Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.0e-25 119.4 64 100.0
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 5.4e-19 97.1 64 81.2
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 4.6e-18 94.0 64 76.6
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.0e-17 92.8 64 79.7
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 2.3e-17 91.7 63 76.2
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 3.0e-17 91.3 64 81.2
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 6.6e-17 90.1 63 74.6
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 6.6e-17 90.1 63 74.6
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 8.6e-17 89.7 63 77.8
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.1e-16 89.4 64 70.3
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 1.1e-16 89.4 64 71.9
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 1.1e-16 89.4 64 78.1
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 1.5e-16 89.0 64 70.3
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 2.5e-16 88.2 64 70.3
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 3.3e-16 87.8 64 76.6
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 3.3e-16 87.8 64 68.8
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 4.3e-16 87.4 64 76.6
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 4.3e-16 87.4 64 68.8
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.6e-16 87.0 64 70.3
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.6e-16 87.0 64 70.3
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 5.6e-16 87.0 64 75.0
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 5.6e-16 87.0 64 75.0
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 5.6e-16 87.0 64 70.3
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 7.3e-16 86.7 64 68.8
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 7.3e-16 86.7 64 68.8
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 7.3e-16 86.7 64 68.8
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 7.3e-16 86.7 64 67.2
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 2.1e-15 85.1 64 75.0
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 2.8e-15 84.7 64 68.8
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 2.8e-15 84.7 64 68.8
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 3.6e-15 84.3 64 68.8
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 3.6e-15 84.3 62 67.7
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 4.7e-15 84.0 64 68.8
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 4.7e-15 84.0 63 73.0
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 4.7e-15 84.0 64 70.3
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 4.7e-15 84.0 64 68.8
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 6.2e-15 83.6 64 68.8
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 8.0e-15 83.2 64 67.2
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 8.0e-15 83.2 64 67.2
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 1.0e-14 82.8 64 71.9
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 1.0e-14 82.8 64 68.8
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 1.0e-14 82.8 63 69.8
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 1.4e-14 82.4 64 68.8
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 1.4e-14 82.4 63 69.8
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 1.4e-14 82.4 63 69.8
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 1.8e-14 82.0 63 68.3
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 1.8e-14 82.0 64 70.3
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 1.8e-14 82.0 63 73.0
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 2.3e-14 81.6 63 69.8
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 2.3e-14 81.6 63 69.8
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 2.3e-14 81.6 64 68.8
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.3e-14 81.6 82 62.2
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 2.3e-14 81.6 64 67.2
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 2.3e-14 81.6 63 71.4
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 2.3e-14 81.6 63 71.4
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 4.0e-14 80.9 64 70.3
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 4.0e-14 80.9 64 67.2
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 5.2e-14 80.5 64 67.2
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 5.2e-14 80.5 63 71.4
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 5.2e-14 80.5 70 64.3
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 5.2e-14 80.5 63 68.3
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 6.8e-14 80.1 64 68.8
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 6.8e-14 80.1 63 65.1
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 8.9e-14 79.7 63 66.7
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 8.9e-14 79.7 63 66.7
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 8.9e-14 79.7 63 68.3
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 1.2e-13 79.3 64 67.2
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 1.2e-13 79.3 63 66.7
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.2e-13 79.3 88 55.7
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 1.2e-13 79.3 64 70.3
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 1.2e-13 79.3 63 68.3
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 1.5e-13 79.0 64 67.2
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 2.6e-13 78.2 63 68.3
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 2.6e-13 78.2 63 71.4
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 3.4e-13 77.8 64 64.1
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 3.4e-13 77.8 63 65.1
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 5.8e-13 77.0 63 66.7
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 5.8e-13 77.0 63 66.7
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 7.5e-13 76.6 63 65.1
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 7.5e-13 76.6 63 66.7
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 7.5e-13 76.6 64 67.2
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 9.8e-13 76.3 63 65.1
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 9.8e-13 76.3 63 65.1
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 9.8e-13 76.3 63 65.1
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 9.8e-13 76.3 63 65.1
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 9.8e-13 76.3 63 66.7
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 1.3e-12 75.9 63 65.1
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 1.3e-12 75.9 63 63.5
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 2.2e-12 75.1 64 67.2
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 2.9e-12 74.7 63 63.5
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.7e-12 74.3 60 68.3
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 4.9e-12 73.9 64 65.6
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 4.9e-12 73.9 64 65.6
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 4.9e-12 73.9 64 65.6
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 6.4e-12 73.6 63 65.1
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 8.3e-12 73.2 64 65.6
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 1.1e-11 72.8 64 64.1
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 1.1e-11 72.8 63 69.8
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 4.1e-11 70.9 64 60.9
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 9.2e-11 69.7 48 70.8
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 3.0e-09 64.7 50 68.0
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 3.9e-09 64.3 65 60.0
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.1e-08 62.8 54 63.0
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 1.9e-08 62.0 63 52.4
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 1.6e-07 58.9 43 67.4
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 2.8e-07 58.2 52 59.6
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 4.7e-07 57.4 48 62.5
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.4e-06 55.8 64 48.4
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 1.4e-06 55.8 64 48.4


User provided reference genes

Program Settings