Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1716.0 851 100.0
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1507.3 850 87.5
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1437.2 876 83.7
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1432.5 852 84.3
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1420.6 845 84.3
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1412.5 839 84.3
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1409.4 853 83.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1404.8 846 82.7
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1404.4 839 83.7
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1404.0 848 83.1
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1403.7 839 83.7
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1403.3 852 83.0
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1401.3 851 83.1
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1399.4 834 84.4
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1394.8 835 84.0
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1394.4 835 84.0
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1393.6 835 84.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1392.9 850 82.6
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1391.3 843 83.2
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1389.4 843 83.3
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1387.1 852 81.9
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1383.6 850 82.0
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1382.5 829 83.2
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1382.5 839 82.6
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1382.1 843 82.8
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1378.6 850 82.0
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1377.8 855 81.4
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1377.5 843 82.6
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1376.3 834 83.6
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1375.5 849 81.6
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1374.0 851 81.0
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1372.8 813 84.7
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1372.5 850 81.6
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1372.1 845 81.3
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 864 80.7
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1365.9 852 80.9
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1365.1 849 80.9
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1364.0 830 82.3
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 831 82.8
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1362.4 849 81.6
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1361.7 831 81.7
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1361.7 849 81.0
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1360.9 839 81.5
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1359.7 844 81.4
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1358.6 830 81.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 805 83.9
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 850 80.7
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1357.4 851 80.7
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1355.9 844 81.2
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1354.0 851 80.6
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 837 81.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1351.7 834 80.6
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1349.7 834 80.6
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1349.7 832 81.6
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1349.0 838 81.0
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1348.2 838 81.1
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1345.1 803 83.8
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1345.1 845 80.7
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 839 81.6
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1342.0 865 75.3
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 824 81.6
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1340.1 843 80.4
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1339.7 852 79.6
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1337.8 831 80.9
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1337.0 851 79.9
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1333.9 823 81.0
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1330.9 817 82.0
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 834 79.7
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 782 86.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1328.9 818 81.4
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 875 78.1
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 880 76.9
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1322.4 822 80.7
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1319.7 844 80.0
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 847 78.4
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 852 79.2
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 833 79.2
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 841 79.7
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1315.8 850 78.4
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 817 81.5
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 817 80.9
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 815 80.5
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1306.2 849 77.7
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1305.4 817 80.4
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1304.3 884 77.4
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1304.3 833 79.4
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 853 78.3
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 847 77.6
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1300.0 837 79.2
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 834 78.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 853 76.7
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 851 77.7
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1293.9 815 79.3
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 820 79.0
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 849 77.6
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 847 77.0
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 830 78.8
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 830 78.8
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 830 78.8
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 821 78.8
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 821 78.3
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 838 77.3
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 850 76.4
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 836 77.9
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 852 76.2
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 852 76.2
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 852 76.2
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 852 76.2
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 821 78.2
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1278.8 891 73.2
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 821 78.1
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1278.1 831 78.5
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 873 75.3
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1266.1 827 77.9
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1264.2 827 77.8
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 818 77.1
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 782 81.5
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1250.0 830 76.9
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1246.5 824 77.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1245.7 814 77.9
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1244.6 832 76.1
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1240.7 847 70.8
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1238.4 820 77.4
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 840 76.5
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 830 76.0
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1227.2 821 76.1
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1226.8 812 75.4
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1219.9 849 75.0
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1219.1 838 74.9
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 814 75.7
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1211.1 837 74.7
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1197.2 738 82.2
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1188.3 695 84.3
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1187.2 900 69.2
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1184.9 758 78.9
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1174.8 827 74.6
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1169.8 812 72.3
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1165.6 819 71.8
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1160.2 772 74.7
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1150.6 813 72.0
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1139.8 824 70.4
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1088.9 612 85.6
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1085.9 837 70.4
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.9e-282 974.9 845 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.3e-274 949.1 627 71.1
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.4e-268 929.9 512 86.9
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.3e-264 916.8 584 75.7
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 6.0e-259 897.9 545 84.2
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.9e-192 676.4 708 55.8
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.2e-168 597.0 328 88.4
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 9.0e-154 548.5 360 81.4
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 4.2e-151 539.7 460 59.1
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 6.3e-107 392.9 314 70.1
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 8.0e-102 375.9 271 69.7
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.3e-99 365.9 397 53.7
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.8e-93 346.3 582 46.0
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.7e-59 235.3 153 77.1
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 6.6e-56 223.4 141 74.5
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 5.3e-45 187.2 163 57.7
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.6e-39 166.4 130 66.9
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 2.9e-35 154.8 504 29.0
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.3e-32 146.0 461 28.2
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 9.6e-31 139.8 76 85.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.8e-30 137.5 473 27.1
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.3e-27 129.4 68 91.2
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.1e-26 126.3 436 27.8
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.1e-25 122.1 96 67.7
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 3.0e-24 118.2 489 27.2
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.1e-21 109.8 68 70.6
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-16 92.8 266 28.6
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-16 91.3 220 31.4
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 6.3e-14 84.0 145 37.2
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 8.2e-14 83.6 83 50.6
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 1.0e-08 66.6 141 34.8
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-08 64.3 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.2e-06 58.9 38 73.7


User provided reference genes

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