Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 4.9e-177 624.4 322 100.0
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.9e-125 453.0 317 73.5
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 7.2e-120 434.5 317 71.6
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 2.9e-113 412.5 319 70.2
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 2.9e-113 412.5 319 68.0
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.1e-112 410.6 320 67.5
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.6e-103 380.2 318 64.5
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 9.1e-99 364.4 318 60.4
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 6.5e-97 358.2 321 59.2
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 4.2e-96 355.5 320 61.6
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.6e-95 353.6 320 58.8
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 2.7e-90 336.3 311 60.1
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.7e-89 333.6 319 57.7
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 2.2e-89 333.2 330 58.2
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 8.5e-89 331.3 318 56.0
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.5e-88 329.7 318 55.0
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 4.2e-88 328.9 318 55.0
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 4.2e-88 328.9 318 55.0
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 2.1e-87 326.6 316 58.5
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 3.6e-87 325.9 325 55.7
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 6.1e-87 325.1 318 58.2
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 2.0e-85 320.1 306 58.5
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 3.4e-85 319.3 320 58.4
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 5.4e-83 312.0 301 56.8
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 7.7e-82 308.1 335 51.3
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 7.7e-82 308.1 335 51.3
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.7e-81 307.0 322 55.3
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 3.8e-81 305.8 319 57.1
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 5.0e-81 305.4 307 56.4
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 8.5e-81 304.7 308 55.8
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 3.6e-79 299.3 297 55.2
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 4.7e-79 298.9 320 51.6
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 1.0e-78 297.7 323 53.6
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.8e-78 297.0 313 55.0
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 5.2e-78 295.4 321 53.6
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 9.8e-77 291.2 302 57.3
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.8e-76 289.7 322 52.2
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 6.3e-76 288.5 295 54.9
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 8.3e-76 288.1 320 50.9
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 1.1e-75 287.7 316 53.2
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.1e-75 287.7 303 56.4
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 1.8e-75 287.0 314 55.1
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.1e-75 286.2 342 54.1
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 5.4e-75 285.4 313 54.3
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 7.0e-75 285.0 306 55.2
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.6e-74 283.9 306 55.2
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 3.5e-74 282.7 308 51.6
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 5.9e-74 282.0 306 54.9
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.3e-73 280.0 306 55.9
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 1.1e-72 277.7 310 49.7
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 1.5e-72 277.3 301 54.2
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 1.5e-72 277.3 304 53.0
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 3.6e-71 272.7 327 48.9
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 1.0e-70 271.2 300 52.3
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 4.0e-70 269.2 315 50.2
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 1.5e-69 267.3 302 51.0
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 2.0e-69 266.9 320 51.6
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.4e-69 266.2 300 51.3
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 4.4e-69 265.8 303 50.8
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 7.5e-69 265.0 356 45.2
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 7.5e-69 265.0 320 49.4
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 7.5e-69 265.0 301 51.2
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 1.3e-68 264.2 307 49.2
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 2.9e-68 263.1 311 50.2
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.1e-67 261.2 319 49.2
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 7.0e-67 258.5 300 50.3
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.2e-66 257.7 298 50.3
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 2.0e-66 256.9 300 49.3
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.7e-66 256.5 312 49.4
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 5.9e-66 255.4 285 53.0
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.0e-65 254.6 315 48.6
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 1.3e-65 254.2 291 50.2
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 2.5e-64 250.0 299 51.2
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 4.3e-64 249.2 296 52.0
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 7.3e-64 248.4 298 51.3
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 1.2e-63 247.7 293 49.1
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 1.6e-63 247.3 299 48.5
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 1.6e-63 247.3 296 49.3
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 6.2e-63 245.4 304 47.4
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 8.0e-63 245.0 256 53.5
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 8.0e-63 245.0 311 46.0
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.8e-62 243.8 311 46.3
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 1.8e-62 243.8 292 49.3
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 5.2e-62 242.3 313 47.6
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 5.2e-62 242.3 310 49.7
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.2e-61 241.1 281 47.3
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 1.5e-61 240.7 330 45.8
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 3.4e-61 239.6 308 48.1
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 9.8e-61 238.0 299 47.2
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.7e-60 237.3 306 47.7
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.7e-60 237.3 264 51.1
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 4.9e-60 235.7 311 45.3
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 6.4e-60 235.3 315 47.0
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 8.3e-60 235.0 255 54.5
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 8.3e-60 235.0 303 45.2
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.4e-59 234.2 299 47.5
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 1.9e-59 233.8 316 47.2
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 2.4e-59 233.4 311 45.0
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 4.1e-59 232.6 299 47.2
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 9.2e-59 231.5 314 46.5
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 9.2e-59 231.5 307 45.3
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 2.0e-58 230.3 313 45.7
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 2.7e-58 229.9 314 45.9
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 3.5e-58 229.6 302 45.7
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 6.0e-58 228.8 314 46.5
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 7.8e-58 228.4 304 46.4
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 3.0e-57 226.5 330 43.9
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 8.6e-57 224.9 316 46.2
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 1.5e-56 224.2 297 46.1
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 2.1e-55 220.3 316 45.9
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 2.1e-55 220.3 316 45.9
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 1.8e-54 217.2 302 43.4
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 1.2e-53 214.5 199 60.8
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.0e-53 213.8 305 45.6
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 2.0e-53 213.8 305 45.6
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 2.3e-49 200.3 312 42.3
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 4.0e-46 189.5 282 42.9
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.6e-40 169.1 279 40.1
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 7.3e-40 168.7 279 40.1
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 2.9e-36 156.8 165 52.7
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 5.4e-35 152.5 143 62.2
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 1.5e-32 144.4 206 43.2
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 4.8e-31 139.4 281 36.3
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 4.9e-28 129.4 176 46.0
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 9.3e-27 125.2 118 60.2
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 3.7e-15 86.7 263 29.3
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.2e-12 77.4 168 35.7
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 3.8e-12 76.6 127 44.1
Actinidia26538 Actinidia chinensis HOM05D006030 ORTHO05D007475 6.5e-12 75.9 102 47.1
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 1.3e-07 61.6 86 40.7


User provided reference genes

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