Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.2e-255 885.2 465 100.0
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.3e-251 871.3 465 98.3
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.0e-220 770.0 476 80.9
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 1.3e-207 726.5 396 87.9
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 3.8e-207 724.9 396 87.4
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.2e-205 719.9 467 77.7
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 8.0e-205 717.2 483 77.4
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 6.1e-197 691.0 465 74.2
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 2.5e-190 669.1 396 81.1
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.4e-185 653.3 469 70.4
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.4e-185 653.3 473 68.7
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 4.1e-185 651.7 469 69.5
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.2e-184 650.2 469 73.8
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 3.5e-184 648.7 472 72.2
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.3e-183 646.7 468 72.0
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 1.1e-182 643.7 468 69.2
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 1.9e-182 642.9 463 73.4
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 5.6e-182 641.3 465 68.8
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 7.3e-182 641.0 471 67.5
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 9.5e-182 640.6 465 68.6
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.2e-181 640.2 474 72.6
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 2.1e-181 639.4 468 69.9
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 3.6e-181 638.6 471 67.1
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 4.7e-181 638.3 485 66.4
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 4.7e-181 638.3 471 67.3
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 6.1e-181 637.9 473 67.7
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 8.0e-181 637.5 466 69.5
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 8.0e-181 637.5 477 69.0
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 3.1e-180 635.6 467 67.7
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 8.9e-180 634.0 471 66.9
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.0e-179 632.9 470 72.3
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 4.4e-179 631.7 476 67.9
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 7.5e-179 630.9 479 66.8
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 7.5e-179 630.9 378 78.3
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.2e-178 629.4 466 68.5
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 6.4e-178 627.9 471 66.9
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 6.4e-178 627.9 385 76.9
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 8.3e-178 627.5 469 68.2
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 2.0e-176 622.9 465 69.2
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.0e-176 622.9 465 67.1
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 2.7e-176 622.5 465 66.9
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 4.6e-176 621.7 467 67.9
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 7.8e-176 620.9 472 66.5
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 1.3e-175 620.2 465 67.7
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 2.3e-175 619.4 465 65.2
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 3.9e-175 618.6 465 66.2
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 1.1e-174 617.1 458 67.9
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 1.9e-174 616.3 415 72.3
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 2.5e-174 615.9 386 73.8
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.3e-174 615.1 476 67.0
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 4.3e-174 615.1 468 67.1
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 9.5e-174 614.0 384 73.2
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 1.6e-173 613.2 368 79.1
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 2.1e-173 612.8 406 71.9
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 1.1e-172 610.5 392 74.0
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 3.1e-172 609.0 471 68.6
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 5.2e-172 608.2 471 65.0
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 1.2e-171 607.1 465 64.3
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 1.7e-170 603.2 392 71.4
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 2.9e-170 602.4 335 83.6
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.9e-170 602.4 404 73.3
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 3.7e-170 602.1 394 71.8
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 8.3e-170 600.9 394 73.4
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.9e-169 599.7 389 74.0
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 1.2e-168 597.0 484 62.0
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 1.2e-168 597.0 389 73.3
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 2.1e-168 596.3 389 74.0
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.3e-167 592.8 381 74.0
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 1.1e-166 590.5 389 73.0
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 1.5e-166 590.1 485 65.8
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 3.3e-166 589.0 390 73.3
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 4.3e-166 588.6 466 65.9
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 7.3e-166 587.8 389 73.3
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 9.5e-166 587.4 428 68.9
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.2e-165 587.0 484 66.3
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 2.1e-165 586.3 420 70.2
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 4.7e-165 585.1 389 73.3
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 1.1e-164 583.9 465 64.1
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.5e-163 580.1 401 71.3
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 9.9e-163 577.4 474 62.7
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 6.4e-162 574.7 368 73.1
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.1e-160 569.7 466 62.2
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 6.0e-160 568.2 368 70.1
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 4.3e-158 562.0 414 68.1
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 4.3e-158 562.0 442 62.4
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 5.6e-158 561.6 372 71.0
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 5.6e-158 561.6 334 77.2
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 2.2e-154 549.7 520 57.9
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 1.9e-150 536.6 460 62.8
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 8.1e-149 531.2 334 75.7
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 5.3e-148 528.5 398 66.1
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 9.3e-145 517.7 318 75.8
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.0e-143 514.2 464 60.1
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 3.0e-143 512.7 389 66.8
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.3e-142 508.8 384 64.8
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.8e-140 503.4 431 60.6
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 4.2e-137 492.3 281 82.6
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 5.6e-134 481.9 385 61.8
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 4.8e-133 478.8 389 66.6
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 8.4e-130 468.0 468 55.3
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 2.7e-128 463.0 433 59.4
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 4.6e-128 462.2 468 55.1
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 2.1e-125 453.4 358 60.6
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 7.9e-120 434.9 274 77.7
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 1.1e-118 431.0 468 52.8
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 2.5e-118 429.9 342 68.7
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 2.5e-97 360.1 217 74.7
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 2.1e-96 357.1 332 59.9
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 2.3e-95 353.6 209 77.5
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 4.5e-91 339.3 361 49.9
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 7.7e-91 338.6 384 46.4
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.0e-90 335.9 312 58.7
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 3.5e-83 313.2 387 43.2
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 3.6e-80 303.1 175 81.1
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 8.8e-79 298.5 172 80.8
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 6.6e-74 282.3 267 58.4
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.1e-73 281.6 267 58.1
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 5.6e-73 279.3 259 58.7
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 3.6e-72 276.6 279 47.7
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.8e-71 274.2 262 57.3
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 2.6e-70 270.4 263 55.1
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.5e-65 254.6 229 69.0
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 1.4e-60 238.0 178 68.0
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 4.7e-56 223.0 292 43.2
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 4.0e-47 193.4 277 44.8
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 6.2e-40 169.5 95 81.1
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 4.9e-37 159.8 140 62.9
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.6e-35 154.8 225 42.7
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 5.1e-34 149.8 88 77.3
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 5.3e-31 139.8 101 67.3
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 1.9e-28 131.3 75 81.3
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 3.3e-25 120.6 364 30.2
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 4.0e-23 113.6 130 48.5
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.5e-22 111.7 63 84.1
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.7e-21 108.2 69 73.9
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 6.9e-15 86.3 71 63.4
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 4.5e-14 83.6 63 63.5
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 1.6e-11 75.1 56 62.5
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 6.7e-10 69.7 81 42.0
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 7.4e-09 66.2 39 71.8
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 2.4e-07 61.2 32 90.6
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 1.2e-06 58.9 52 53.8
Lsat_1_v5_gn_3_115920 Lactuca sativa HOM05D005258 ORTHO05D006525 2.6e-06 57.8 97 40.2


User provided reference genes

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