Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008649 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 2.3e-49 198.7 113 100.0
CSS0035070 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 1.0e-28 130.2 81 98.8
Prupe.1G489600 Prunus persica HOM05D003077 ORTHO05D003354 1.5e-16 89.7 82 67.1
vmacro00865 Vaccinium macrocarpon HOM05D003077 ORTHO05D003354 2.0e-16 89.4 82 67.1
Dinv14687 Davidia involucrata HOM05D003077 ORTHO05D003354 4.4e-16 88.2 75 66.7
Actinidia21280 Actinidia chinensis HOM05D003077 ORTHO05D003354 1.7e-15 86.3 83 62.7
Actinidia15214 Actinidia chinensis HOM05D003077 ORTHO05D003354 3.7e-15 85.1 81 63.0
CiPaw.16G022800 Carya illinoinensis HOM05D003077 ORTHO05D003354 6.4e-15 84.3 84 60.7
Hma1.2p1_0014F.1_g010220 Hydrangea macrophylla HOM05D003077 ORTHO05D003354 9.2e-14 80.5 98 53.1
Cfa018128 Carpinus fangiana HOM05D003077 ORTHO05D003354 2.0e-13 79.3 84 58.3
Rhsim11G0071700 Rhododendron simsii HOM05D003077 ORTHO05D003354 4.6e-13 78.2 74 63.5
Glyma.14G154900 Glycine max HOM05D003077 ORTHO05D003354 1.0e-12 77.0 85 55.3
GSVIVG01008808001 Vitis vinifera HOM05D003077 ORTHO05D003354 1.3e-12 76.6 72 58.3
MD08G1159200 Malus domestica HOM05D003077 ORTHO05D003354 1.7e-12 76.3 83 57.8
Glyma.13G032500 Glycine max HOM05D003077 ORTHO05D003354 2.3e-12 75.9 69 62.3
Phvul.001G070500 Phaseolus vulgaris HOM05D003077 ORTHO05D003354 2.3e-12 75.9 99 50.5
CANSAT25G3561 Cannabis sativa HOM05D003077 ORTHO05D003354 3.9e-12 75.1 94 50.0
Sc15g0007510 Simmondsia chinensis HOM05D003077 ORTHO05D003354 5.0e-12 74.7 83 56.6
CiPaw.15G031400 Carya illinoinensis HOM05D003077 ORTHO05D003354 6.6e-12 74.3 68 61.8
FvH4_2g27830 Fragaria vesca HOM05D003077 ORTHO05D003354 3.3e-11 72.0 75 56.0
FAN15G0848 Fragaria x ananassa HOM05D003077 ORTHO05D003354 3.3e-11 72.0 75 56.0
FAN24G2697 Fragaria x ananassa HOM05D003077 ORTHO05D003354 3.3e-11 72.0 75 56.0
FAN27G2585 Fragaria x ananassa HOM05D003077 ORTHO05D003354 3.3e-11 72.0 75 56.0
Manes.02G168300 Manihot esculenta HOM05D003077 ORTHO05D003354 4.3e-11 71.6 76 57.9
Sabra05G0138200 Salix brachista HOM05D003077 ORTHO05D003354 5.6e-11 71.2 85 54.1
Potri.005G182300 Populus trichocarpa HOM05D003077 ORTHO05D003354 9.5e-11 70.5 95 51.6
THA.LOC104813681 Tarenaya hassleriana HOM05D003077 ORTHO05D003354 9.5e-11 70.5 101 47.5
Lalb_Chr10g0101491 Lupinus albus HOM05D003077 ORTHO05D003354 1.2e-10 70.1 99 45.5
Sabra02G0061700 Salix brachista HOM05D003077 ORTHO05D003354 1.2e-10 70.1 71 59.2
FAN20G3132 Fragaria x ananassa HOM05D003077 ORTHO05D003354 1.6e-10 69.7 75 54.7
VMungo0647G0503 Vigna mungo HOM05D003077 ORTHO05D003354 1.6e-10 69.7 99 47.5
ClCG08G006020 Citrullus lanatus HOM05D003077 ORTHO05D003354 2.1e-10 69.3 75 54.7
CsaV3_6G034070 Cucumis sativus L. HOM05D003077 ORTHO05D003354 2.8e-10 68.9 75 54.7
Solyc11g005130.2 Solanum lycopersicum HOM05D003077 ORTHO05D003354 3.6e-10 68.6 79 57.0
Sopen11g001130 Solanum pennellii HOM05D003077 ORTHO05D003354 3.6e-10 68.6 79 57.0
Cpa.g.sc64.169 Carica papaya HOM05D003077 ORTHO05D003354 4.7e-10 68.2 97 45.4
Potri.002G078800 Populus trichocarpa HOM05D003077 ORTHO05D003354 6.2e-10 67.8 87 51.7
Sc02g0004730 Simmondsia chinensis HOM05D003077 ORTHO05D003354 6.2e-10 67.8 80 51.2
TAR625G0294 Trochodendron aralioides HOM05D003077 ORTHO05D003354 6.2e-10 67.8 92 51.1
MELO3C010653.2 Cucumis melo HOM05D003077 ORTHO05D003354 8.1e-10 67.4 75 53.3
Manes.18G082300 Manihot esculenta HOM05D003077 ORTHO05D003354 1.4e-09 66.6 84 53.6
Carub.0001s2104 Capsella rubella HOM05D003077 ORTHO05D003354 3.1e-09 65.5 73 49.3
Medtr1g029680 Medicago truncatula HOM05D003077 ORTHO05D003354 3.1e-09 65.5 74 52.7
Nitab4.5_0001168g0100 Nicotiana tabacum HOM05D003077 ORTHO05D003354 4.0e-09 65.1 88 48.9
TPR.G39636 Trifolium pratense HOM05D003077 ORTHO05D003354 4.0e-09 65.1 78 51.3
Nn5g28434 Nelumbo nucifera HOM05D003077 ORTHO05D003354 5.2e-09 64.7 94 48.9
RcHm_v2.0_Chr6g0296701 Rosa chinensis HOM05D003077 ORTHO05D003354 5.2e-09 64.7 52 65.4
TWI34G0175 Tripterygium wilfordii HOM05D003077 ORTHO05D003354 5.2e-09 64.7 96 39.6
CAN.G716.6 Capsicum annuum HOM05D003077 ORTHO05D003354 6.8e-09 64.3 89 47.2
AL1G34750 Arabidopsis lyrata HOM05D003077 ORTHO05D003354 8.9e-09 63.9 73 49.3
Ca_12646_v3 Cicer arietinum L. HOM05D003077 ORTHO05D003354 8.9e-09 63.9 76 52.6
EL10Ac1g01345 Beta vulgaris HOM05D003077 ORTHO05D003354 1.2e-08 63.5 82 54.9
Nitab4.5_0003863g0040 Nicotiana tabacum HOM05D003077 ORTHO05D003354 1.2e-08 63.5 88 47.7
Psat6g040480 Pisum sativum HOM05D003077 ORTHO05D003354 1.2e-08 63.5 80 51.2
PGR042G0595 Punica granatum HOM05D003077 ORTHO05D003354 1.2e-08 63.5 81 56.8
VMungo1309G2236 Vigna mungo HOM05D003077 ORTHO05D003354 1.2e-08 63.5 50 72.0
Aa31LG4G7340 Aethionema arabicum HOM05D003077 ORTHO05D003354 1.5e-08 63.2 72 51.4
Lj1g0018738 Lotus japonicus HOM05D003077 ORTHO05D003354 1.5e-08 63.2 49 67.3
Atru.chr13.1565 Acer truncatum HOM05D003077 ORTHO05D003354 2.0e-08 62.8 99 45.5
Aa31LG7G5590 Aethionema arabicum HOM05D003077 ORTHO05D003354 2.0e-08 62.8 85 48.2
Ca_16606_v3 Cicer arietinum L. HOM05D003077 ORTHO05D005230 2.0e-08 62.8 49 67.3
Lalb_Chr23g0271171 Lupinus albus HOM05D003077 ORTHO05D003354 2.0e-08 62.8 82 53.7
Sp5g32490 Schrenkiella parvula HOM05D003077 ORTHO05D003354 2.0e-08 62.8 73 52.1
Thhalv10018217m.g Eutrema salsugineum HOM05D003077 ORTHO05D003354 2.6e-08 62.4 73 53.4
Lsat_1_v5_gn_1_7800 Lactuca sativa HOM05D003077 ORTHO05D003354 2.6e-08 62.4 50 70.0
Medtr3g088585 Medicago truncatula HOM05D003077 ORTHO05D003354 2.6e-08 62.4 49 65.3
Nn1g08962 Nelumbo nucifera HOM05D003077 ORTHO05D003354 2.6e-08 62.4 57 61.4
Sed0016256 Sechium edule HOM05D003077 ORTHO05D003354 2.6e-08 62.4 43 72.1
Gohir.A02G110500 Gossypium hirsutum HOM05D003077 ORTHO05D003354 4.4e-08 61.6 80 47.5
MBI03_g39653_MAGBIO Magnolia biondii HOM05D003077 ORTHO05D003354 4.4e-08 61.6 72 48.6
Gohir.D03G069004 Gossypium hirsutum HOM05D003077 ORTHO05D003354 7.5e-08 60.8 87 44.8
TAR628G1099 Trochodendron aralioides HOM05D003077 ORTHO05D003354 7.5e-08 60.8 98 44.9
Lsat_1_v5_gn_6_110261 Lactuca sativa HOM05D003077 ORTHO05D003354 9.9e-08 60.5 66 54.5
Psat5g084800 Pisum sativum HOM05D003077 ORTHO05D003354 9.9e-08 60.5 46 65.2
Gorai.013G107800 Gossypium raimondii HOM05D003077 ORTHO05D003354 1.3e-07 60.1 87 44.8
Phvul.009G129800 Phaseolus vulgaris HOM05D003077 ORTHO05D003354 1.3e-07 60.1 41 75.6
ATR0584G207 Amborella trichopoda HOM05D003077 ORTHO05D003354 1.7e-07 59.7 72 51.4
AT1G21610 Arabidopsis thaliana HOM05D003077 ORTHO05D003354 1.7e-07 59.7 73 46.6
SHI09202 Sapria himalayana HOM05D003077 ORTHO05D003354 1.7e-07 59.7 76 46.1
Glyma.04G245700 Glycine max HOM05D003077 ORTHO05D003354 2.2e-07 59.3 48 66.7
Glyma.06G117400 Glycine max HOM05D003077 ORTHO05D003354 2.2e-07 59.3 44 68.2
Sp1g19140 Schrenkiella parvula HOM05D003077 ORTHO05D003354 2.2e-07 59.3 73 46.6
MBI06_g35211_MAGBIO Magnolia biondii HOM05D003077 ORTHO05D003354 3.7e-07 58.5 59 54.2
THA.LOC104812084 Tarenaya hassleriana HOM05D003077 ORTHO05D003354 3.7e-07 58.5 64 53.1
TPR.G28812 Trifolium pratense HOM05D003077 ORTHO05D003354 3.7e-07 58.5 46 65.2
Aqoxy5G02381 Aquilegia oxysepala HOM05D003077 ORTHO05D003354 4.9e-07 58.2 58 53.4
Gohir.D02G078300 Gossypium hirsutum HOM05D003077 ORTHO05D003354 4.9e-07 58.2 98 36.7
Gorai.005G087800 Gossypium raimondii HOM05D003077 ORTHO05D003354 4.9e-07 58.2 98 36.7
CARHR021970 Cardamine hirsuta HOM05D003077 ORTHO05D003354 1.1e-06 57.0 83 42.2
DCAR_014371 Daucus carota HOM05D003077 ORTHO05D003354 1.1e-06 57.0 76 44.7
Duzib093G0755 Durio zibethinus HOM05D003077 ORTHO05D003354 1.1e-06 57.0 65 47.7
Ciclev10000343m.g Citrus clementina HOM05D003077 ORTHO05D003354 1.4e-06 56.6 54 55.6
DCAR_016656 Daucus carota HOM05D003077 ORTHO05D003354 1.4e-06 56.6 37 70.3
MSTRG.1414 Avicennia marina HOM05D003077 ORTHO05D003354 1.9e-06 56.2 108 40.7
COL.COLO4_08846 Corchorus olitorius HOM05D003077 ORTHO05D003354 1.9e-06 56.2 76 42.1
Ah.05g169130 Amaranthus hybridus HOM05D003077 ORTHO05D003354 2.4e-06 55.8 73 45.2
arahy.Tifrunner.gnm1.ann1.PT3H3P Arachis hypogaea HOM05D003077 ORTHO05D003354 2.4e-06 55.8 48 60.4
arahy.Tifrunner.gnm1.ann1.RUFP3A Arachis hypogaea HOM05D003077 ORTHO05D003354 2.4e-06 55.8 48 60.4
Migut.C01065 Erythranthe guttata HOM05D003077 ORTHO05D003354 2.4e-06 55.8 108 35.2
Gohir.A02G071200 Gossypium hirsutum HOM05D003077 ORTHO05D003354 2.4e-06 55.8 98 37.8
TWI32G1117 Tripterygium wilfordii HOM05D003077 ORTHO05D003354 2.4e-06 55.8 95 36.8
VMungo1215G2387 Vigna mungo HOM05D003077 ORTHO05D003354 2.4e-06 55.8 38 76.3
BcaC08g47619 Brassica carinata HOM05D003077 ORTHO05D003354 3.2e-06 55.5 76 46.1
C06p51470 Brassica napus HOM05D003077 ORTHO05D003354 3.2e-06 55.5 76 46.1
BolC6t40165H Brassica oleracea HOM05D003077 ORTHO05D003354 3.2e-06 55.5 76 46.1
BraA07t31806Z Brassica rapa HOM05D003077 ORTHO05D003354 3.2e-06 55.5 76 46.1
CANSAT11G0740 Cannabis sativa HOM05D003077 ORTHO05D003354 3.2e-06 55.5 36 72.2
Lj1g0006258 Lotus japonicus HOM05D003077 ORTHO05D003354 3.2e-06 55.5 71 49.3
Peaxi162Scf00066g00134 Petunia axillaris HOM05D003077 ORTHO05D003354 3.2e-06 55.5 114 44.7
Thecc.08G132900 Theobroma cacao HOM05D003077 ORTHO05D003354 5.4e-06 54.7 67 58.2
BcaB05g25039 Brassica carinata HOM05D003077 ORTHO05D003354 7.1e-06 54.3 80 42.5
A07p28050 Brassica napus HOM05D003077 ORTHO05D003354 7.1e-06 54.3 82 50.0
BraA07t30449Z Brassica rapa HOM05D003077 ORTHO05D003354 7.1e-06 54.3 82 50.0
A07p42850 Brassica napus HOM05D003077 ORTHO05D003354 9.2e-06 53.9 76 44.7


User provided reference genes

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