Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.9e-99 364.8 182 100.0
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.1e-96 356.7 182 96.2
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 2.4e-96 355.5 182 95.6
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 4.1e-96 354.8 182 95.6
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 3.4e-95 351.7 182 95.1
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 1.3e-94 349.7 182 94.5
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.7e-94 349.4 182 94.5
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 2.2e-94 349.0 182 94.5
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 2.2e-94 349.0 182 94.0
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 2.2e-94 349.0 180 95.6
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 6.5e-94 347.4 182 93.4
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 8.5e-94 347.1 182 93.4
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.1e-93 346.7 182 93.4
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-93 346.7 177 96.0
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.1e-93 346.7 182 91.2
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.9e-93 345.9 182 94.0
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.5e-93 345.5 182 92.9
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.5e-93 345.5 182 92.9
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.2e-93 345.1 182 92.3
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 3.2e-93 345.1 178 94.9
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 3.2e-93 345.1 180 93.3
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 92.3
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 92.3
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 92.3
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 92.3
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 5.5e-93 344.4 182 92.3
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 5.5e-93 344.4 182 93.4
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 5.5e-93 344.4 182 92.9
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 91.2
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 91.8
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 91.8
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.3
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 91.2
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.2e-92 343.2 181 92.8
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 92.3
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 92.3
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 92.9
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 92.9
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 4.7e-92 341.3 179 93.3
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 90.7
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 7.9e-92 340.5 202 85.6
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.0e-91 340.1 176 94.3
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 90.7
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 92.3
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 91.2
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.3e-91 339.0 176 93.8
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 90.1
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 90.1
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 90.7
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 89.6
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 90.7
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 88.5
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 90.7
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 89.6
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 2.6e-90 335.5 182 89.6
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 90.7
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 9.7e-90 333.6 181 87.8
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 2.2e-89 332.4 176 93.8
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 2.2e-89 332.4 182 87.4
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 2.8e-89 332.0 178 90.4
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 3.7e-89 331.6 178 90.4
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 3.7e-89 331.6 197 85.3
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.4e-88 329.7 179 88.3
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.4e-88 329.7 182 90.7
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 5.3e-88 327.8 173 91.9
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 7.0e-88 327.4 179 88.3
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 9.1e-88 327.0 172 92.4
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 1.2e-87 326.6 176 89.8
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.0e-87 325.9 172 93.6
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 3.5e-87 325.1 182 86.3
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 2.2e-86 322.4 194 82.5
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 2.9e-86 322.0 173 90.2
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.9e-86 322.0 182 85.7
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 3.8e-86 321.6 176 88.1
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 85.7
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 3.2e-85 318.5 182 85.2
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 5.5e-85 317.8 182 85.2
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 84.6
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 83.5
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 2.7e-84 315.5 178 88.8
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.7e-84 315.5 178 86.5
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 6.1e-84 314.3 182 84.1
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 6.1e-84 314.3 182 84.1
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 4.0e-83 311.6 182 85.2
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 5.2e-83 311.2 182 83.0
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 5.7e-82 307.8 177 84.2
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 1.3e-81 306.6 208 76.4
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.4e-80 302.4 182 85.2
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 5.3e-80 301.2 174 83.3
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 7.0e-80 300.8 173 83.8
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 9.1e-80 300.4 174 83.3
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 9.1e-80 300.4 174 83.3
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 2.0e-79 299.3 174 82.8
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 2.7e-79 298.9 174 82.8
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.9e-77 292.7 153 90.2
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 7.2e-77 290.8 182 79.7
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 9.4e-77 290.4 149 92.6
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 1.6e-76 289.7 155 91.6
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 6.1e-76 287.7 155 92.3
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 6.1e-76 287.7 182 78.6
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 3.0e-75 285.4 177 80.2
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 3.0e-75 285.4 151 92.7
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 1.2e-74 283.5 183 78.7
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 8.3e-73 277.3 155 86.5
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.0e-67 260.4 155 82.6
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 1.8e-67 259.6 128 96.9
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 5.2e-67 258.1 181 74.6
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 3.4e-66 255.4 184 75.0
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 1.7e-65 253.1 130 93.1
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.8e-64 249.6 139 84.2
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 3.3e-61 238.8 126 88.9
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 8.0e-60 234.2 184 60.9
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 4.9e-57 224.9 177 59.9
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 5.4e-56 221.5 181 66.9
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 7.0e-56 221.1 185 59.5
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.0e-51 207.2 105 94.3
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.4e-51 206.8 105 95.2
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.8e-51 206.5 105 94.3
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 4.4e-50 201.8 105 91.4
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 6.0e-47 191.4 101 89.1
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 6.6e-46 188.0 100 91.0
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 1.5e-45 186.8 179 60.3
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 8.1e-44 181.0 154 64.9
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 8.3e-41 171.0 92 90.2
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.2e-39 167.2 86 91.9
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 3.5e-39 165.6 92 85.9
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.9e-37 159.8 91 79.1
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 7.6e-34 147.9 127 58.3
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 2.4e-32 142.9 87 80.5
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.2e-32 142.5 92 79.3
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 9.6e-29 131.0 66 92.4
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.6e-26 121.3 70 88.6
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 6.4e-25 118.2 77 77.9
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 5.3e-19 98.6 49 91.8
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 4.6e-15 85.5 182 31.3
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.3e-14 83.2 182 30.8
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.5e-13 80.5 182 31.3
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.9e-13 80.1 182 31.9
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.5e-13 79.7 182 30.2
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 4.3e-13 79.0 181 30.9
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 4.3e-13 79.0 49 77.6
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 9.6e-13 77.8 182 30.8
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.3e-12 77.4 182 29.1
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.6e-12 77.0 182 29.1
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.6e-12 77.0 182 29.7
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 2.1e-12 76.6 185 28.6
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.1e-12 76.6 182 30.2
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.8e-12 76.3 182 30.8
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.8e-12 76.3 52 65.4
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 3.6e-12 75.9 182 29.7
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 8.1e-12 74.7 183 26.8
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 8.1e-12 74.7 182 29.1
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.4e-11 73.9 182 29.7
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 3.1e-11 72.8 181 28.2
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 3.1e-11 72.8 182 29.1
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 4.0e-11 72.4 181 27.6
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 4.0e-11 72.4 181 29.3
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 5.3e-11 72.0 182 29.1
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 5.3e-11 72.0 182 28.6
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 6.9e-11 71.6 182 27.5
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 9.0e-11 71.2 182 29.1
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.5e-10 70.5 182 28.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 9.9e-10 67.8 180 31.1
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.7e-09 67.0 159 28.9
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.9e-09 65.5 198 25.3
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 6.4e-09 65.1 137 31.4
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.3e-06 57.4 133 29.3


User provided reference genes

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