Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.7e-41 172.2 84 100.0
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.4e-37 157.5 97 85.6
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.4e-21 104.8 72 76.4
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.4e-21 104.8 72 76.4
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 2.7e-18 95.1 83 63.9
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 2.3e-17 92.0 73 67.1
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 2.3e-17 92.0 73 67.1
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 2.3e-17 92.0 73 67.1
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 3.0e-17 91.7 73 67.1
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 3.9e-17 91.3 83 62.7
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 3.9e-17 91.3 73 65.8
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 3.9e-17 91.3 73 67.1
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 5.1e-17 90.9 72 68.1
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 6.6e-17 90.5 73 67.1
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 6.6e-17 90.5 73 67.1
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 6.6e-17 90.5 73 65.8
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 6.6e-17 90.5 73 65.8
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 8.6e-17 90.1 73 65.8
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 1.5e-16 89.4 73 65.8
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 1.5e-16 89.4 92 54.3
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 1.5e-16 89.4 73 67.1
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 1.9e-16 89.0 72 65.3
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 1.9e-16 89.0 83 57.8
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 1.9e-16 89.0 73 64.4
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 2.5e-16 88.6 73 64.4
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 2.5e-16 88.6 73 64.4
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 3.3e-16 88.2 72 65.3
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 4.3e-16 87.8 73 61.6
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 4.3e-16 87.8 72 63.9
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 4.3e-16 87.8 72 68.1
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 4.3e-16 87.8 83 59.0
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 4.3e-16 87.8 73 65.8
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 5.6e-16 87.4 73 63.0
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 5.6e-16 87.4 73 63.0
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 7.3e-16 87.0 72 63.9
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 7.3e-16 87.0 72 65.3
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 7.3e-16 87.0 73 64.4
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 9.5e-16 86.7 83 56.6
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 9.5e-16 86.7 73 63.0
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 1.2e-15 86.3 73 61.6
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 1.2e-15 86.3 73 61.6
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 1.6e-15 85.9 73 65.8
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 2.1e-15 85.5 72 65.3
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 2.1e-15 85.5 73 60.3
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 2.1e-15 85.5 72 65.3
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 2.1e-15 85.5 73 61.6
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 3.6e-15 84.7 72 63.9
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 3.6e-15 84.7 73 61.6
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 3.6e-15 84.7 74 62.2
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 3.6e-15 84.7 73 61.6
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 4.7e-15 84.3 74 62.2
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 4.7e-15 84.3 72 61.1
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 4.7e-15 84.3 73 60.3
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 8.1e-15 83.6 75 62.7
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 8.1e-15 83.6 75 62.7
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 8.1e-15 83.6 72 61.1
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 1.1e-14 83.2 73 58.9
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 1.1e-14 83.2 75 61.3
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.1e-14 83.2 73 58.9
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.1e-14 83.2 73 58.9
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 1.4e-14 82.8 73 61.6
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 1.8e-14 82.4 73 64.4
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 1.8e-14 82.4 73 60.3
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 1.8e-14 82.4 101 49.5
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.8e-14 82.4 73 63.0
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 1.8e-14 82.4 72 61.1
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 2.4e-14 82.0 72 59.7
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 2.4e-14 82.0 72 61.1
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 2.4e-14 82.0 72 61.1
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 4.0e-14 81.3 72 58.3
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 4.0e-14 81.3 72 59.7
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 4.0e-14 81.3 72 59.7
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 4.0e-14 81.3 74 60.8
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 4.0e-14 81.3 72 59.7
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 5.2e-14 80.9 73 57.5
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 5.2e-14 80.9 73 61.6
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 5.2e-14 80.9 73 56.2
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 5.2e-14 80.9 73 60.3
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 6.8e-14 80.5 72 58.3
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 6.8e-14 80.5 72 59.7
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 6.8e-14 80.5 73 63.0
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 8.9e-14 80.1 73 58.9
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 1.2e-13 79.7 74 58.1
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 2.0e-13 79.0 72 58.3
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 2.0e-13 79.0 72 59.7
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 2.0e-13 79.0 87 52.9
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.6e-13 78.6 74 58.1
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.6e-13 78.6 74 58.1
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.6e-13 78.6 74 58.1
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 3.4e-13 78.2 72 56.9
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 3.4e-13 78.2 72 56.9
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 7.6e-13 77.0 76 59.2
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 7.6e-13 77.0 72 56.9
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 7.6e-13 77.0 72 56.9
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 7.6e-13 77.0 74 56.8
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 7.6e-13 77.0 74 56.8
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 3.8e-12 74.7 73 54.8
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 3.8e-12 74.7 73 58.9
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 1.4e-11 72.8 73 57.5
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.9e-11 72.4 73 54.8
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 3.2e-11 71.6 73 54.8
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 5.4e-11 70.9 72 52.8
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 1.6e-10 69.3 72 52.8
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 3.5e-10 68.2 72 54.2
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 4.6e-10 67.8 72 51.4
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 1.0e-09 66.6 71 50.7
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 5.1e-09 64.3 73 43.8
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 1.1e-08 63.2 71 49.3
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 9.6e-08 60.1 32 71.9
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 9.6e-08 60.1 32 71.9
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 2.8e-07 58.5 57 49.1
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.8e-07 58.5 32 71.9
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.8e-07 58.5 32 71.9
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 3.6e-07 58.2 45 57.8


User provided reference genes

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