Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.7e-233 812.4 422 100.0
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.5e-221 772.7 422 96.0
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.7e-103 379.8 428 55.8
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.7e-97 360.5 437 54.2
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 3.3e-88 329.7 402 51.7
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 2.8e-84 316.6 440 48.2
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 9.5e-80 301.6 440 48.2
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 3.0e-78 296.6 433 50.1
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 3.5e-66 256.5 314 52.5
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.3e-62 243.8 447 38.9
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 3.1e-62 243.4 415 40.5
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 3.5e-58 229.9 458 38.6
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.9e-56 224.2 421 40.1
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 4.2e-51 206.5 406 38.7
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 5.4e-51 206.1 452 37.8
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.7e-50 203.8 442 37.6
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 5.6e-48 196.1 402 36.8
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 7.3e-48 195.7 387 39.0
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 9.6e-48 195.3 402 36.6
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 1.6e-47 194.5 433 36.0
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.4e-46 190.7 435 36.8
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 6.9e-46 189.1 414 37.0
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 1.5e-45 188.0 400 35.8
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.4e-45 186.8 402 35.8
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 4.4e-45 186.4 438 34.0
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 6.4e-44 182.6 415 36.9
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 6.4e-44 182.6 439 37.6
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 5.4e-43 179.5 456 34.9
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 7.1e-43 179.1 417 36.0
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 7.1e-43 179.1 384 37.5
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 2.1e-42 177.6 402 37.1
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 2.1e-39 167.5 417 32.4
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 2.0e-37 161.0 401 32.9
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.6e-37 160.6 407 33.9
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 2.6e-37 160.6 317 40.4
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.7e-36 157.9 447 31.5
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 2.2e-36 157.5 395 32.7
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.2e-36 157.5 407 33.4
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 2.9e-36 157.1 399 33.3
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.1e-35 155.2 408 32.1
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 4.6e-34 149.8 414 31.2
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 3.0e-33 147.1 412 31.1
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.1e-33 146.4 408 31.1
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 6.7e-33 146.0 434 34.1
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 1.1e-32 145.2 408 31.1
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 1.1e-32 145.2 431 32.7
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 9.6e-32 142.1 415 32.5
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 1.6e-31 141.4 419 31.3
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.6e-31 141.4 428 32.2
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 3.7e-31 140.2 407 30.7
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 3.1e-30 137.1 410 33.4
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.1e-30 137.1 409 32.3
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 4.0e-30 136.7 425 31.1
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.0e-29 134.4 431 32.9
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.6e-29 134.0 406 31.0
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 3.4e-29 133.7 416 33.9
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 5.8e-29 132.9 423 30.3
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 5.8e-29 132.9 432 33.6
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.3e-28 131.7 446 29.4
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 8.4e-28 129.0 408 32.1
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 3.2e-27 127.1 405 30.4
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 1.6e-26 124.8 421 29.9
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 1.6e-26 124.8 408 32.8
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 2.1e-26 124.4 392 30.9
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 2.7e-26 124.0 438 29.5
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.5e-26 123.6 479 31.5
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 4.6e-26 123.2 391 29.9
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 6.0e-26 122.9 449 28.3
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 6.0e-26 122.9 425 31.1
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 7.9e-26 122.5 410 30.5
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 1.8e-25 121.3 409 31.5
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 4.8e-23 113.2 400 29.0
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 3.1e-22 110.5 399 31.6
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 4.0e-22 110.2 406 28.1
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.5e-21 108.2 401 29.7
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.5e-21 108.2 417 27.1
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 5.8e-21 106.3 399 30.1
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 1.0e-20 105.5 417 28.1
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.3e-20 105.1 423 28.6
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 1.4e-19 101.7 409 28.1
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 3.2e-19 100.5 425 28.7
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 4.2e-19 100.1 409 30.1
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 5.5e-19 99.8 419 29.6
ECA236G2409 Erigeron canadensis HOM05D000674 ORTHO05D001490 9.3e-19 99.0 355 29.9
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 1.6e-18 98.2 417 28.8
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 2.7e-18 97.4 186 40.3
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 2.7e-18 97.4 431 28.1
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.5e-18 97.1 437 26.3
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 3.5e-18 97.1 443 28.7
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 1.0e-17 95.5 404 28.0
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.0e-17 95.5 399 27.6
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 3.9e-17 93.6 417 29.3
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 5.1e-17 93.2 390 28.5
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.5e-16 91.7 419 26.3
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 1.9e-16 91.3 426 27.2
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 1.9e-16 91.3 426 27.2
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 2.5e-16 90.9 411 29.0
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 9.7e-16 89.0 435 27.4
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 9.7e-16 89.0 405 27.7
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.3e-15 88.6 423 26.7
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.3e-15 88.6 420 26.9
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.6e-15 88.2 270 32.2
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 4.8e-15 86.7 433 27.3
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 4.8e-15 86.7 409 24.2
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 8.2e-15 85.9 275 32.7
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 1.1e-14 85.5 416 27.9
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 1.8e-14 84.7 424 26.4
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.1e-14 84.0 400 27.8
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 9.0e-14 82.4 436 27.3
HanXRQChr05g0135801 Helianthus annuus HOM05D003726 ORTHO05D003520 1.2e-13 82.0 277 31.4
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 1.5e-13 81.6 373 29.5
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.9e-13 79.7 424 28.5
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 5.9e-13 79.7 433 25.6
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 7.7e-13 79.3 370 30.0
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 7.7e-13 79.3 409 25.7
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 7.7e-13 79.3 441 26.8
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 7.7e-13 79.3 428 26.2
Ca_05609_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 1.3e-12 78.6 283 29.0
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 2.2e-12 77.8 407 26.5
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.8e-12 77.0 435 28.5
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 3.8e-12 77.0 420 26.0
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 5.0e-12 76.6 397 26.2
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 6.5e-12 76.3 416 26.9
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 6.5e-12 76.3 317 29.3
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.1e-11 75.5 166 34.9
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 1.4e-11 75.1 372 26.3
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 1.9e-11 74.7 416 26.9
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 2.5e-11 74.3 348 29.0
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 2.5e-11 74.3 439 26.4
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 2.5e-11 74.3 415 26.7
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 2.5e-11 74.3 421 24.5
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 5.5e-11 73.2 418 26.3
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 9.4e-11 72.4 424 27.8
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.2e-10 72.0 367 25.6
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 2.7e-10 70.9 434 27.4
MSTRG.12680 Avicennia marina HOM05D003726 ORTHO05D003520 6.1e-10 69.7 397 27.0
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.0e-09 67.4 399 25.8
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 3.9e-09 67.0 420 25.7
FAN21G2593 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.7e-09 66.2 112 42.9
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 6.7e-09 66.2 409 25.4
Carub.0008s1925 Capsella rubella HOM05D011448 ORTHO05D003520 8.8e-09 65.9 339 26.8
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 8.8e-09 65.9 424 25.2
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.1e-08 65.5 192 31.8
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.1e-08 65.5 409 27.4
Medtr5g071090 Medicago truncatula HOM05D003726 ORTHO05D003520 2.5e-08 64.3 281 27.0
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 2.5e-08 64.3 243 28.4
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 2.5e-08 64.3 366 24.0
HPP92_013884 Vanilla planifolia HOM05D003726 ORTHO05D003520 3.3e-08 63.9 408 24.8
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 5.7e-08 63.2 247 27.9
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 5.7e-08 63.2 247 27.9
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 9.7e-08 62.4 411 25.8
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 9.7e-08 62.4 168 32.7
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.2e-07 61.2 411 26.0
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 2.8e-07 60.8 423 27.0
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 2.8e-07 60.8 419 25.8
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 2.8e-07 60.8 297 27.6
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 3.7e-07 60.5 423 27.0
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.7e-07 60.5 358 26.3
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 3.7e-07 60.5 398 23.6
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 4.8e-07 60.1 192 31.2
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 4.8e-07 60.1 152 33.6
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 8.2e-07 59.3 409 26.9
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.8e-06 58.2 358 26.0
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 2.4e-06 57.8 227 29.5
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 3.1e-06 57.4 437 24.9
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 3.1e-06 57.4 420 26.7
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 6.9e-06 56.2 401 27.4
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 9.1e-06 55.8 224 29.5


User provided reference genes

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