10 68.2 74 55.4
Oeu033918.1 Olea europaea HOM05D000521 ORTHO05D000384 4.2e-10 67.8 40 75.0
Thecc.09G208400 Theobroma cacao HOM05D000521 ORTHO05D000384 4.2e-10 67.8 42 73.8
Hma1.2p1_0843F.1_g227350 Hydrangea macrophylla HOM05D000521 ORTHO05D000384 5.5e-10 67.4 43 76.7
TAR369G0368 Trochodendron aralioides HOM05D000521 ORTHO05D000384 5.5e-10 67.4 43 72.1
Haze_22955 Corylus avellana HOM05D000521 ORTHO05D000384 1.2e-09 66.2 44 72.7
Haze_22961 Corylus avellana HOM05D000118 ORTHO05D000872 1.2e-09 66.2 44 72.7
Duzib150G0786 Durio zibethinus HOM05D000521 ORTHO05D000384 1.2e-09 66.2 42 73.8
Lsat_1_v5_gn_2_52540 Lactuca sativa HOM05D000521 ORTHO05D000384 1.2e-09 66.2 67 50.7
Rhsim13G0231400 Rhododendron simsii HOM05D000521 ORTHO05D000384 1.2e-09 66.2 33 93.9
vmacro04227 Vaccinium macrocarpon HOM05D000521 ORTHO05D000384 1.2e-09 66.2 33 93.9
ClCG02G024040 Citrullus lanatus HOM05D000521 ORTHO05D000384 1.6e-09 65.9 74 54.1
MELO3C014686.2 Cucumis melo HOM05D000521 ORTHO05D000384 1.6e-09 65.9 74 54.1
CsaV3_4G023290 Cucumis sativus L. HOM05D000521 ORTHO05D000384 1.6e-09 65.9 74 54.1
Duzib170G0358 Durio zibethinus HOM05D000521 ORTHO05D000384 1.6e-09 65.9 42 71.4
QL01p008500 Quercus lobata HOM05D000521 ORTHO05D000384 1.6e-09 65.9 43 72.1
Actinidia16257 Actinidia chinensis HOM05D000521 ORTHO05D000384 2.7e-09 65.1 35 88.6
CARHR088300 Cardamine hirsuta HOM05D000521 ORTHO05D000384 2.7e-09 65.1 42 73.8
PSO384G2379 Papaver somniferum HOM05D000521 ORTHO05D000384 2.7e-09 65.1 46 73.9
Potri.003G218800 Populus trichocarpa HOM05D000521 ORTHO05D000384 2.7e-09 65.1 43 72.1
PGR102G1784 Punica granatum HOM05D000521 ORTHO05D000384 2.7e-09 65.1 33 90.9
Atru.chr3.2366 Acer truncatum HOM05D000521 ORTHO05D000384 3.6e-09 64.7 43 72.1
Cfa009580 Carpinus fangiana HOM05D000521 ORTHO05D000384 3.6e-09 64.7 44 70.5
Peaxi162Scf00273g00315 Petunia axillaris HOM05D000521 ORTHO05D000384 3.6e-09 64.7 43 69.8
Sabra03G0163200 Salix brachista HOM05D000521 ORTHO05D000384 3.6e-09 64.7 43 72.1
Gohir.D06G110900 Gossypium hirsutum HOM05D000521 ORTHO05D000384 4.6e-09 64.3 42 69.0
Gorai.010G126100 Gossypium raimondii HOM05D000521 ORTHO05D000384 4.6e-09 64.3 42 69.0
Lj1C531T3 Lonicera japonica HOM05D000521 ORTHO05D000384 4.6e-09 64.3 35 82.9
Lj1C539T3 Lonicera japonica HOM05D000521 ORTHO05D000384 4.6e-09 64.3 35 82.9
Solyc01g044420.4 Solanum lycopersicum HOM05D000521 ORTHO05D000384 4.6e-09 64.3 46 71.7
Sopen01g018570 Solanum pennellii HOM05D000521 ORTHO05D000384 4.6e-09 64.3 46 71.7
Actinidia06845 Actinidia chinensis HOM05D000521 ORTHO05D000384 6.1e-09 63.9 32 93.8
TAR636G1972 Trochodendron aralioides HOM05D000521 ORTHO05D000384 6.1e-09 63.9 64 56.2
TAR623G0641 Trochodendron aralioides HOM05D000521 ORTHO05D000384 7.9e-09 63.5 64 54.7
COL.COLO4_35032 Corchorus olitorius HOM05D000521 ORTHO05D000384 1.0e-08 63.2 43 74.4
Manes.03G098880 Manihot esculenta HOM05D000521 ORTHO05D000384 1.0e-08 63.2 43 67.4
Nn2g15824 Nelumbo nucifera HOM05D000521 ORTHO05D000384 1.0e-08 63.2 42 69.0
PSO339G3650 Papaver somniferum HOM05D000521 ORTHO05D000384 1.0e-08 63.2 46 71.7
BcaB04g18774 Brassica carinata HOM05D000521 ORTHO05D000384 1.4e-08 62.8 33 84.8
BcaC01g03988 Brassica carinata HOM05D000521 ORTHO05D000384 1.4e-08 62.8 33 84.8
A03p38270 Brassica napus HOM05D000521 ORTHO05D000384 1.4e-08 62.8 33 84.8
A05p35800 Brassica napus HOM05D000521 ORTHO05D000384 1.4e-08 62.8 38 76.3
C03p46470 Brassica napus HOM05D000521 ORTHO05D000384 1.4e-08 62.8 33 84.8
BolC3t16911H Brassica oleracea HOM05D000521 ORTHO05D000384 1.4e-08 62.8 33 84.8
BraA03t12980Z Brassica rapa HOM05D000521 ORTHO05D000384 1.4e-08 62.8 33 84.8
Carub.0003s1306 Capsella rubella HOM05D000521 ORTHO05D000384 1.4e-08 62.8 42 71.4
Gohir.A06G103400 Gossypium hirsutum HOM05D000521 ORTHO05D000384 1.4e-08 62.8 42 66.7
Gohir.A08G080100 Gossypium hirsutum HOM05D000521 ORTHO05D000384 1.8e-08 62.4 32 84.4
Gorai.004G094800 Gossypium raimondii HOM05D000521 ORTHO05D000384 1.8e-08 62.4 32 84.4
PGSC0003DMG400031467 Solanum tuberosum HOM05D000521 ORTHO05D000384 1.8e-08 62.4 46 69.6
AT3G13600 Arabidopsis thaliana HOM05D000521 ORTHO05D000384 2.3e-08 62.0 45 66.7
BcaB06g25451 Brassica carinata HOM05D000521 ORTHO05D000384 2.3e-08 62.0 33 84.8
BcaC05g29169 Brassica carinata HOM05D000521 ORTHO05D000384 2.3e-08 62.0 33 84.8
C05p54260 Brassica napus HOM05D000521 ORTHO05D000384 2.3e-08 62.0 33 84.8
BolC5t34091H Brassica oleracea HOM05D000521 ORTHO05D000384 2.3e-08 62.0 33 84.8
Gohir.D13G216700 Gossypium hirsutum HOM05D000521 ORTHO05D000384 2.3e-08 62.0 41 68.3
Gorai.013G247200 Gossypium raimondii HOM05D000521 ORTHO05D000384 2.3e-08 62.0 41 68.3
MD11G1008300 Malus domestica HOM05D000521 ORTHO05D000384 2.3e-08 62.0 43 69.8
TWI34G0573 Tripterygium wilfordii HOM05D000521 ORTHO05D000384 2.3e-08 62.0 31 90.3
AL3G25530 Arabidopsis lyrata HOM05D000521 ORTHO05D000384 3.0e-08 61.6 45 64.4
BcaC09g48355 Brassica carinata HOM05D000521 ORTHO05D000384 3.0e-08 61.6 33 84.8
A01p39990 Brassica napus HOM05D000521 ORTHO05D000384 3.0e-08 61.6 33 84.8
C01p51000 Brassica napus HOM05D000521 ORTHO05D000384 3.0e-08 61.6 33 84.8
BolC1t05063H Brassica oleracea HOM05D000521 ORTHO05D000384 3.0e-08 61.6 33 84.8
BraA01t04040Z Brassica rapa HOM05D000521 ORTHO05D000384 3.0e-08 61.6 33 84.8
Thhalv10022216m.g Eutrema salsugineum HOM05D000521 ORTHO05D000384 3.0e-08 61.6 33 84.8
Potri.001G006200 Populus trichocarpa HOM05D000521 ORTHO05D000384 3.0e-08 61.6 43 69.8
PGR119G0020 Punica granatum HOM05D000521 ORTHO05D000384 3.0e-08 61.6 33 87.9
THA.LOC104815662 Tarenaya hassleriana HOM05D000521 ORTHO05D000384 3.0e-08 61.6 36 77.8
Aa31LG8G790 Aethionema arabicum HOM05D000521 ORTHO05D000384 3.9e-08 61.2 33 84.8
Duzib168G1242 Durio zibethinus HOM05D000521 ORTHO05D000384 3.9e-08 61.2 42 66.7
ECA238G0454 Erigeron canadensis HOM05D000521 ORTHO05D000384 5.1e-08 60.8 63 49.2
THA.LOC104822673 Tarenaya hassleriana HOM05D000521 ORTHO05D000384 5.1e-08 60.8 33 84.8
GSVIVG01025434001 Vitis vinifera HOM05D000521 ORTHO05D000384 5.1e-08 60.8 42 69.0
Manes.15G107100 Manihot esculenta HOM05D000521 ORTHO05D000384 6.7e-08 60.5 43 69.8
Sp3g11800 Schrenkiella parvula HOM05D000521 ORTHO05D000384 6.7e-08 60.5 31 87.1
Eucgr.J01819 Eucalyptus grandis HOM05D000521 ORTHO05D000384 8.8e-08 60.1 33 84.8
MBI01_g20517_MAGBIO Magnolia biondii HOM05D000521 ORTHO05D000384 8.8e-08 60.1 42 66.7
Hund21634 Selenicereus undatus HOM05D000521 ORTHO05D000384 8.8e-08 60.1 33 84.8
Aqoxy2G00458 Aquilegia oxysepala HOM05D000521 ORTHO05D000384 1.1e-07 59.7 44 75.0
Eucgr.B03609 Eucalyptus grandis HOM05D000521 ORTHO05D000384 1.1e-07 59.7 31 87.1
Gohir.A13G212850 Gossypium hirsutum HOM05D000521 ORTHO05D000384 1.1e-07 59.7 41 65.9
Gohir.D08G089900 Gossypium hirsutum HOM05D000521 ORTHO05D000384 1.1e-07 59.7 31 83.9
Sabra16G0065100 Salix brachista HOM05D000521 ORTHO05D000384 1.1e-07 59.7 46 58.7
Sabra16G0065400 Salix brachista HOM05D000521 ORTHO05D000384 1.1e-07 59.7 46 58.7
Nitab4.5_0000254g0020 Nicotiana tabacum HOM05D000521 ORTHO05D000384 1.5e-07 59.3 41 68.3
Solyc01g005800.3 Solanum lycopersicum HOM05D000521 ORTHO05D000384 1.5e-07 59.3 59 55.9
TWI32G0291 Tripterygium wilfordii HOM05D000521 ORTHO05D000384 1.5e-07 59.3 31 83.9
Eucgr.B03610 Eucalyptus grandis HOM05D000521 ORTHO05D000384 2.0e-07 58.9 31 87.1
Nitab4.5_0004534g0010 Nicotiana tabacum HOM05D000521 ORTHO05D000384 2.0e-07 58.9 32 84.4
Oeu059671.1 Olea europaea HOM05D000521 ORTHO05D000384 2.0e-07 58.9 38 78.9
Sabra06G0152000 Salix brachista HOM05D000521 ORTHO05D000384 2.0e-07 58.9 43 65.1
Sc09g0000130 Simmondsia chinensis HOM05D000521 ORTHO05D000384 2.0e-07 58.9 43 67.4
SGA_v2.0_scaffold3G01733 Striga asiatica HOM05D000521 ORTHO05D000384 2.0e-07 58.9 34 79.4
TWI60G1402 Tripterygium wilfordii HOM05D000521 ORTHO05D000384 2.0e-07 58.9 30 90.0
BcaB04g20993 Brassica carinata HOM05D000521 ORTHO05D000384 3.3e-07 58.2 33 81.8
CiPaw.14G135300 Carya illinoinensis HOM05D000521 ORTHO05D000384 4.4e-07 57.8 43 65.1
Dinv25030 Davidia involucrata HOM05D000521 ORTHO05D000384 5.7e-07 57.4 43 60.5
Migut.N00565 Erythranthe guttata HOM05D000521 ORTHO05D000384 5.7e-07 57.4 31 83.9
HanXRQChr14g0437731 Helianthus annuus HOM05D000521 ORTHO05D000384 5.7e-07 57.4 47 57.4
Nitab4.5_0009034g0010 Nicotiana tabacum HOM05D000521 ORTHO05D000384 5.7e-07 57.4 32 81.2
Peaxi162Scf00349g00711 Petunia axillaris HOM05D000521 ORTHO05D000384 5.7e-07 57.4 32 81.2
Sed0004192 Sechium edule HOM05D000521 ORTHO05D000384 5.7e-07 57.4 61 57.4
Sopen01g001800 Solanum pennellii HOM05D000521 ORTHO05D000384 5.7e-07 57.4 41 68.3
CSS0000007 Camellia sinensis var. sinensis HOM05D000521 ORTHO05D000384 7.4e-07 57.0 45 62.2
CANSAT64G2412 Cannabis sativa HOM05D000521 ORTHO05D000384 7.4e-07 57.0 46 56.5
CiPaw.16G086700 Carya illinoinensis HOM05D000521 ORTHO05D000384 7.4e-07 57.0 43 67.4
MD03G1005600 Malus domestica HOM05D000521 ORTHO05D000384 7.4e-07 57.0 43 65.1
Nn7g35894 Nelumbo nucifera HOM05D000521 ORTHO05D000384 7.4e-07 57.0 47 63.8
Nitab4.5_0001730g0160 Nicotiana tabacum HOM05D000521 ORTHO05D000384 7.4e-07 57.0 42 64.3
Sc16g0012140 Simmondsia chinensis HOM05D000521 ORTHO05D000384 7.4e-07 57.0 42 69.0
HanXRQChr02g0057001 Helianthus annuus HOM05D000521 ORTHO05D000384 9.7e-07 56.6 49 63.3
Sed0012677 Sechium edule HOM05D000521 ORTHO05D000384 9.7e-07 56.6 30 86.7
GSVIVG01033423001 Vitis vinifera HOM05D000521 ORTHO05D000384 9.7e-07 56.6 46 60.9
CDE02G2724 Ceratophyllum demersum HOM05D000521 ORTHO05D000384 1.3e-06 56.2 44 61.4
FvH4_3g45350 Fragaria vesca HOM05D000521 ORTHO05D000384 1.3e-06 56.2 43 67.4
FAN11G0291 Fragaria x ananassa HOM05D000521 ORTHO05D000384 1.3e-06 56.2 43 67.4
FAN21G2572 Fragaria x ananassa HOM05D000521 ORTHO05D001415 1.3e-06 56.2 43 67.4
FAN25G1442 Fragaria x ananassa HOM05D000521 ORTHO05D001415 1.3e-06 56.2 43 67.4
Glyma.18G000400 Glycine max HOM05D000521 ORTHO05D000384 1.3e-06 56.2 42 64.3
Lsat_1_v5_gn_6_54340 Lactuca sativa HOM05D000521 ORTHO05D000384 1.3e-06 56.2 42 69.0
Manes.09G040800 Manihot esculenta HOM05D000521 ORTHO05D000384 1.3e-06 56.2 42 59.5
Prupe.6G005400 Prunus persica HOM05D000521 ORTHO05D000384 1.3e-06 56.2 43 65.1
CAN.G158.27 Capsicum annuum HOM05D000521 ORTHO05D000384 1.7e-06 55.8 32 81.2
Ca_16380_v3 Cicer arietinum L. HOM05D000521 ORTHO05D000384 1.7e-06 55.8 31 80.6
ClCG03G012370 Citrullus lanatus HOM05D000521 ORTHO05D000384 1.7e-06 55.8 30 83.3
HanXRQChr13g0405341 Helianthus annuus HOM05D000521 ORTHO05D000384 2.2e-06 55.5 30 83.3
FAN16G3718 Fragaria x ananassa HOM05D000521 ORTHO05D001415 2.8e-06 55.1 29 86.2
Lalb_Chr12g0205251 Lupinus albus HOM05D000521 ORTHO05D000384 2.8e-06 55.1 42 69.0
RcHm_v2.0_Chr5g0083171 Rosa chinensis HOM05D000521 ORTHO05D000384 2.8e-06 55.1 29 86.2
arahy.Tifrunner.gnm1.ann1.8XK85C Arachis hypogaea HOM05D000521 ORTHO05D000384 3.7e-06 54.7 31 80.6
arahy.Tifrunner.gnm1.ann1.VMU3NF Arachis hypogaea HOM05D000521 ORTHO05D000384 3.7e-06 54.7 31 80.6
AUR62019177 Chenopodium quinoa HOM05D000521 ORTHO05D000384 3.7e-06 54.7 54 57.4
MELO3C015088.2 Cucumis melo HOM05D000521 ORTHO05D000384 3.7e-06 54.7 30 83.3
Lalb_Chr07g0186581 Lupinus albus HOM05D000521 ORTHO05D000384 3.7e-06 54.7 31 80.6
Hund07583 Selenicereus undatus HOM05D000521 ORTHO05D000384 3.7e-06 54.7 26 96.2
HPP92_024830 Vanilla planifolia HOM05D000521 ORTHO05D000384 3.7e-06 54.7 38 68.4
HPP92_026631 Vanilla planifolia HOM05D000521 ORTHO05D000384 3.7e-06 54.7 38 68.4
Cpa.g.sc85.13 Carica papaya HOM05D000521 ORTHO05D000384 4.8e-06 54.3 42 61.9
Cfa020112 Carpinus fangiana HOM05D000521 ORTHO05D000384 4.8e-06 54.3 43 58.1
CsaV3_1G043640 Cucumis sativus L. HOM05D000521 ORTHO05D000384 4.8e-06 54.3 30 83.3
HanXRQChr02g0041991 Helianthus annuus HOM05D000521 ORTHO05D000384 4.8e-06 54.3 28 89.3
Psat7g071920 Pisum sativum HOM05D000521 ORTHO05D000384 4.8e-06 54.3 31 80.6
SalBow6G6619 Salvia bowleyana HOM05D000521 ORTHO05D000384 4.8e-06 54.3 26 92.3
VMungo0251G1091 Vigna mungo HOM05D000521 ORTHO05D000384 4.8e-06 54.3 31 80.6
Duzib128G1234 Durio zibethinus HOM05D000521 ORTHO05D000384 6.3e-06 53.9 43 60.5
Nitab4.5_0001730g0170 Nicotiana tabacum HOM05D000521 ORTHO05D000384 6.3e-06 53.9 42 61.9
Potri.006G197500 Populus trichocarpa HOM05D000521 ORTHO05D000384 6.3e-06 53.9 43 58.1
SHI31286 Sapria himalayana HOM05D000521 ORTHO05D000384 6.3e-06 53.9 27 85.2


User provided reference genes

Program Settings