Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008666 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 8.1e-193 676.8 315 100.0
CSS0014327 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 3.1e-192 674.9 315 99.7
CSS0008734 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 2.9e-190 668.3 315 98.4
CSS0006449 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 2.5e-170 602.1 315 88.6
CSS0006319 Camellia sinensis var. sinensis HOM05D007560 ORTHO05D005947 1.3e-155 553.1 315 84.8
Rhsim11G0103500 Rhododendron simsii HOM05D007560 ORTHO05D005947 5.3e-59 232.3 385 36.6
Rhsim11G0104000 Rhododendron simsii HOM05D007560 ORTHO05D005947 5.8e-58 228.8 385 35.6
Rhsim11G0104400 Rhododendron simsii HOM05D007560 ORTHO05D005947 1.1e-56 224.6 385 36.6
Rhsim11G0103900 Rhododendron simsii HOM05D007560 ORTHO05D005947 7.9e-55 218.4 290 40.0
Lj5C320G6 Lonicera japonica HOM05D007560 ORTHO05D005947 1.2e-50 204.5 372 33.3
Actinidia16920 Actinidia chinensis HOM05D007560 ORTHO05D005947 2.0e-50 203.8 297 41.1
Rhsim11G0103700 Rhododendron simsii HOM05D007560 ORTHO05D005947 1.2e-42 177.9 219 40.6
Lj5C321T2 Lonicera japonica HOM05D007560 ORTHO05D005947 2.2e-41 173.7 399 30.8
Lj5C336T5 Lonicera japonica HOM05D007560 ORTHO05D005947 5.5e-40 169.1 394 30.5
Lj6C390T13 Lonicera japonica HOM05D007560 ORTHO05D005947 7.2e-40 168.7 406 31.5
Lj8C356T1 Lonicera japonica HOM05D007560 ORTHO05D005947 7.4e-37 158.7 402 29.4
Lj5C338T12 Lonicera japonica HOM05D007560 ORTHO05D005947 2.0e-34 150.6 384 31.0
Lj5C336T6 Lonicera japonica HOM05D007560 ORTHO05D005947 2.6e-34 150.2 392 31.1
Rhsim11G0104200 Rhododendron simsii HOM05D007560 ORTHO05D005947 1.0e-33 148.3 341 32.0
Lj5C336G7 Lonicera japonica HOM05D007560 ORTHO05D005947 2.7e-31 140.2 365 28.8
Peaxi162Scf00408g00045 Petunia axillaris HOM05D007560 ORTHO05D005947 3.3e-29 133.3 355 28.5
Nitab4.5_0001737g0020 Nicotiana tabacum HOM05D007560 ORTHO05D005947 3.7e-28 129.8 385 27.5
Eucgr.H04774 Eucalyptus grandis HOM05D007560 ORTHO05D005947 4.8e-28 129.4 208 32.7
Lj5C338T11 Lonicera japonica HOM05D007560 ORTHO05D005947 6.3e-28 129.0 318 31.8
COL.COLO4_32922 Corchorus olitorius HOM05D007560 ORTHO05D005947 1.1e-27 128.3 385 26.8
Lj5C338T9 Lonicera japonica HOM05D007560 ORTHO05D005947 4.1e-27 126.3 333 30.6
Rhsim11G0103400 Rhododendron simsii HOM05D007560 ORTHO05D005947 7.7e-26 122.1 363 27.8
Eucgr.H04775 Eucalyptus grandis HOM05D007560 ORTHO05D005947 1.7e-25 120.9 340 25.9
Peaxi162Scf00058g00156 Petunia axillaris HOM05D007560 ORTHO05D005947 2.2e-25 120.6 367 25.6
Eucgr.H04773 Eucalyptus grandis HOM05D007560 ORTHO05D005947 8.5e-25 118.6 341 27.3
Lj6C625T6 Lonicera japonica HOM05D007560 ORTHO05D005947 1.1e-24 118.2 218 34.4
Peaxi162Scf00153g00103 Petunia axillaris HOM05D007560 ORTHO05D005947 1.1e-24 118.2 217 33.2
Nitab4.5_0000005g0280 Nicotiana tabacum HOM05D007560 ORTHO05D005947 2.5e-24 117.1 209 33.5
Nitab4.5_0001058g0060 Nicotiana tabacum HOM05D007560 ORTHO05D005947 2.5e-24 117.1 217 32.7
COL.COLO4_33377 Corchorus olitorius HOM05D007560 ORTHO05D005947 3.2e-24 116.7 384 23.4
Aqoxy6G01701 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 7.2e-24 115.5 218 34.4
CAN.G135.62 Capsicum annuum HOM05D007560 ORTHO05D005947 9.4e-24 115.2 221 33.5
Nitab4.5_0006682g0020 Nicotiana tabacum HOM05D007560 ORTHO05D005947 1.6e-23 114.4 217 30.9
Peaxi162Scf00191g01113 Petunia axillaris HOM05D007560 ORTHO05D005947 1.6e-23 114.4 215 32.6
Hund19676 Selenicereus undatus HOM05D007560 ORTHO05D005947 2.1e-23 114.0 397 24.4
Aqoxy5G01431 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 2.7e-23 113.6 206 34.0
Migut.K01081 Erythranthe guttata HOM05D007560 ORTHO05D005947 3.6e-23 113.2 218 31.2
Lj8C38T12 Lonicera japonica HOM05D007560 ORTHO05D005947 4.7e-23 112.8 377 27.6
Migut.K01090 Erythranthe guttata HOM05D007560 ORTHO05D005947 6.1e-23 112.5 222 35.1
Lj8P356T21 Lonicera japonica HOM05D007560 ORTHO05D005947 6.1e-23 112.5 215 33.0
Cc02_g35550 Coffea canephora HOM05D007560 ORTHO05D005947 1.0e-22 111.7 213 32.9
Rhsim11G0104100 Rhododendron simsii HOM05D007560 ORTHO05D005947 3.0e-22 110.2 165 38.2
Nitab4.5_0009688g0040 Nicotiana tabacum HOM05D007560 ORTHO05D005947 3.9e-22 109.8 293 29.0
Rhsim11G0091600 Rhododendron simsii HOM05D007560 ORTHO05D005947 3.9e-22 109.8 156 36.5
Migut.B00757 Erythranthe guttata HOM05D007560 ORTHO05D005947 8.8e-22 108.6 222 31.5
Migut.B00756 Erythranthe guttata HOM05D007560 ORTHO05D005947 2.0e-21 107.5 230 30.0
Aqoxy5G04188 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 3.3e-21 106.7 341 28.7
Migut.B00678 Erythranthe guttata HOM05D007560 ORTHO05D005947 5.7e-21 105.9 222 30.6
Peaxi162Scf00598g00085 Petunia axillaris HOM05D007560 ORTHO05D005947 7.4e-21 105.5 216 31.9
Aqoxy7G01047 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 6.3e-20 102.4 208 33.7
Migut.K01083 Erythranthe guttata HOM05D007560 ORTHO05D005947 6.3e-20 102.4 209 32.1
Aqoxy2G03976 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 8.2e-20 102.1 353 26.1
Aqoxy5G04187 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 2.4e-19 100.5 209 33.5
Aqoxy5G01432 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 9.1e-19 98.6 216 34.7
Peaxi162Scf00738g00116 Petunia axillaris HOM05D007560 ORTHO05D005947 9.1e-19 98.6 241 30.3
Lj8P356T28 Lonicera japonica HOM05D007560 ORTHO05D005947 3.5e-18 96.7 68 63.2
Actinidia01719 Actinidia chinensis HOM05D007560 ORTHO05D005947 5.0e-17 92.8 117 42.7
Aqoxy2G00132 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 6.5e-17 92.4 147 35.4
Aqoxy7G01380 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 2.5e-16 90.5 217 30.4
Aqoxy5G01975 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 4.2e-16 89.7 342 24.3
PGSC0003DMG400039452 Solanum tuberosum HOM05D007560 ORTHO05D005947 4.2e-16 89.7 153 34.0
COL.COLO4_03806 Corchorus olitorius HOM05D023542 ORTHO05D005947 7.2e-16 89.0 176 30.7
Peaxi162Scf00738g00123 Petunia axillaris HOM05D007560 ORTHO05D005947 9.4e-16 88.6 161 32.9
COL.COLO4_03807 Corchorus olitorius HOM05D023542 ORTHO05D005947 1.2e-15 88.2 272 29.0
Lj6A626T22 Lonicera japonica HOM05D007560 ORTHO05D005947 1.6e-15 87.8 215 31.2
Aqoxy7G01375 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 3.6e-15 86.7 194 28.4
CAN.G1248.7 Capsicum annuum HOM05D015457 ORTHO05D020327 4.7e-15 86.3 222 27.9
Lj5C336T3 Lonicera japonica HOM05D007560 ORTHO05D005947 8.0e-15 85.5 162 30.9
Lj6C626T9 Lonicera japonica HOM05D007560 ORTHO05D005947 1.4e-14 84.7 68 55.9
Aqoxy5G01909 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 4.0e-14 83.2 411 22.1
Lj6A404T21 Lonicera japonica HOM05D007560 ORTHO05D005947 4.0e-14 83.2 101 41.6
TAR371G0292 Trochodendron aralioides HOM05D000007 ORTHO05D007252 8.8e-14 82.0 213 26.8
Lj5E336G0 Lonicera japonica HOM05D007560 ORTHO05D005947 3.3e-13 80.1 68 58.8
PSO421G0214 Papaver somniferum HOM05D008691 ORTHO05D005947 4.4e-13 79.7 199 33.2
TAR371G0430 Trochodendron aralioides HOM05D000007 ORTHO05D007252 5.7e-13 79.3 213 26.3
Nitab4.5_0000800g0010 Nicotiana tabacum HOM05D007560 ORTHO05D005947 1.3e-12 78.2 118 38.1
CAN.G135.61 Capsicum annuum HOM05D007560 ORTHO05D005947 1.7e-12 77.8 158 32.3
SGA_v2.0_scaffold279G46801 Striga asiatica HOM05D031079 ORTHO05D005947 1.7e-12 77.8 193 30.1
Peaxi162Scf00738g00002 Petunia axillaris HOM05D007560 ORTHO05D005947 2.2e-12 77.4 202 29.2
PSO478G1223 Papaver somniferum HOM05D008691 ORTHO05D005947 4.8e-12 76.3 206 34.0
Aqoxy5G01433 Aquilegia oxysepala HOM05D007560 ORTHO05D005947 8.2e-12 75.5 151 35.1
Lj4A614G14 Lonicera japonica HOM05D007560 ORTHO05D005947 8.2e-12 75.5 83 49.4
Peaxi162Scf00738g00112 Petunia axillaris HOM05D007560 ORTHO05D005947 1.8e-11 74.3 154 27.9
TAR371G0093 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.8e-11 74.3 283 25.1
MBI19_g26732_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 3.1e-11 73.6 126 32.5
TAR371G0533 Trochodendron aralioides HOM05D000007 ORTHO05D007252 4.1e-11 73.2 315 23.2
SGA_v2.0_scaffold279G46810 Striga asiatica HOM05D031079 ORTHO05D005947 1.6e-10 71.2 161 30.4
PSO384G1299 Papaver somniferum HOM05D008691 ORTHO05D005947 4.5e-10 69.7 196 29.1
PSO339G4880 Papaver somniferum HOM05D008691 ORTHO05D005947 5.9e-10 69.3 227 30.8
Migut.C00457 Erythranthe guttata HOM05D031079 ORTHO05D005947 7.7e-10 68.9 168 28.6
COL.COLO4_10475 Corchorus olitorius HOM05D023542 ORTHO05D005947 1.3e-09 68.2 219 26.0
Lj4C614T4 Lonicera japonica HOM05D007560 ORTHO05D005947 1.7e-09 67.8 79 39.2
Actinidia01716 Actinidia chinensis HOM05D007560 ORTHO05D005947 3.8e-09 66.6 55 58.2
Aqoxy7G01046 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 5.0e-09 66.2 95 33.7
Dinv30955 Davidia involucrata HOM05D008691 ORTHO05D005947 1.1e-08 65.1 56 57.1
TAR371G1173 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.1e-08 65.1 132 29.5
Lj5P358T14 Lonicera japonica HOM05D007560 ORTHO05D005947 1.9e-08 64.3 68 48.5
PSO782G1951 Papaver somniferum HOM05D008691 ORTHO05D005947 1.9e-08 64.3 216 27.3
Sabra02G0170100 Salix brachista HOM05D000007 ORTHO05D000521 1.9e-08 64.3 242 24.4
Solyc01g102320.2 Solanum lycopersicum HOM05D015457 ORTHO05D020327 3.2e-08 63.5 186 29.0
Actinidia26832 Actinidia chinensis HOM05D000007 ORTHO05D000017 7.2e-08 62.4 260 26.5
Aqoxy5G01978 Aquilegia oxysepala HOM05D008691 ORTHO05D005947 7.2e-08 62.4 125 31.2
Nitab4.5_0021475g0010 Nicotiana tabacum HOM05D007560 ORTHO05D005947 7.2e-08 62.4 104 29.8
HanXRQChr08g0209381 Helianthus annuus HOM05D000007 ORTHO05D000521 1.2e-07 61.6 93 32.3
Thecc.01G188100 Theobroma cacao HOM05D000007 ORTHO05D000521 1.2e-07 61.6 220 23.2
TAR371G0023 Trochodendron aralioides HOM05D000007 ORTHO05D022563 1.6e-07 61.2 116 28.4
Lj5A667T12 Lonicera japonica HOM05D007560 ORTHO05D005947 2.7e-07 60.5 72 37.5
PSO210G3980 Papaver somniferum HOM05D000007 ORTHO05D000676 2.7e-07 60.5 59 50.8
TAR371G0451 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.7e-07 60.5 211 28.0
Lju967A0T15 Lonicera japonica HOM05D007560 ORTHO05D005947 3.6e-07 60.1 131 29.8
RcHm_v2.0_Chr4g0420091 Rosa chinensis HOM05D000007 ORTHO05D000521 3.6e-07 60.1 294 25.5
PSO173G0057 Papaver somniferum HOM05D000007 ORTHO05D000676 4.7e-07 59.7 222 25.7
Lj6g0019357 Lotus japonicus HOM05D000007 ORTHO05D000017 6.1e-07 59.3 124 29.8
PSO063G7584 Papaver somniferum HOM05D008691 ORTHO05D005947 6.1e-07 59.3 225 25.8
Rhsim04G0041100 Rhododendron simsii HOM05D000007 ORTHO05D000521 6.1e-07 59.3 67 46.3
Nitab4.5_0000157g0070 Nicotiana tabacum HOM05D000007 ORTHO05D007252 8.0e-07 58.9 161 25.5
Oeu030025.1 Olea europaea HOM05D000007 ORTHO05D000521 8.0e-07 58.9 60 50.0
PSO541G3996 Papaver somniferum HOM05D000007 ORTHO05D000676 8.0e-07 58.9 53 49.1
PSO170G2572 Papaver somniferum HOM05D008691 ORTHO05D005947 1.0e-06 58.5 227 25.6
HanXRQChr00c0237g0572781 Helianthus annuus HOM05D000007 ORTHO05D000521 1.4e-06 58.2 79 32.9
HanXRQChr11g0327481 Helianthus annuus HOM05D000007 ORTHO05D000676 1.4e-06 58.2 79 32.9
SGA_v2.0_scaffold31G12737 Striga asiatica HOM05D000007 ORTHO05D007252 1.8e-06 57.8 165 26.1
HanXRQChr03g0074871 Helianthus annuus HOM05D000007 ORTHO05D000521 2.3e-06 57.4 111 30.6
Lsat_1_v5_gn_9_104220 Lactuca sativa HOM05D000007 ORTHO05D000521 2.3e-06 57.4 85 36.5
PSO170G2084 Papaver somniferum HOM05D008691 ORTHO05D005947 2.3e-06 57.4 223 24.7
TAR371G1227 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.3e-06 57.4 130 27.7
HanXRQChr03g0074881 Helianthus annuus HOM05D000007 ORTHO05D000521 3.0e-06 57.0 79 31.6
Rhsim03G0071600 Rhododendron simsii HOM05D019855 ORTHO05D018548 3.0e-06 57.0 206 26.7
PSO339G6675 Papaver somniferum HOM05D000007 ORTHO05D000676 4.0e-06 56.6 271 23.2
RcHm_v2.0_Chr6g0291931 Rosa chinensis HOM05D001729 ORTHO05D001155 4.0e-06 56.6 42 59.5
Potri.002G223000 Populus trichocarpa HOM05D000007 ORTHO05D000521 5.2e-06 56.2 238 22.7
Glyma.06G126800 Glycine max HOM05D000007 ORTHO05D000017 6.8e-06 55.8 103 32.0
Lj1g0007805 Lotus japonicus HOM05D000007 ORTHO05D000039 6.8e-06 55.8 124 30.6
TWI18G1348 Tripterygium wilfordii HOM05D000007 ORTHO05D000521 6.8e-06 55.8 46 54.3
TAR371G0448 Trochodendron aralioides HOM05D000007 ORTHO05D007252 6.8e-06 55.8 71 38.0
vmacro12514 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 6.8e-06 55.8 71 43.7
MBI19_g35549_MAGBIO Magnolia biondii HOM05D000007 ORTHO05D007252 8.8e-06 55.5 125 27.2
QL08p040393 Quercus lobata HOM05D000007 ORTHO05D000039 8.8e-06 55.5 37 62.2


User provided reference genes

Program Settings