Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 1.4e-129 466.5 256 100.0
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 2.1e-98 362.8 256 77.3
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 5.2e-89 331.6 255 70.6
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 1.5e-88 330.1 269 69.5
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 1.5e-88 330.1 255 70.6
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 2.6e-88 329.3 258 71.3
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 7.5e-88 327.8 220 78.6
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 1.7e-87 326.6 250 70.4
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.3e-87 324.7 257 70.4
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 1.1e-86 323.9 261 68.6
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.1e-86 323.9 255 70.6
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 3.1e-86 322.4 253 70.4
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 3.1e-86 322.4 253 71.9
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 3.1e-86 322.4 254 74.4
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 4.1e-86 322.0 247 75.7
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.1e-86 322.0 255 70.2
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 1.2e-85 320.5 262 67.9
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 1.6e-85 320.1 255 70.2
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 2.0e-85 319.7 251 68.9
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 4.5e-85 318.5 254 69.7
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 4.5e-85 318.5 255 69.0
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 5.9e-85 318.2 257 69.3
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 7.8e-85 317.8 252 69.4
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 2.3e-84 316.2 259 68.7
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 2.9e-84 315.8 250 70.0
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 2.9e-84 315.8 257 68.1
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 3.8e-84 315.5 247 70.9
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 3.8e-84 315.5 251 68.5
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 8.6e-84 314.3 264 68.2
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 1.5e-83 313.5 193 85.0
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 1.9e-83 313.2 248 67.3
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 4.3e-83 312.0 253 69.6
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 4.3e-83 312.0 255 67.8
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 4.3e-83 312.0 255 67.8
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 7.3e-83 311.2 195 81.0
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 9.5e-83 310.8 265 67.5
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 9.5e-83 310.8 265 67.5
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 3.6e-82 308.9 262 66.4
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 8.0e-82 307.8 248 68.5
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 8.0e-82 307.8 255 67.5
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 8.0e-82 307.8 260 68.5
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 1.4e-81 307.0 264 67.4
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 1.4e-81 307.0 254 65.4
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 1.4e-81 307.0 254 65.4
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 1.4e-81 307.0 231 70.1
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 1.8e-81 306.6 260 65.0
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 1.8e-81 306.6 260 65.0
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 1.8e-81 306.6 260 65.0
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 2.3e-81 306.2 254 67.7
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 3.0e-81 305.8 257 65.8
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 5.2e-81 305.1 256 65.6
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 6.8e-81 304.7 262 66.0
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 8.9e-81 304.3 258 69.0
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 1.2e-80 303.9 193 79.8
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 2.0e-80 303.1 255 67.5
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 2.6e-80 302.8 245 66.5
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 2.6e-80 302.8 256 67.6
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 4.4e-80 302.0 213 76.5
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 7.5e-80 301.2 253 67.2
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 1.3e-79 300.4 259 64.9
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 1.3e-79 300.4 214 74.8
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.2e-79 299.7 201 71.1
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 2.2e-79 299.7 219 72.1
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 2.2e-79 299.7 249 67.1
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 6.4e-79 298.1 197 78.2
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 2.4e-78 296.2 200 76.5
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 4.1e-78 295.4 254 65.4
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 7.0e-78 294.7 260 63.1
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 7.0e-78 294.7 190 77.9
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 1.2e-77 293.9 261 64.4
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 7.8e-77 291.2 199 69.8
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 7.8e-77 291.2 250 65.6
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 7.8e-77 291.2 250 65.6
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.0e-76 290.8 223 70.0
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.9e-76 288.9 201 74.1
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.1e-75 287.3 208 73.1
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 7.3e-75 284.6 259 65.3
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 9.5e-75 284.3 179 82.1
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 1.1e-73 280.8 227 69.2
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 3.1e-73 279.3 198 70.7
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 4.0e-73 278.9 266 60.2
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 8.9e-73 277.7 270 61.1
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.5e-72 276.9 263 60.8
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 3.4e-72 275.8 263 60.8
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 5.8e-72 275.0 256 59.8
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.2e-71 273.1 236 65.3
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 2.9e-71 272.7 230 66.5
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 3.7e-71 272.3 271 59.8
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.1e-70 270.8 236 64.8
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 7.0e-70 268.1 236 61.9
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 4.6e-69 265.4 211 68.2
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 4.6e-69 265.4 231 64.1
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 3.9e-68 262.3 175 77.7
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 5.1e-68 261.9 187 72.7
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 3.3e-67 259.2 200 69.5
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 9.5e-67 257.7 221 65.2
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 2.1e-66 256.5 213 62.9
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 3.6e-66 255.8 219 58.9
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 8.1e-66 254.6 184 68.5
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 8.1e-66 254.6 229 62.9
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 8.9e-65 251.1 274 55.5
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 2.0e-64 250.0 163 82.8
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 2.4e-62 243.0 177 67.2
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 3.5e-61 239.2 217 59.9
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 7.8e-61 238.0 218 59.2
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.8e-57 226.9 152 77.6
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 1.8e-57 226.9 216 60.2
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 7.6e-56 221.5 189 60.3
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 9.2e-54 214.5 174 62.1
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 6.0e-53 211.8 214 60.3
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 5.6e-51 205.3 182 61.0
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 3.2e-30 136.3 96 75.0
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 8.2e-26 121.7 97 66.0
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 2.0e-24 117.1 136 50.0
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 3.0e-20 103.2 116 50.9
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-18 96.7 121 48.8
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.4e-17 94.4 71 63.4
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-15 85.1 94 41.5
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 1.3e-10 71.2 64 60.9
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 2.2e-10 70.5 103 46.6
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 6.9e-09 65.5 54 68.5
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 4.5e-08 62.8 73 50.7


User provided reference genes

Program Settings