Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 1.5e-69 266.2 139 100.0
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 1.1e-40 170.2 131 67.9
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 7.0e-40 167.5 140 65.7
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 5.6e-37 157.9 136 59.6
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 1.7e-33 146.4 139 56.8
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 1.0e-30 137.1 130 59.2
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 6.6e-30 134.4 105 66.7
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 1.1e-29 133.7 112 57.1
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 3.3e-29 132.1 137 55.5
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 4.3e-29 131.7 141 51.1
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 1.1e-27 127.1 113 57.5
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 1.8e-27 126.3 140 53.6
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 2.3e-27 125.9 140 51.4
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 2.0e-26 122.9 140 50.0
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 5.8e-26 121.3 141 47.5
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 7.6e-26 120.9 101 63.4
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 2.2e-25 119.4 110 51.8
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 2.9e-25 119.0 110 54.5
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 1.4e-24 116.7 130 50.8
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 3.2e-24 115.5 113 53.1
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 5.4e-24 114.8 121 50.4
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 2.7e-23 112.5 114 52.6
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 2.7e-23 112.5 122 48.4
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 1.0e-22 110.5 146 47.9
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 3.9e-22 108.6 139 46.0
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 5.1e-22 108.2 142 46.5
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 6.6e-22 107.8 116 50.9
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.5e-21 106.7 139 45.3
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 1.9e-21 106.3 129 51.2
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 2.5e-21 105.9 114 51.8
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 4.3e-21 105.1 114 49.1
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 7.3e-21 104.4 110 51.8
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 7.3e-21 104.4 108 50.0
Sabra15G0109100 Salix brachista HOM05D000631 ORTHO05D000524 7.3e-21 104.4 112 48.2
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 9.6e-21 104.0 109 51.4
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 9.6e-21 104.0 109 51.4
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.2e-20 103.6 112 54.5
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.6e-20 103.2 121 49.6
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 2.1e-20 102.8 142 43.7
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 4.7e-20 101.7 156 46.2
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 8.1e-20 100.9 104 51.9
Thecc.03G117800 Theobroma cacao HOM05D007296 ORTHO05D009201 1.1e-19 100.5 118 44.9
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 1.4e-19 100.1 115 48.7
Sopen02g038130 Solanum pennellii HOM05D007296 ORTHO05D009201 1.4e-19 100.1 134 43.3
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 2.4e-19 99.4 110 51.8
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 3.1e-19 99.0 103 50.5
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 6.8e-19 97.8 115 46.1
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 8.9e-19 97.4 106 55.7
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 8.9e-19 97.4 114 45.6
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 1.2e-18 97.1 107 53.3
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 1.5e-18 96.7 108 50.9
Actinidia33329 Actinidia chinensis HOM05D007296 ORTHO05D009201 2.0e-18 96.3 97 56.7
Rhsim08G0048000 Rhododendron simsii HOM05D007296 ORTHO05D009201 2.6e-18 95.9 116 51.7
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 3.4e-18 95.5 110 50.0
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 3.4e-18 95.5 120 46.7
Solyc02g093525.1 Solanum lycopersicum HOM05D007296 ORTHO05D009201 3.4e-18 95.5 116 45.7
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 4.4e-18 95.1 114 46.5
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 4.4e-18 95.1 117 50.4
Manes.14G057736 Manihot esculenta HOM05D007296 ORTHO05D009201 1.3e-17 93.6 106 47.2
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 1.7e-17 93.2 114 46.5
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 2.9e-17 92.4 143 39.9
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 1.4e-16 90.1 109 42.2
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 4.2e-16 88.6 118 42.4
Ciclev10022926m.g Citrus clementina HOM05D007296 ORTHO05D009201 4.2e-16 88.6 116 44.8
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 5.4e-16 88.2 119 42.9
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 1.2e-15 87.0 110 47.3
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 2.1e-15 86.3 141 41.1
QL10p006090 Quercus lobata HOM05D007296 ORTHO05D009201 2.1e-15 86.3 131 41.2
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 3.5e-15 85.5 110 45.5
Gohir.D07G059700 Gossypium hirsutum HOM05D007296 ORTHO05D009201 6.0e-15 84.7 107 44.9
Gorai.001G063200 Gossypium raimondii HOM05D007296 ORTHO05D009201 6.0e-15 84.7 107 44.9
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 1.7e-14 83.2 96 45.8
Gohir.A07G055400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 2.3e-14 82.8 107 43.9
Gorai.006G035000 Gossypium raimondii HOM05D007296 ORTHO05D009201 2.3e-14 82.8 139 39.6
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 6.6e-14 81.3 103 43.7
Glyma.05G042900 Glycine max HOM05D007296 ORTHO05D009201 6.6e-14 81.3 109 40.4
Lalb_Chr07g0183081 Lupinus albus HOM05D007296 ORTHO05D009201 1.9e-13 79.7 139 36.7
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 2.5e-13 79.3 122 40.2
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 2.5e-13 79.3 109 45.0
Migut.K01416 Erythranthe guttata HOM05D007296 ORTHO05D009201 2.5e-13 79.3 107 47.7
Phvul.003G206500 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 3.3e-13 79.0 117 37.6
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 4.3e-13 78.6 95 50.5
COL.COLO4_30221 Corchorus olitorius HOM05D007296 ORTHO05D009201 5.6e-13 78.2 116 37.9
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 5.6e-13 78.2 114 44.7
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 7.3e-13 77.8 101 46.5
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 9.6e-13 77.4 128 43.0
SalBow7G1031 Salvia bowleyana HOM05D007296 ORTHO05D009201 9.6e-13 77.4 91 45.1
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 1.6e-12 76.6 101 45.5
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 1.6e-12 76.6 101 46.5
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 2.8e-12 75.9 84 51.2
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 2.8e-12 75.9 143 37.8
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 6.2e-12 74.7 87 48.3
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 8.1e-12 74.3 87 50.6
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 1.1e-11 73.9 88 50.0
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 1.4e-11 73.6 101 42.6
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 1.4e-11 73.6 101 42.6
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 1.4e-11 73.6 117 41.9
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 1.8e-11 73.2 133 37.6
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 2.4e-11 72.8 88 48.9
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 4.0e-11 72.0 109 41.3
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 1.5e-10 70.1 71 53.5
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 1.5e-10 70.1 133 37.6
Phvul.004G061700 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 2.0e-10 69.7 106 37.7
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 2.6e-10 69.3 123 39.8
Atru.chr9.2613 Acer truncatum HOM05D007296 ORTHO05D009201 3.4e-10 68.9 66 51.5
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 4.4e-10 68.6 108 41.7
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 5.8e-10 68.2 62 54.8
VMungo1215G1852 Vigna mungo HOM05D007296 ORTHO05D009201 7.6e-10 67.8 106 36.8
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 9.9e-10 67.4 133 36.8
QL10p006100 Quercus lobata HOM05D007296 ORTHO05D009201 2.2e-09 66.2 92 40.2
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 2.2e-09 66.2 120 40.8
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 2.4e-08 62.8 74 45.9
Os01g0938400 Oryza sativa ssp. japonica HOM05D024678 ORTHO05D025976 3.0e-06 55.8 59 52.5


User provided reference genes

Program Settings